Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03140 and MMP_RS03145 are separated by 17 nucleotides MMP_RS03145 and MMP_RS03150 are separated by 156 nucleotides
MMP_RS03140: MMP_RS03140 - hypothetical protein, at 591,868 to 593,298
_RS03140
MMP_RS03145: MMP_RS03145 - fibrillarin-like rRNA/tRNA 2'-O-methyltransferase, at 593,316 to 594,008
_RS03145
MMP_RS03150: MMP_RS03150 - phosphoglycerate mutase, at 594,165 to 595,451
_RS03150
Position (kb) 593
594
595 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 592.338 kb on + strand, within MMP_RS03140 at 592.339 kb on - strand, within MMP_RS03140 at 592.340 kb on + strand, within MMP_RS03140 at 592.377 kb on - strand, within MMP_RS03140 at 592.381 kb on - strand, within MMP_RS03140 at 592.382 kb on + strand, within MMP_RS03140 at 592.420 kb on - strand, within MMP_RS03140 at 592.423 kb on + strand, within MMP_RS03140 at 592.554 kb on + strand, within MMP_RS03140 at 592.564 kb on - strand, within MMP_RS03140 at 592.565 kb on + strand, within MMP_RS03140 at 592.571 kb on + strand, within MMP_RS03140 at 592.667 kb on - strand, within MMP_RS03140 at 592.757 kb on - strand, within MMP_RS03140 at 593.313 kb on - strand at 593.313 kb on - strand at 593.354 kb on + strand at 593.354 kb on + strand at 593.354 kb on + strand at 593.455 kb on - strand, within MMP_RS03145 at 593.455 kb on - strand, within MMP_RS03145 at 593.462 kb on - strand, within MMP_RS03145 at 593.504 kb on - strand, within MMP_RS03145 at 593.507 kb on + strand, within MMP_RS03145 at 593.554 kb on + strand, within MMP_RS03145 at 593.597 kb on - strand, within MMP_RS03145 at 594.006 kb on - strand at 594.007 kb on + strand at 594.016 kb on - strand at 594.016 kb on - strand at 594.017 kb on + strand at 594.023 kb on - strand at 594.059 kb on - strand at 594.068 kb on - strand at 594.069 kb on + strand at 594.069 kb on + strand at 594.071 kb on + strand at 594.091 kb on + strand at 594.103 kb on + strand at 594.121 kb on + strand at 594.135 kb on - strand at 594.144 kb on - strand at 594.148 kb on + strand at 594.327 kb on - strand, within MMP_RS03150 at 594.385 kb on - strand, within MMP_RS03150 at 594.438 kb on - strand, within MMP_RS03150 at 594.466 kb on - strand, within MMP_RS03150 at 594.477 kb on - strand, within MMP_RS03150 at 594.478 kb on + strand, within MMP_RS03150 at 594.494 kb on + strand, within MMP_RS03150 at 594.494 kb on + strand, within MMP_RS03150 at 594.498 kb on + strand, within MMP_RS03150 at 594.498 kb on + strand, within MMP_RS03150 at 594.687 kb on + strand, within MMP_RS03150 at 594.890 kb on - strand, within MMP_RS03150
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations remove 592,338 + MMP_RS03140 0.33 -5.2 592,339 - MMP_RS03140 0.33 -1.9 592,340 + MMP_RS03140 0.33 -3.1 592,377 - MMP_RS03140 0.36 -2.3 592,381 - MMP_RS03140 0.36 -3.7 592,382 + MMP_RS03140 0.36 -5.3 592,420 - MMP_RS03140 0.39 -6.7 592,423 + MMP_RS03140 0.39 -5.9 592,554 + MMP_RS03140 0.48 -5.3 592,564 - MMP_RS03140 0.49 -1.0 592,565 + MMP_RS03140 0.49 -4.4 592,571 + MMP_RS03140 0.49 -5.8 592,667 - MMP_RS03140 0.56 -2.5 592,757 - MMP_RS03140 0.62 -4.2 593,313 - -2.5 593,313 - -5.7 593,354 + -3.2 593,354 + -4.9 593,354 + -4.1 593,455 - MMP_RS03145 0.20 -3.1 593,455 - MMP_RS03145 0.20 -3.6 593,462 - MMP_RS03145 0.21 -2.4 593,504 - MMP_RS03145 0.27 -5.4 593,507 + MMP_RS03145 0.28 -4.2 593,554 + MMP_RS03145 0.34 -5.6 593,597 - MMP_RS03145 0.41 -5.5 594,006 - +2.0 594,007 + +1.0 594,016 - -0.7 594,016 - -0.6 594,017 + -0.1 594,023 - -0.6 594,059 - +0.9 594,068 - +1.7 594,069 + -0.6 594,069 + -0.1 594,071 + +1.5 594,091 + +1.4 594,103 + +0.2 594,121 + +0.8 594,135 - +1.6 594,144 - +1.3 594,148 + -0.5 594,327 - MMP_RS03150 0.13 +1.1 594,385 - MMP_RS03150 0.17 +0.2 594,438 - MMP_RS03150 0.21 +1.4 594,466 - MMP_RS03150 0.23 +0.6 594,477 - MMP_RS03150 0.24 +2.3 594,478 + MMP_RS03150 0.24 +1.2 594,494 + MMP_RS03150 0.26 +0.8 594,494 + MMP_RS03150 0.26 +2.2 594,498 + MMP_RS03150 0.26 +0.7 594,498 + MMP_RS03150 0.26 +1.6 594,687 + MMP_RS03150 0.41 +1.2 594,890 - MMP_RS03150 0.56 +0.9
Or see this region's nucleotide sequence