Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03145

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03140 and MMP_RS03145 are separated by 17 nucleotidesMMP_RS03145 and MMP_RS03150 are separated by 156 nucleotides MMP_RS03140: MMP_RS03140 - hypothetical protein, at 591,868 to 593,298 _RS03140 MMP_RS03145: MMP_RS03145 - fibrillarin-like rRNA/tRNA 2'-O-methyltransferase, at 593,316 to 594,008 _RS03145 MMP_RS03150: MMP_RS03150 - phosphoglycerate mutase, at 594,165 to 595,451 _RS03150 Position (kb) 593 594 595Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 592.338 kb on + strand, within MMP_RS03140at 592.339 kb on - strand, within MMP_RS03140at 592.340 kb on + strand, within MMP_RS03140at 592.377 kb on - strand, within MMP_RS03140at 592.381 kb on - strand, within MMP_RS03140at 592.382 kb on + strand, within MMP_RS03140at 592.420 kb on - strand, within MMP_RS03140at 592.423 kb on + strand, within MMP_RS03140at 592.554 kb on + strand, within MMP_RS03140at 592.564 kb on - strand, within MMP_RS03140at 592.565 kb on + strand, within MMP_RS03140at 592.571 kb on + strand, within MMP_RS03140at 592.667 kb on - strand, within MMP_RS03140at 592.757 kb on - strand, within MMP_RS03140at 593.313 kb on - strandat 593.313 kb on - strandat 593.354 kb on + strandat 593.354 kb on + strandat 593.354 kb on + strandat 593.455 kb on - strand, within MMP_RS03145at 593.455 kb on - strand, within MMP_RS03145at 593.462 kb on - strand, within MMP_RS03145at 593.504 kb on - strand, within MMP_RS03145at 593.507 kb on + strand, within MMP_RS03145at 593.554 kb on + strand, within MMP_RS03145at 593.597 kb on - strand, within MMP_RS03145at 594.006 kb on - strandat 594.007 kb on + strandat 594.016 kb on - strandat 594.016 kb on - strandat 594.017 kb on + strandat 594.023 kb on - strandat 594.059 kb on - strandat 594.068 kb on - strandat 594.069 kb on + strandat 594.069 kb on + strandat 594.071 kb on + strandat 594.091 kb on + strandat 594.103 kb on + strandat 594.121 kb on + strandat 594.135 kb on - strandat 594.144 kb on - strandat 594.148 kb on + strandat 594.327 kb on - strand, within MMP_RS03150at 594.385 kb on - strand, within MMP_RS03150at 594.438 kb on - strand, within MMP_RS03150at 594.466 kb on - strand, within MMP_RS03150at 594.477 kb on - strand, within MMP_RS03150at 594.478 kb on + strand, within MMP_RS03150at 594.494 kb on + strand, within MMP_RS03150at 594.494 kb on + strand, within MMP_RS03150at 594.498 kb on + strand, within MMP_RS03150at 594.498 kb on + strand, within MMP_RS03150at 594.687 kb on + strand, within MMP_RS03150at 594.890 kb on - strand, within MMP_RS03150

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
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592,338 + MMP_RS03140 0.33 -5.2
592,339 - MMP_RS03140 0.33 -1.9
592,340 + MMP_RS03140 0.33 -3.1
592,377 - MMP_RS03140 0.36 -2.3
592,381 - MMP_RS03140 0.36 -3.7
592,382 + MMP_RS03140 0.36 -5.3
592,420 - MMP_RS03140 0.39 -6.7
592,423 + MMP_RS03140 0.39 -5.9
592,554 + MMP_RS03140 0.48 -5.3
592,564 - MMP_RS03140 0.49 -1.0
592,565 + MMP_RS03140 0.49 -4.4
592,571 + MMP_RS03140 0.49 -5.8
592,667 - MMP_RS03140 0.56 -2.5
592,757 - MMP_RS03140 0.62 -4.2
593,313 - -2.5
593,313 - -5.7
593,354 + -3.2
593,354 + -4.9
593,354 + -4.1
593,455 - MMP_RS03145 0.20 -3.1
593,455 - MMP_RS03145 0.20 -3.6
593,462 - MMP_RS03145 0.21 -2.4
593,504 - MMP_RS03145 0.27 -5.4
593,507 + MMP_RS03145 0.28 -4.2
593,554 + MMP_RS03145 0.34 -5.6
593,597 - MMP_RS03145 0.41 -5.5
594,006 - +2.0
594,007 + +1.0
594,016 - -0.7
594,016 - -0.6
594,017 + -0.1
594,023 - -0.6
594,059 - +0.9
594,068 - +1.7
594,069 + -0.6
594,069 + -0.1
594,071 + +1.5
594,091 + +1.4
594,103 + +0.2
594,121 + +0.8
594,135 - +1.6
594,144 - +1.3
594,148 + -0.5
594,327 - MMP_RS03150 0.13 +1.1
594,385 - MMP_RS03150 0.17 +0.2
594,438 - MMP_RS03150 0.21 +1.4
594,466 - MMP_RS03150 0.23 +0.6
594,477 - MMP_RS03150 0.24 +2.3
594,478 + MMP_RS03150 0.24 +1.2
594,494 + MMP_RS03150 0.26 +0.8
594,494 + MMP_RS03150 0.26 +2.2
594,498 + MMP_RS03150 0.26 +0.7
594,498 + MMP_RS03150 0.26 +1.6
594,687 + MMP_RS03150 0.41 +1.2
594,890 - MMP_RS03150 0.56 +0.9

Or see this region's nucleotide sequence