Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03300

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS03290 and MMP_RS03295 are separated by 9 nucleotidesMMP_RS03295 and MMP_RS03300 are separated by 323 nucleotidesMMP_RS03300 and MMP_RS03305 are separated by 168 nucleotidesMMP_RS03305 and MMP_RS03310 are separated by 177 nucleotides MMP_RS03290: MMP_RS03290 - AAA family ATPase, at 619,232 to 619,768 _RS03290 MMP_RS03295: MMP_RS03295 - 50S ribosomal protein L34e, at 619,778 to 620,047 _RS03295 MMP_RS03300: MMP_RS03300 - TOBE domain-containing protein, at 620,371 to 620,577 _RS03300 MMP_RS03305: MMP_RS03305 - winged helix-turn-helix domain-containing protein, at 620,746 to 621,144 _RS03305 MMP_RS03310: MMP_RS03310 - ferrous iron transport protein B, at 621,322 to 623,265 _RS03310 Position (kb) 620 621Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 620.050 kb on - strandat 620.120 kb on - strandat 620.200 kb on - strandat 620.256 kb on - strandat 620.256 kb on - strandat 620.297 kb on - strandat 620.298 kb on + strandat 620.314 kb on - strandat 620.315 kb on + strandat 620.336 kb on - strandat 620.368 kb on - strandat 620.369 kb on + strandat 620.369 kb on + strandat 620.370 kb on - strandat 620.382 kb on - strandat 620.546 kb on - strand, within MMP_RS03300at 620.642 kb on - strandat 620.643 kb on + strandat 620.645 kb on + strandat 620.662 kb on + strandat 620.664 kb on + strandat 620.679 kb on + strandat 620.682 kb on - strandat 620.682 kb on - strandat 620.683 kb on + strandat 620.685 kb on + strandat 620.685 kb on + strandat 620.686 kb on - strandat 620.692 kb on - strandat 620.716 kb on + strandat 620.793 kb on + strand, within MMP_RS03305at 620.793 kb on + strand, within MMP_RS03305at 620.793 kb on + strand, within MMP_RS03305at 620.793 kb on + strand, within MMP_RS03305at 620.835 kb on + strand, within MMP_RS03305at 620.859 kb on - strand, within MMP_RS03305at 620.859 kb on - strand, within MMP_RS03305at 620.859 kb on - strand, within MMP_RS03305at 620.891 kb on - strand, within MMP_RS03305at 620.930 kb on + strand, within MMP_RS03305at 621.127 kb on + strandat 621.142 kb on - strandat 621.167 kb on + strandat 621.196 kb on - strandat 621.239 kb on - strandat 621.239 kb on - strandat 621.267 kb on - strandat 621.268 kb on + strandat 621.268 kb on + strandat 621.271 kb on - strandat 621.273 kb on - strandat 621.323 kb on - strandat 621.334 kb on - strandat 621.334 kb on - strandat 621.350 kb on - strandat 621.350 kb on - strandat 621.355 kb on - strandat 621.390 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
remove
620,050 - -2.2
620,120 - +0.0
620,200 - +0.2
620,256 - -4.2
620,256 - +0.4
620,297 - +0.8
620,298 + +0.4
620,314 - -0.1
620,315 + -0.8
620,336 - +0.4
620,368 - -0.3
620,369 + +2.0
620,369 + +1.5
620,370 - +0.8
620,382 - +1.5
620,546 - MMP_RS03300 0.85 -4.1
620,642 - +0.1
620,643 + +0.7
620,645 + -1.3
620,662 + +0.7
620,664 + -0.0
620,679 + +0.5
620,682 - -0.6
620,682 - -4.3
620,683 + -4.8
620,685 + -1.2
620,685 + +0.2
620,686 - -3.9
620,692 - -5.5
620,716 + -0.6
620,793 + MMP_RS03305 0.12 -2.4
620,793 + MMP_RS03305 0.12 -3.6
620,793 + MMP_RS03305 0.12 -1.9
620,793 + MMP_RS03305 0.12 -0.7
620,835 + MMP_RS03305 0.22 -6.0
620,859 - MMP_RS03305 0.28 -5.1
620,859 - MMP_RS03305 0.28 +0.2
620,859 - MMP_RS03305 0.28 -4.8
620,891 - MMP_RS03305 0.36 -1.8
620,930 + MMP_RS03305 0.46 +1.0
621,127 + +0.5
621,142 - +0.3
621,167 + +0.2
621,196 - +0.4
621,239 - +0.3
621,239 - +1.1
621,267 - +0.9
621,268 + +1.0
621,268 + +0.8
621,271 - +0.7
621,273 - +0.0
621,323 - -0.4
621,334 - -4.7
621,334 - -4.5
621,350 - -4.2
621,350 - -3.0
621,355 - -2.4
621,390 + -2.6

Or see this region's nucleotide sequence