Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04070 and MMP_RS04075 are separated by 1 nucleotides MMP_RS04075 and MMP_RS04080 are separated by 405 nucleotides MMP_RS04080 and MMP_RS04085 are separated by 287 nucleotides
MMP_RS04070: MMP_RS04070 - PEGA domain-containing protein, at 770,742 to 772,682
_RS04070
MMP_RS04075: MMP_RS04075 - hypothetical protein, at 772,684 to 773,019
_RS04075
MMP_RS04080: MMP_RS04080 - tRNA-Ser, at 773,425 to 773,511
_RS04080
MMP_RS04085: MMP_RS04085 - hypothetical protein, at 773,799 to 775,298
_RS04085
Position (kb) 773
774 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 772.462 kb on - strand, within MMP_RS04070 at 772.472 kb on - strand, within MMP_RS04070 at 772.539 kb on + strand at 773.208 kb on - strand at 773.251 kb on + strand at 773.386 kb on + strand at 773.630 kb on + strand at 773.633 kb on - strand at 773.633 kb on - strand at 773.635 kb on - strand at 773.636 kb on + strand at 773.636 kb on + strand at 773.716 kb on - strand at 773.717 kb on + strand at 773.717 kb on + strand at 773.744 kb on + strand at 773.759 kb on - strand at 773.759 kb on - strand at 773.762 kb on - strand at 773.769 kb on - strand at 773.778 kb on - strand at 773.778 kb on - strand at 773.778 kb on - strand at 773.839 kb on + strand at 774.035 kb on - strand, within MMP_RS04085 at 774.096 kb on - strand, within MMP_RS04085 at 774.097 kb on + strand, within MMP_RS04085 at 774.114 kb on - strand, within MMP_RS04085 at 774.114 kb on - strand, within MMP_RS04085 at 774.115 kb on + strand, within MMP_RS04085 at 774.187 kb on - strand, within MMP_RS04085 at 774.224 kb on - strand, within MMP_RS04085 at 774.255 kb on + strand, within MMP_RS04085 at 774.277 kb on - strand, within MMP_RS04085 at 774.277 kb on - strand, within MMP_RS04085 at 774.283 kb on - strand, within MMP_RS04085 at 774.283 kb on - strand, within MMP_RS04085 at 774.284 kb on + strand, within MMP_RS04085 at 774.284 kb on + strand, within MMP_RS04085 at 774.295 kb on - strand, within MMP_RS04085 at 774.296 kb on + strand, within MMP_RS04085 at 774.329 kb on - strand, within MMP_RS04085
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations remove 772,462 - MMP_RS04070 0.89 -4.0 772,472 - MMP_RS04070 0.89 +0.8 772,539 + +0.7 773,208 - -0.1 773,251 + -1.1 773,386 + +0.8 773,630 + +0.7 773,633 - -1.1 773,633 - -4.9 773,635 - +0.2 773,636 + -1.8 773,636 + -0.1 773,716 - +0.2 773,717 + +2.2 773,717 + +2.3 773,744 + +0.2 773,759 - -0.1 773,759 - +0.7 773,762 - +1.1 773,769 - -2.6 773,778 - -1.8 773,778 - -0.3 773,778 - -0.2 773,839 + -0.7 774,035 - MMP_RS04085 0.16 -1.1 774,096 - MMP_RS04085 0.20 -2.2 774,097 + MMP_RS04085 0.20 +0.6 774,114 - MMP_RS04085 0.21 -0.2 774,114 - MMP_RS04085 0.21 +0.7 774,115 + MMP_RS04085 0.21 +0.7 774,187 - MMP_RS04085 0.26 +0.5 774,224 - MMP_RS04085 0.28 -0.2 774,255 + MMP_RS04085 0.30 -1.3 774,277 - MMP_RS04085 0.32 +1.2 774,277 - MMP_RS04085 0.32 +0.5 774,283 - MMP_RS04085 0.32 +0.2 774,283 - MMP_RS04085 0.32 -0.1 774,284 + MMP_RS04085 0.32 +0.6 774,284 + MMP_RS04085 0.32 +0.0 774,295 - MMP_RS04085 0.33 +0.7 774,296 + MMP_RS04085 0.33 +0.8 774,329 - MMP_RS04085 0.35 +0.0
Or see this region's nucleotide sequence