Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03200 and MMP_RS03205 are separated by 136 nucleotides MMP_RS03205 and MMP_RS03210 are separated by 147 nucleotides
MMP_RS03200: MMP_RS03200 - methanogenesis marker 15 protein, at 603,102 to 604,337
_RS03200
MMP_RS03205: MMP_RS03205 - peptidyl-tRNA hydrolase Pth2, at 604,474 to 604,824
_RS03205
MMP_RS03210: MMP_RS03210 - tRNA guanosine(15) transglycosylase TgtA, at 604,972 to 606,921
_RS03210
Position (kb) 604
605 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 603.854 kb on - strand at 604.216 kb on - strand at 604.242 kb on + strand at 604.429 kb on - strand at 604.430 kb on + strand at 604.434 kb on - strand at 604.475 kb on - strand at 604.481 kb on + strand at 604.486 kb on - strand at 604.545 kb on - strand, within MMP_RS03205 at 604.699 kb on + strand, within MMP_RS03205 at 604.821 kb on + strand at 604.876 kb on + strand at 604.879 kb on + strand at 604.880 kb on - strand at 604.881 kb on + strand at 604.881 kb on + strand at 604.885 kb on + strand at 604.885 kb on + strand at 604.885 kb on + strand at 604.885 kb on + strand at 604.916 kb on - strand at 604.961 kb on + strand at 604.961 kb on + strand at 605.147 kb on - strand at 605.270 kb on - strand, within MMP_RS03210 at 605.270 kb on - strand, within MMP_RS03210 at 605.271 kb on + strand, within MMP_RS03210 at 605.457 kb on - strand, within MMP_RS03210 at 605.467 kb on + strand, within MMP_RS03210 at 605.483 kb on + strand, within MMP_RS03210 at 605.555 kb on - strand, within MMP_RS03210 at 605.555 kb on - strand, within MMP_RS03210 at 605.601 kb on - strand, within MMP_RS03210 at 605.749 kb on - strand, within MMP_RS03210 at 605.822 kb on - strand, within MMP_RS03210 at 605.823 kb on + strand, within MMP_RS03210 at 605.823 kb on + strand, within MMP_RS03210 at 605.823 kb on + strand, within MMP_RS03210
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations remove 603,854 - -3.3 604,216 - -2.5 604,242 + -3.8 604,429 - -0.9 604,430 + -0.1 604,434 - +0.6 604,475 - -0.1 604,481 + -0.9 604,486 - -5.7 604,545 - MMP_RS03205 0.20 -5.0 604,699 + MMP_RS03205 0.64 -3.5 604,821 + -4.4 604,876 + -0.7 604,879 + -5.4 604,880 - -1.0 604,881 + -3.9 604,881 + -0.8 604,885 + +0.3 604,885 + -0.7 604,885 + -1.8 604,885 + -1.1 604,916 - -0.7 604,961 + -0.6 604,961 + -1.2 605,147 - -0.5 605,270 - MMP_RS03210 0.15 -2.8 605,270 - MMP_RS03210 0.15 -5.1 605,271 + MMP_RS03210 0.15 -0.7 605,457 - MMP_RS03210 0.25 -2.2 605,467 + MMP_RS03210 0.25 -0.0 605,483 + MMP_RS03210 0.26 +0.8 605,555 - MMP_RS03210 0.30 -0.1 605,555 - MMP_RS03210 0.30 -0.6 605,601 - MMP_RS03210 0.32 -0.0 605,749 - MMP_RS03210 0.40 +0.2 605,822 - MMP_RS03210 0.44 -3.7 605,823 + MMP_RS03210 0.44 -0.2 605,823 + MMP_RS03210 0.44 -1.3 605,823 + MMP_RS03210 0.44 -3.1
Or see this region's nucleotide sequence