Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03955 and MMP_RS03960 are separated by 196 nucleotides MMP_RS03960 and MMP_RS03965 are separated by 168 nucleotides MMP_RS03965 and MMP_RS08885 are separated by 114 nucleotides
MMP_RS03955: MMP_RS03955 - DUF3578 domain-containing protein, at 750,869 to 752,053
_RS03955
MMP_RS03960: MMP_RS03960 - hypothetical protein, at 752,250 to 752,480
_RS03960
MMP_RS03965: MMP_RS03965 - hypothetical protein, at 752,649 to 753,023
_RS03965
MMP_RS08885: MMP_RS08885 - tetratricopeptide repeat protein, at 753,138 to 753,662
_RS08885
Position (kb) 752
753 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 751.253 kb on + strand, within MMP_RS03955 at 751.253 kb on + strand, within MMP_RS03955 at 751.427 kb on - strand, within MMP_RS03955 at 751.427 kb on - strand, within MMP_RS03955 at 751.427 kb on - strand, within MMP_RS03955 at 751.670 kb on + strand, within MMP_RS03955 at 751.761 kb on - strand, within MMP_RS03955 at 751.799 kb on + strand, within MMP_RS03955 at 751.801 kb on + strand, within MMP_RS03955 at 751.801 kb on + strand, within MMP_RS03955 at 751.801 kb on + strand, within MMP_RS03955 at 751.801 kb on + strand, within MMP_RS03955 at 751.842 kb on + strand, within MMP_RS03955 at 751.842 kb on + strand, within MMP_RS03955 at 751.953 kb on + strand at 752.006 kb on + strand at 752.006 kb on + strand at 752.007 kb on - strand at 752.016 kb on + strand at 752.039 kb on - strand at 752.039 kb on - strand at 752.039 kb on - strand at 752.071 kb on + strand at 752.090 kb on - strand at 752.098 kb on - strand at 752.099 kb on + strand at 752.101 kb on - strand at 752.101 kb on - strand at 752.102 kb on + strand at 752.169 kb on + strand at 752.171 kb on - strand at 752.172 kb on + strand at 752.178 kb on + strand at 752.236 kb on - strand at 752.376 kb on - strand, within MMP_RS03960 at 752.526 kb on + strand at 752.528 kb on - strand at 752.531 kb on - strand at 752.534 kb on - strand at 752.535 kb on + strand at 752.776 kb on - strand, within MMP_RS03965 at 752.987 kb on - strand at 752.987 kb on - strand at 752.998 kb on + strand at 753.012 kb on - strand at 753.176 kb on - strand at 753.177 kb on + strand at 753.250 kb on + strand, within MMP_RS08885 at 753.269 kb on - strand, within MMP_RS08885 at 753.275 kb on - strand, within MMP_RS08885 at 753.275 kb on - strand, within MMP_RS08885 at 753.283 kb on + strand, within MMP_RS08885 at 753.285 kb on - strand, within MMP_RS08885 at 753.349 kb on + strand, within MMP_RS08885 at 753.349 kb on + strand, within MMP_RS08885 at 753.434 kb on - strand, within MMP_RS08885 at 753.447 kb on - strand, within MMP_RS08885 at 753.450 kb on - strand, within MMP_RS08885 at 753.454 kb on - strand, within MMP_RS08885 at 753.455 kb on + strand, within MMP_RS08885 at 753.478 kb on - strand, within MMP_RS08885
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations remove 751,253 + MMP_RS03955 0.32 -0.5 751,253 + MMP_RS03955 0.32 -0.2 751,427 - MMP_RS03955 0.47 +0.3 751,427 - MMP_RS03955 0.47 +0.4 751,427 - MMP_RS03955 0.47 -4.4 751,670 + MMP_RS03955 0.68 +0.8 751,761 - MMP_RS03955 0.75 +0.7 751,799 + MMP_RS03955 0.78 -0.2 751,801 + MMP_RS03955 0.79 -0.6 751,801 + MMP_RS03955 0.79 +1.2 751,801 + MMP_RS03955 0.79 +1.1 751,801 + MMP_RS03955 0.79 +1.3 751,842 + MMP_RS03955 0.82 +1.0 751,842 + MMP_RS03955 0.82 -0.0 751,953 + -0.2 752,006 + -0.4 752,006 + -0.3 752,007 - -0.8 752,016 + -1.6 752,039 - -0.3 752,039 - +0.9 752,039 - -0.5 752,071 + +1.4 752,090 - -0.3 752,098 - -2.7 752,099 + -0.2 752,101 - +0.5 752,101 - +0.4 752,102 + -0.3 752,169 + -0.4 752,171 - +1.0 752,172 + -0.4 752,178 + -0.1 752,236 - +0.1 752,376 - MMP_RS03960 0.55 -4.8 752,526 + -5.6 752,528 - -1.8 752,531 - -3.9 752,534 - -3.4 752,535 + -4.8 752,776 - MMP_RS03965 0.34 +0.2 752,987 - +0.3 752,987 - +1.6 752,998 + -1.1 753,012 - -5.2 753,176 - -0.4 753,177 + +0.9 753,250 + MMP_RS08885 0.21 -0.1 753,269 - MMP_RS08885 0.25 +1.5 753,275 - MMP_RS08885 0.26 -0.7 753,275 - MMP_RS08885 0.26 -0.1 753,283 + MMP_RS08885 0.28 +0.6 753,285 - MMP_RS08885 0.28 -0.2 753,349 + MMP_RS08885 0.40 -0.4 753,349 + MMP_RS08885 0.40 +0.0 753,434 - MMP_RS08885 0.56 -0.4 753,447 - MMP_RS08885 0.59 -0.1 753,450 - MMP_RS08885 0.59 +0.5 753,454 - MMP_RS08885 0.60 -2.5 753,455 + MMP_RS08885 0.60 +0.9 753,478 - MMP_RS08885 0.65 +0.6
Or see this region's nucleotide sequence