Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03930

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08880 and MMP_RS03930 are separated by 46 nucleotidesMMP_RS03930 and MMP_RS09040 are separated by 278 nucleotides MMP_RS08880: MMP_RS08880 - hypothetical protein, at 743,475 to 744,809 _RS08880 MMP_RS03930: MMP_RS03930 - DUF4263 domain-containing protein, at 744,856 to 746,163 _RS03930 MMP_RS09040: MMP_RS09040 - AAA family ATPase, at 746,442 to 748,256 _RS09040 Position (kb) 744 745 746 747Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 743.856 kb on - strand, within MMP_RS08880at 743.915 kb on + strand, within MMP_RS08880at 743.945 kb on - strand, within MMP_RS08880at 743.947 kb on - strand, within MMP_RS08880at 743.964 kb on + strand, within MMP_RS08880at 743.964 kb on + strand, within MMP_RS08880at 743.966 kb on + strand, within MMP_RS08880at 744.002 kb on + strand, within MMP_RS08880at 744.049 kb on - strand, within MMP_RS08880at 744.050 kb on + strand, within MMP_RS08880at 744.072 kb on + strand, within MMP_RS08880at 744.133 kb on - strand, within MMP_RS08880at 744.233 kb on + strand, within MMP_RS08880at 744.336 kb on + strand, within MMP_RS08880at 744.366 kb on + strand, within MMP_RS08880at 744.366 kb on + strand, within MMP_RS08880at 744.379 kb on - strand, within MMP_RS08880at 744.468 kb on - strand, within MMP_RS08880at 744.470 kb on - strand, within MMP_RS08880at 744.470 kb on - strand, within MMP_RS08880at 744.470 kb on - strand, within MMP_RS08880at 744.471 kb on + strand, within MMP_RS08880at 744.471 kb on + strand, within MMP_RS08880at 744.471 kb on + strand, within MMP_RS08880at 744.473 kb on - strand, within MMP_RS08880at 744.474 kb on + strand, within MMP_RS08880at 744.535 kb on + strand, within MMP_RS08880at 744.595 kb on - strand, within MMP_RS08880at 744.595 kb on - strand, within MMP_RS08880at 744.635 kb on - strand, within MMP_RS08880at 744.691 kb on - strandat 744.731 kb on - strandat 744.736 kb on - strandat 744.914 kb on + strandat 744.928 kb on - strandat 745.017 kb on - strand, within MMP_RS03930at 745.023 kb on + strand, within MMP_RS03930at 745.110 kb on + strand, within MMP_RS03930at 745.114 kb on + strand, within MMP_RS03930at 745.116 kb on + strand, within MMP_RS03930at 745.134 kb on - strand, within MMP_RS03930at 745.135 kb on + strand, within MMP_RS03930at 745.140 kb on - strand, within MMP_RS03930at 745.244 kb on - strand, within MMP_RS03930at 745.249 kb on + strand, within MMP_RS03930at 745.255 kb on - strand, within MMP_RS03930at 745.255 kb on - strand, within MMP_RS03930at 745.329 kb on - strand, within MMP_RS03930at 745.330 kb on + strand, within MMP_RS03930at 745.333 kb on - strand, within MMP_RS03930at 745.333 kb on - strand, within MMP_RS03930at 745.333 kb on - strand, within MMP_RS03930at 745.334 kb on + strand, within MMP_RS03930at 745.334 kb on + strand, within MMP_RS03930at 745.334 kb on + strand, within MMP_RS03930at 745.336 kb on - strand, within MMP_RS03930at 745.336 kb on - strand, within MMP_RS03930at 745.336 kb on - strand, within MMP_RS03930at 745.337 kb on + strand, within MMP_RS03930at 745.337 kb on + strand, within MMP_RS03930at 745.339 kb on + strand, within MMP_RS03930at 745.339 kb on + strand, within MMP_RS03930at 745.341 kb on - strand, within MMP_RS03930at 745.342 kb on + strand, within MMP_RS03930at 745.343 kb on - strand, within MMP_RS03930at 745.344 kb on + strand, within MMP_RS03930at 745.344 kb on + strand, within MMP_RS03930at 745.344 kb on + strand, within MMP_RS03930at 745.344 kb on + strand, within MMP_RS03930at 745.520 kb on + strand, within MMP_RS03930at 745.622 kb on - strand, within MMP_RS03930at 745.669 kb on - strand, within MMP_RS03930at 745.670 kb on + strand, within MMP_RS03930at 745.670 kb on + strand, within MMP_RS03930at 745.721 kb on + strand, within MMP_RS03930at 745.879 kb on - strand, within MMP_RS03930at 745.994 kb on - strand, within MMP_RS03930at 745.994 kb on - strand, within MMP_RS03930at 745.995 kb on + strand, within MMP_RS03930at 745.997 kb on - strand, within MMP_RS03930at 745.997 kb on - strand, within MMP_RS03930at 745.997 kb on - strand, within MMP_RS03930at 745.999 kb on - strand, within MMP_RS03930at 745.999 kb on - strand, within MMP_RS03930at 745.999 kb on - strand, within MMP_RS03930at 746.000 kb on + strand, within MMP_RS03930at 746.028 kb on - strand, within MMP_RS03930at 746.035 kb on - strandat 746.035 kb on - strandat 746.036 kb on + strandat 746.110 kb on - strandat 746.143 kb on - strandat 746.154 kb on - strandat 746.164 kb on + strandat 746.226 kb on - strandat 746.226 kb on - strandat 746.226 kb on - strandat 746.226 kb on - strandat 746.227 kb on + strandat 746.228 kb on - strandat 746.228 kb on - strandat 746.228 kb on - strandat 746.229 kb on + strandat 746.229 kb on + strandat 746.229 kb on + strandat 746.232 kb on - strandat 746.238 kb on + strandat 746.313 kb on + strandat 746.356 kb on - strandat 746.361 kb on + strandat 746.373 kb on + strandat 746.568 kb on - strandat 746.570 kb on - strandat 746.574 kb on + strandat 746.575 kb on - strandat 746.575 kb on - strandat 746.576 kb on + strandat 746.598 kb on - strandat 746.602 kb on - strandat 746.665 kb on + strand, within MMP_RS09040at 746.732 kb on - strand, within MMP_RS09040at 746.733 kb on + strand, within MMP_RS09040at 746.733 kb on + strand, within MMP_RS09040at 746.736 kb on - strand, within MMP_RS09040at 746.742 kb on + strand, within MMP_RS09040at 747.031 kb on - strand, within MMP_RS09040at 747.048 kb on - strand, within MMP_RS09040at 747.049 kb on + strand, within MMP_RS09040at 747.058 kb on - strand, within MMP_RS09040at 747.102 kb on - strand, within MMP_RS09040at 747.108 kb on - strand, within MMP_RS09040

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
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743,856 - MMP_RS08880 0.29 -1.4
743,915 + MMP_RS08880 0.33 -0.8
743,945 - MMP_RS08880 0.35 -0.4
743,947 - MMP_RS08880 0.35 -0.9
743,964 + MMP_RS08880 0.37 +0.1
743,964 + MMP_RS08880 0.37 +1.4
743,966 + MMP_RS08880 0.37 +0.4
744,002 + MMP_RS08880 0.39 +2.9
744,049 - MMP_RS08880 0.43 +1.5
744,050 + MMP_RS08880 0.43 +1.2
744,072 + MMP_RS08880 0.45 -0.1
744,133 - MMP_RS08880 0.49 -1.0
744,233 + MMP_RS08880 0.57 +0.1
744,336 + MMP_RS08880 0.64 +3.7
744,366 + MMP_RS08880 0.67 -0.0
744,366 + MMP_RS08880 0.67 -1.0
744,379 - MMP_RS08880 0.68 -0.9
744,468 - MMP_RS08880 0.74 -1.5
744,470 - MMP_RS08880 0.75 +2.6
744,470 - MMP_RS08880 0.75 +0.1
744,470 - MMP_RS08880 0.75 -0.1
744,471 + MMP_RS08880 0.75 +1.7
744,471 + MMP_RS08880 0.75 +0.3
744,471 + MMP_RS08880 0.75 -0.3
744,473 - MMP_RS08880 0.75 -1.6
744,474 + MMP_RS08880 0.75 -0.5
744,535 + MMP_RS08880 0.79 +0.4
744,595 - MMP_RS08880 0.84 +1.0
744,595 - MMP_RS08880 0.84 -0.1
744,635 - MMP_RS08880 0.87 +0.3
744,691 - -0.2
744,731 - -0.1
744,736 - -0.7
744,914 + -0.1
744,928 - +1.2
745,017 - MMP_RS03930 0.12 +0.8
745,023 + MMP_RS03930 0.13 +0.0
745,110 + MMP_RS03930 0.19 +0.4
745,114 + MMP_RS03930 0.20 +2.5
745,116 + MMP_RS03930 0.20 -0.4
745,134 - MMP_RS03930 0.21 +0.3
745,135 + MMP_RS03930 0.21 -0.7
745,140 - MMP_RS03930 0.22 -0.4
745,244 - MMP_RS03930 0.30 -2.4
745,249 + MMP_RS03930 0.30 -0.8
745,255 - MMP_RS03930 0.31 -1.8
745,255 - MMP_RS03930 0.31 +1.6
745,329 - MMP_RS03930 0.36 +1.3
745,330 + MMP_RS03930 0.36 +1.0
745,333 - MMP_RS03930 0.36 -0.1
745,333 - MMP_RS03930 0.36 -0.4
745,333 - MMP_RS03930 0.36 +0.1
745,334 + MMP_RS03930 0.37 +0.9
745,334 + MMP_RS03930 0.37 -1.5
745,334 + MMP_RS03930 0.37 -0.1
745,336 - MMP_RS03930 0.37 +0.5
745,336 - MMP_RS03930 0.37 -1.1
745,336 - MMP_RS03930 0.37 -0.3
745,337 + MMP_RS03930 0.37 -1.1
745,337 + MMP_RS03930 0.37 +1.1
745,339 + MMP_RS03930 0.37 -1.8
745,339 + MMP_RS03930 0.37 -1.1
745,341 - MMP_RS03930 0.37 +1.4
745,342 + MMP_RS03930 0.37 -4.0
745,343 - MMP_RS03930 0.37 +0.4
745,344 + MMP_RS03930 0.37 +0.7
745,344 + MMP_RS03930 0.37 -1.8
745,344 + MMP_RS03930 0.37 -0.6
745,344 + MMP_RS03930 0.37 -1.7
745,520 + MMP_RS03930 0.51 +0.7
745,622 - MMP_RS03930 0.59 -0.4
745,669 - MMP_RS03930 0.62 -0.4
745,670 + MMP_RS03930 0.62 -5.6
745,670 + MMP_RS03930 0.62 +0.9
745,721 + MMP_RS03930 0.66 +0.4
745,879 - MMP_RS03930 0.78 +0.3
745,994 - MMP_RS03930 0.87 -0.9
745,994 - MMP_RS03930 0.87 +1.0
745,995 + MMP_RS03930 0.87 +0.4
745,997 - MMP_RS03930 0.87 +1.1
745,997 - MMP_RS03930 0.87 +0.4
745,997 - MMP_RS03930 0.87 +0.1
745,999 - MMP_RS03930 0.87 +1.5
745,999 - MMP_RS03930 0.87 +0.1
745,999 - MMP_RS03930 0.87 +0.3
746,000 + MMP_RS03930 0.87 -0.2
746,028 - MMP_RS03930 0.90 -1.0
746,035 - +0.1
746,035 - +0.8
746,036 + +1.3
746,110 - +0.4
746,143 - -0.1
746,154 - -1.4
746,164 + -1.2
746,226 - +0.7
746,226 - -0.2
746,226 - +1.5
746,226 - +0.7
746,227 + +0.2
746,228 - +1.7
746,228 - +0.9
746,228 - -0.1
746,229 + +0.5
746,229 + -0.0
746,229 + +0.1
746,232 - +0.0
746,238 + +0.8
746,313 + +1.0
746,356 - -4.6
746,361 + +1.1
746,373 + -2.4
746,568 - +0.2
746,570 - -0.8
746,574 + +0.6
746,575 - +1.3
746,575 - -0.2
746,576 + -0.3
746,598 - +1.3
746,602 - -0.4
746,665 + MMP_RS09040 0.12 -0.1
746,732 - MMP_RS09040 0.16 -0.9
746,733 + MMP_RS09040 0.16 +0.8
746,733 + MMP_RS09040 0.16 +0.5
746,736 - MMP_RS09040 0.16 +0.6
746,742 + MMP_RS09040 0.17 +0.1
747,031 - MMP_RS09040 0.32 -1.0
747,048 - MMP_RS09040 0.33 +0.0
747,049 + MMP_RS09040 0.33 -0.0
747,058 - MMP_RS09040 0.34 +0.0
747,102 - MMP_RS09040 0.36 -0.3
747,108 - MMP_RS09040 0.37 +0.6

Or see this region's nucleotide sequence