Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03430 and MMP_RS03435 are separated by 119 nucleotides MMP_RS03435 and MMP_RS03440 are separated by 57 nucleotides MMP_RS03440 and MMP_RS03445 are separated by 75 nucleotides MMP_RS03445 and MMP_RS03450 are separated by 74 nucleotides
MMP_RS03430: MMP_RS03430 - bile acid:sodium symporter family protein, at 644,644 to 645,609
_RS03430
MMP_RS03435: MMP_RS03435 - ketol-acid reductoisomerase, at 645,729 to 646,721
_RS03435
MMP_RS03440: MMP_RS03440 - MoaD/ThiS family protein, at 646,779 to 646,973
_RS03440
MMP_RS03445: MMP_RS03445 - methanogenesis marker 17 protein, at 647,049 to 647,600
_RS03445
MMP_RS03450: MMP_RS03450 - glycine synthesis protein GlyXS <small>(from data)</small>, at 647,675 to 647,947
_RS03450
Position (kb) 645
646
647 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 644.864 kb on - strand, within MMP_RS03430 at 644.865 kb on + strand, within MMP_RS03430 at 644.895 kb on - strand, within MMP_RS03430 at 644.895 kb on - strand, within MMP_RS03430 at 644.971 kb on - strand, within MMP_RS03430 at 645.014 kb on + strand, within MMP_RS03430 at 645.042 kb on - strand, within MMP_RS03430 at 645.048 kb on - strand, within MMP_RS03430 at 645.107 kb on - strand, within MMP_RS03430 at 645.146 kb on + strand, within MMP_RS03430 at 645.230 kb on - strand, within MMP_RS03430 at 645.231 kb on + strand, within MMP_RS03430 at 645.231 kb on + strand, within MMP_RS03430 at 645.231 kb on + strand, within MMP_RS03430 at 645.314 kb on + strand, within MMP_RS03430 at 645.319 kb on + strand, within MMP_RS03430 at 645.417 kb on - strand, within MMP_RS03430 at 645.491 kb on + strand, within MMP_RS03430 at 645.683 kb on + strand at 645.700 kb on + strand at 645.737 kb on + strand at 645.755 kb on - strand at 645.917 kb on + strand, within MMP_RS03435 at 645.965 kb on + strand, within MMP_RS03435 at 645.965 kb on + strand, within MMP_RS03435 at 646.615 kb on - strand, within MMP_RS03435 at 646.660 kb on - strand at 646.720 kb on + strand at 646.870 kb on - strand, within MMP_RS03440 at 646.979 kb on - strand at 646.983 kb on - strand at 646.984 kb on + strand at 646.987 kb on - strand at 646.997 kb on + strand at 647.001 kb on - strand at 647.002 kb on + strand at 647.002 kb on + strand at 647.004 kb on + strand at 647.018 kb on - strand at 647.055 kb on - strand at 647.407 kb on - strand, within MMP_RS03445 at 647.695 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations remove 644,864 - MMP_RS03430 0.23 +0.2 644,865 + MMP_RS03430 0.23 +2.5 644,895 - MMP_RS03430 0.26 -1.5 644,895 - MMP_RS03430 0.26 +1.2 644,971 - MMP_RS03430 0.34 +0.9 645,014 + MMP_RS03430 0.38 +0.1 645,042 - MMP_RS03430 0.41 +0.6 645,048 - MMP_RS03430 0.42 +0.6 645,107 - MMP_RS03430 0.48 +0.3 645,146 + MMP_RS03430 0.52 +0.3 645,230 - MMP_RS03430 0.61 +1.0 645,231 + MMP_RS03430 0.61 +0.7 645,231 + MMP_RS03430 0.61 +1.3 645,231 + MMP_RS03430 0.61 +1.0 645,314 + MMP_RS03430 0.69 -0.9 645,319 + MMP_RS03430 0.70 -1.0 645,417 - MMP_RS03430 0.80 +0.1 645,491 + MMP_RS03430 0.88 +1.0 645,683 + -4.7 645,700 + -3.3 645,737 + -4.3 645,755 - -3.5 645,917 + MMP_RS03435 0.19 -3.9 645,965 + MMP_RS03435 0.24 -2.6 645,965 + MMP_RS03435 0.24 -2.2 646,615 - MMP_RS03435 0.89 -2.8 646,660 - -3.0 646,720 + -1.9 646,870 - MMP_RS03440 0.47 -1.8 646,979 - -1.1 646,983 - -0.9 646,984 + -1.4 646,987 - -4.6 646,997 + -0.2 647,001 - -4.5 647,002 + -4.8 647,002 + -5.7 647,004 + -3.0 647,018 - -4.2 647,055 - -4.4 647,407 - MMP_RS03445 0.65 -5.4 647,695 - +1.2
Or see this region's nucleotide sequence