Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03580 and MMP_RS03585 are separated by 163 nucleotides MMP_RS03585 and MMP_RS03590 are separated by 121 nucleotides MMP_RS03590 and MMP_RS03595 are separated by 400 nucleotides
MMP_RS03580: MMP_RS03580 - signal recognition particle-docking protein FtsY, at 671,197 to 672,348
_RS03580
MMP_RS03585: MMP_RS03585 - Hsp20/alpha crystallin family protein, at 672,512 to 672,976
_RS03585
MMP_RS03590: MMP_RS03590 - METTL5 family protein, at 673,098 to 673,739
_RS03590
MMP_RS03595: MMP_RS03595 - 2-amino-3 7-dideoxy-D-threo-hept-6-ulosonate synthase, at 674,140 to 674,958
_RS03595
Position (kb) 673
674 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 672.382 kb on - strand at 672.392 kb on + strand at 672.412 kb on - strand at 672.416 kb on + strand at 672.422 kb on + strand at 672.425 kb on - strand at 672.425 kb on - strand at 672.434 kb on - strand at 672.507 kb on + strand at 672.507 kb on + strand at 672.666 kb on - strand, within MMP_RS03585 at 672.848 kb on - strand, within MMP_RS03585 at 673.000 kb on - strand at 673.028 kb on + strand at 673.050 kb on - strand at 673.052 kb on - strand at 673.096 kb on - strand at 673.274 kb on - strand, within MMP_RS03590 at 673.275 kb on + strand, within MMP_RS03590 at 673.275 kb on + strand, within MMP_RS03590 at 673.277 kb on + strand, within MMP_RS03590 at 673.580 kb on + strand, within MMP_RS03590 at 673.615 kb on + strand, within MMP_RS03590 at 673.648 kb on - strand, within MMP_RS03590 at 673.793 kb on - strand at 673.796 kb on + strand at 673.799 kb on - strand at 673.799 kb on - strand at 673.897 kb on + strand at 673.976 kb on + strand at 674.076 kb on + strand at 674.087 kb on - strand at 674.087 kb on - strand at 674.087 kb on - strand at 674.087 kb on - strand at 674.090 kb on + strand at 674.090 kb on + strand at 674.596 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations remove 672,382 - -1.0 672,392 + -4.2 672,412 - -0.1 672,416 + -0.4 672,422 + -0.1 672,425 - -0.4 672,425 - -1.8 672,434 - +0.2 672,507 + -3.4 672,507 + -1.9 672,666 - MMP_RS03585 0.33 -1.5 672,848 - MMP_RS03585 0.72 -3.5 673,000 - +1.0 673,028 + +0.7 673,050 - -0.5 673,052 - -1.7 673,096 - -1.6 673,274 - MMP_RS03590 0.27 -5.5 673,275 + MMP_RS03590 0.28 -6.3 673,275 + MMP_RS03590 0.28 -4.3 673,277 + MMP_RS03590 0.28 -2.5 673,580 + MMP_RS03590 0.75 -1.6 673,615 + MMP_RS03590 0.81 -5.5 673,648 - MMP_RS03590 0.86 -5.6 673,793 - -3.9 673,796 + -2.6 673,799 - -2.4 673,799 - -2.0 673,897 + -2.3 673,976 + -1.8 674,076 + -2.4 674,087 - -4.3 674,087 - -3.8 674,087 - -3.0 674,087 - -2.6 674,090 + -2.3 674,090 + -1.5 674,596 - -1.2
Or see this region's nucleotide sequence