Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03435

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03430 and MMP_RS03435 are separated by 119 nucleotidesMMP_RS03435 and MMP_RS03440 are separated by 57 nucleotidesMMP_RS03440 and MMP_RS03445 are separated by 75 nucleotidesMMP_RS03445 and MMP_RS03450 are separated by 74 nucleotides MMP_RS03430: MMP_RS03430 - bile acid:sodium symporter family protein, at 644,644 to 645,609 _RS03430 MMP_RS03435: MMP_RS03435 - ketol-acid reductoisomerase, at 645,729 to 646,721 _RS03435 MMP_RS03440: MMP_RS03440 - MoaD/ThiS family protein, at 646,779 to 646,973 _RS03440 MMP_RS03445: MMP_RS03445 - methanogenesis marker 17 protein, at 647,049 to 647,600 _RS03445 MMP_RS03450: MMP_RS03450 - glycine synthesis protein GlyXS (from data), at 647,675 to 647,947 _RS03450 Position (kb) 645 646 647Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 644.864 kb on - strand, within MMP_RS03430at 644.865 kb on + strand, within MMP_RS03430at 644.895 kb on - strand, within MMP_RS03430at 644.895 kb on - strand, within MMP_RS03430at 644.971 kb on - strand, within MMP_RS03430at 645.014 kb on + strand, within MMP_RS03430at 645.042 kb on - strand, within MMP_RS03430at 645.048 kb on - strand, within MMP_RS03430at 645.107 kb on - strand, within MMP_RS03430at 645.146 kb on + strand, within MMP_RS03430at 645.230 kb on - strand, within MMP_RS03430at 645.231 kb on + strand, within MMP_RS03430at 645.231 kb on + strand, within MMP_RS03430at 645.231 kb on + strand, within MMP_RS03430at 645.314 kb on + strand, within MMP_RS03430at 645.319 kb on + strand, within MMP_RS03430at 645.417 kb on - strand, within MMP_RS03430at 645.491 kb on + strand, within MMP_RS03430at 645.683 kb on + strandat 645.700 kb on + strandat 645.737 kb on + strandat 645.755 kb on - strandat 645.917 kb on + strand, within MMP_RS03435at 645.965 kb on + strand, within MMP_RS03435at 645.965 kb on + strand, within MMP_RS03435at 646.615 kb on - strand, within MMP_RS03435at 646.660 kb on - strandat 646.720 kb on + strandat 646.870 kb on - strand, within MMP_RS03440at 646.979 kb on - strandat 646.983 kb on - strandat 646.984 kb on + strandat 646.987 kb on - strandat 646.997 kb on + strandat 647.001 kb on - strandat 647.002 kb on + strandat 647.002 kb on + strandat 647.004 kb on + strandat 647.018 kb on - strandat 647.055 kb on - strandat 647.407 kb on - strand, within MMP_RS03445at 647.695 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
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644,864 - MMP_RS03430 0.23 +0.2
644,865 + MMP_RS03430 0.23 +2.5
644,895 - MMP_RS03430 0.26 -1.5
644,895 - MMP_RS03430 0.26 +1.2
644,971 - MMP_RS03430 0.34 +0.9
645,014 + MMP_RS03430 0.38 +0.1
645,042 - MMP_RS03430 0.41 +0.6
645,048 - MMP_RS03430 0.42 +0.6
645,107 - MMP_RS03430 0.48 +0.3
645,146 + MMP_RS03430 0.52 +0.3
645,230 - MMP_RS03430 0.61 +1.0
645,231 + MMP_RS03430 0.61 +0.7
645,231 + MMP_RS03430 0.61 +1.3
645,231 + MMP_RS03430 0.61 +1.0
645,314 + MMP_RS03430 0.69 -0.9
645,319 + MMP_RS03430 0.70 -1.0
645,417 - MMP_RS03430 0.80 +0.1
645,491 + MMP_RS03430 0.88 +1.0
645,683 + -4.7
645,700 + -3.3
645,737 + -4.3
645,755 - -3.5
645,917 + MMP_RS03435 0.19 -3.9
645,965 + MMP_RS03435 0.24 -2.6
645,965 + MMP_RS03435 0.24 -2.2
646,615 - MMP_RS03435 0.89 -2.8
646,660 - -3.0
646,720 + -1.9
646,870 - MMP_RS03440 0.47 -1.8
646,979 - -1.1
646,983 - -0.9
646,984 + -1.4
646,987 - -4.6
646,997 + -0.2
647,001 - -4.5
647,002 + -4.8
647,002 + -5.7
647,004 + -3.0
647,018 - -4.2
647,055 - -4.4
647,407 - MMP_RS03445 0.65 -5.4
647,695 - +1.2

Or see this region's nucleotide sequence