Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03960

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03955 and MMP_RS03960 are separated by 196 nucleotidesMMP_RS03960 and MMP_RS03965 are separated by 168 nucleotidesMMP_RS03965 and MMP_RS08885 are separated by 114 nucleotides MMP_RS03955: MMP_RS03955 - DUF3578 domain-containing protein, at 750,869 to 752,053 _RS03955 MMP_RS03960: MMP_RS03960 - hypothetical protein, at 752,250 to 752,480 _RS03960 MMP_RS03965: MMP_RS03965 - hypothetical protein, at 752,649 to 753,023 _RS03965 MMP_RS08885: MMP_RS08885 - tetratricopeptide repeat protein, at 753,138 to 753,662 _RS08885 Position (kb) 752 753Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 751.253 kb on + strand, within MMP_RS03955at 751.253 kb on + strand, within MMP_RS03955at 751.427 kb on - strand, within MMP_RS03955at 751.427 kb on - strand, within MMP_RS03955at 751.427 kb on - strand, within MMP_RS03955at 751.670 kb on + strand, within MMP_RS03955at 751.761 kb on - strand, within MMP_RS03955at 751.799 kb on + strand, within MMP_RS03955at 751.801 kb on + strand, within MMP_RS03955at 751.801 kb on + strand, within MMP_RS03955at 751.801 kb on + strand, within MMP_RS03955at 751.801 kb on + strand, within MMP_RS03955at 751.842 kb on + strand, within MMP_RS03955at 751.842 kb on + strand, within MMP_RS03955at 751.953 kb on + strandat 752.006 kb on + strandat 752.006 kb on + strandat 752.007 kb on - strandat 752.016 kb on + strandat 752.039 kb on - strandat 752.039 kb on - strandat 752.039 kb on - strandat 752.071 kb on + strandat 752.090 kb on - strandat 752.098 kb on - strandat 752.099 kb on + strandat 752.101 kb on - strandat 752.101 kb on - strandat 752.102 kb on + strandat 752.169 kb on + strandat 752.171 kb on - strandat 752.172 kb on + strandat 752.178 kb on + strandat 752.236 kb on - strandat 752.376 kb on - strand, within MMP_RS03960at 752.526 kb on + strandat 752.528 kb on - strandat 752.531 kb on - strandat 752.534 kb on - strandat 752.535 kb on + strandat 752.776 kb on - strand, within MMP_RS03965at 752.987 kb on - strandat 752.987 kb on - strandat 752.998 kb on + strandat 753.012 kb on - strandat 753.176 kb on - strandat 753.177 kb on + strandat 753.250 kb on + strand, within MMP_RS08885at 753.269 kb on - strand, within MMP_RS08885at 753.275 kb on - strand, within MMP_RS08885at 753.275 kb on - strand, within MMP_RS08885at 753.283 kb on + strand, within MMP_RS08885at 753.285 kb on - strand, within MMP_RS08885at 753.349 kb on + strand, within MMP_RS08885at 753.349 kb on + strand, within MMP_RS08885at 753.434 kb on - strand, within MMP_RS08885at 753.447 kb on - strand, within MMP_RS08885at 753.450 kb on - strand, within MMP_RS08885at 753.454 kb on - strand, within MMP_RS08885at 753.455 kb on + strand, within MMP_RS08885at 753.478 kb on - strand, within MMP_RS08885

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
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751,253 + MMP_RS03955 0.32 -0.5
751,253 + MMP_RS03955 0.32 -0.2
751,427 - MMP_RS03955 0.47 +0.3
751,427 - MMP_RS03955 0.47 +0.4
751,427 - MMP_RS03955 0.47 -4.4
751,670 + MMP_RS03955 0.68 +0.8
751,761 - MMP_RS03955 0.75 +0.7
751,799 + MMP_RS03955 0.78 -0.2
751,801 + MMP_RS03955 0.79 -0.6
751,801 + MMP_RS03955 0.79 +1.2
751,801 + MMP_RS03955 0.79 +1.1
751,801 + MMP_RS03955 0.79 +1.3
751,842 + MMP_RS03955 0.82 +1.0
751,842 + MMP_RS03955 0.82 -0.0
751,953 + -0.2
752,006 + -0.4
752,006 + -0.3
752,007 - -0.8
752,016 + -1.6
752,039 - -0.3
752,039 - +0.9
752,039 - -0.5
752,071 + +1.4
752,090 - -0.3
752,098 - -2.7
752,099 + -0.2
752,101 - +0.5
752,101 - +0.4
752,102 + -0.3
752,169 + -0.4
752,171 - +1.0
752,172 + -0.4
752,178 + -0.1
752,236 - +0.1
752,376 - MMP_RS03960 0.55 -4.8
752,526 + -5.6
752,528 - -1.8
752,531 - -3.9
752,534 - -3.4
752,535 + -4.8
752,776 - MMP_RS03965 0.34 +0.2
752,987 - +0.3
752,987 - +1.6
752,998 + -1.1
753,012 - -5.2
753,176 - -0.4
753,177 + +0.9
753,250 + MMP_RS08885 0.21 -0.1
753,269 - MMP_RS08885 0.25 +1.5
753,275 - MMP_RS08885 0.26 -0.7
753,275 - MMP_RS08885 0.26 -0.1
753,283 + MMP_RS08885 0.28 +0.6
753,285 - MMP_RS08885 0.28 -0.2
753,349 + MMP_RS08885 0.40 -0.4
753,349 + MMP_RS08885 0.40 +0.0
753,434 - MMP_RS08885 0.56 -0.4
753,447 - MMP_RS08885 0.59 -0.1
753,450 - MMP_RS08885 0.59 +0.5
753,454 - MMP_RS08885 0.60 -2.5
753,455 + MMP_RS08885 0.60 +0.9
753,478 - MMP_RS08885 0.65 +0.6

Or see this region's nucleotide sequence