Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03400

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03390 and MMP_RS03395 are separated by 212 nucleotidesMMP_RS03395 and MMP_RS03400 are separated by 1 nucleotidesMMP_RS03400 and MMP_RS03405 are separated by 3 nucleotides MMP_RS03390: MMP_RS03390 - malate dehydrogenase, at 636,877 to 637,821 _RS03390 MMP_RS03395: MMP_RS03395 - hypothetical protein, at 638,034 to 638,234 _RS03395 MMP_RS03400: MMP_RS03400 - archease, at 638,236 to 638,652 _RS03400 MMP_RS03405: MMP_RS03405 - RNA 3'-terminal phosphate cyclase, at 638,656 to 639,675 _RS03405 Position (kb) 638 639Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 637.352 kb on + strand, within MMP_RS03390at 637.433 kb on - strand, within MMP_RS03390at 637.441 kb on - strand, within MMP_RS03390at 637.469 kb on + strand, within MMP_RS03390at 637.476 kb on - strand, within MMP_RS03390at 637.502 kb on + strand, within MMP_RS03390at 637.582 kb on + strand, within MMP_RS03390at 637.586 kb on + strand, within MMP_RS03390at 637.594 kb on + strand, within MMP_RS03390at 637.821 kb on - strandat 637.836 kb on - strandat 637.837 kb on + strandat 637.841 kb on + strandat 637.864 kb on - strandat 637.866 kb on - strandat 637.866 kb on - strandat 637.867 kb on + strandat 637.870 kb on - strandat 637.870 kb on - strandat 637.871 kb on + strandat 637.871 kb on + strandat 637.872 kb on - strandat 637.873 kb on + strandat 637.873 kb on + strandat 637.874 kb on - strandat 637.874 kb on - strandat 637.887 kb on + strandat 637.919 kb on + strandat 637.922 kb on - strandat 637.923 kb on + strandat 637.927 kb on + strandat 638.002 kb on - strandat 638.002 kb on - strandat 638.006 kb on - strandat 638.054 kb on - strand, within MMP_RS03395at 638.127 kb on + strand, within MMP_RS03395at 638.132 kb on - strand, within MMP_RS03395at 638.212 kb on + strand, within MMP_RS03395at 638.315 kb on + strand, within MMP_RS03400at 638.374 kb on - strand, within MMP_RS03400at 638.375 kb on + strand, within MMP_RS03400at 638.473 kb on - strand, within MMP_RS03400at 638.473 kb on - strand, within MMP_RS03400at 638.647 kb on + strandat 638.648 kb on - strandat 638.653 kb on + strandat 638.677 kb on - strandat 638.677 kb on - strandat 638.677 kb on - strandat 638.677 kb on - strandat 638.677 kb on - strandat 638.677 kb on - strandat 638.751 kb on + strandat 638.951 kb on - strand, within MMP_RS03405at 638.952 kb on + strand, within MMP_RS03405at 639.010 kb on + strand, within MMP_RS03405at 639.060 kb on - strand, within MMP_RS03405at 639.075 kb on - strand, within MMP_RS03405at 639.388 kb on + strand, within MMP_RS03405at 639.402 kb on - strand, within MMP_RS03405at 639.451 kb on - strand, within MMP_RS03405at 639.470 kb on + strand, within MMP_RS03405at 639.567 kb on - strand, within MMP_RS03405

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
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637,352 + MMP_RS03390 0.50 -3.5
637,433 - MMP_RS03390 0.59 -4.6
637,441 - MMP_RS03390 0.60 -5.1
637,469 + MMP_RS03390 0.63 -4.5
637,476 - MMP_RS03390 0.63 -0.6
637,502 + MMP_RS03390 0.66 -4.1
637,582 + MMP_RS03390 0.75 -3.1
637,586 + MMP_RS03390 0.75 -2.6
637,594 + MMP_RS03390 0.76 -4.2
637,821 - -3.3
637,836 - -2.3
637,837 + -4.9
637,841 + -5.2
637,864 - -0.0
637,866 - -2.5
637,866 - -0.7
637,867 + -5.3
637,870 - -2.4
637,870 - -5.0
637,871 + -5.4
637,871 + -2.1
637,872 - -1.0
637,873 + -1.2
637,873 + +0.5
637,874 - +1.4
637,874 - -0.8
637,887 + +0.5
637,919 + +0.5
637,922 - +0.7
637,923 + +0.4
637,927 + +0.2
638,002 - +0.1
638,002 - +1.7
638,006 - +0.7
638,054 - MMP_RS03395 0.10 +0.6
638,127 + MMP_RS03395 0.46 +1.2
638,132 - MMP_RS03395 0.49 -0.8
638,212 + MMP_RS03395 0.89 +1.9
638,315 + MMP_RS03400 0.19 -3.0
638,374 - MMP_RS03400 0.33 -4.1
638,375 + MMP_RS03400 0.33 -3.4
638,473 - MMP_RS03400 0.57 -3.5
638,473 - MMP_RS03400 0.57 -4.7
638,647 + -4.5
638,648 - -4.5
638,653 + -4.6
638,677 - +1.2
638,677 - +1.1
638,677 - -0.6
638,677 - +0.4
638,677 - +0.5
638,677 - -1.4
638,751 + +1.7
638,951 - MMP_RS03405 0.29 +1.4
638,952 + MMP_RS03405 0.29 -3.8
639,010 + MMP_RS03405 0.35 -3.3
639,060 - MMP_RS03405 0.40 +0.7
639,075 - MMP_RS03405 0.41 +0.2
639,388 + MMP_RS03405 0.72 -0.1
639,402 - MMP_RS03405 0.73 -0.4
639,451 - MMP_RS03405 0.78 -1.1
639,470 + MMP_RS03405 0.80 +1.4
639,567 - MMP_RS03405 0.89 +2.0

Or see this region's nucleotide sequence