Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02875

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02865 and MMP_RS02870 are separated by 125 nucleotidesMMP_RS02870 and MMP_RS02875 are separated by 33 nucleotidesMMP_RS02875 and MMP_RS02880 are separated by 14 nucleotides MMP_RS02865: MMP_RS02865 - phosphoserine phosphatase SerB, at 545,781 to 546,422 _RS02865 MMP_RS02870: MMP_RS02870 - hypothetical protein, at 546,548 to 547,150 _RS02870 MMP_RS02875: MMP_RS02875 - chorismate pyruvate-lyase family protein, at 547,184 to 547,699 _RS02875 MMP_RS02880: MMP_RS02880 - AmmeMemoRadiSam system radical SAM enzyme, at 547,714 to 548,724 _RS02880 Position (kb) 547 548Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 546.306 kb on + strandat 546.498 kb on + strandat 546.503 kb on + strandat 546.521 kb on + strandat 546.521 kb on + strandat 546.589 kb on - strandat 546.590 kb on + strandat 546.690 kb on - strand, within MMP_RS02870at 546.690 kb on - strand, within MMP_RS02870at 546.690 kb on - strand, within MMP_RS02870at 546.697 kb on + strand, within MMP_RS02870at 546.784 kb on - strand, within MMP_RS02870at 546.792 kb on + strand, within MMP_RS02870at 546.865 kb on - strand, within MMP_RS02870at 547.066 kb on + strand, within MMP_RS02870at 547.074 kb on - strand, within MMP_RS02870at 547.075 kb on + strand, within MMP_RS02870at 547.095 kb on - strandat 547.107 kb on - strandat 547.123 kb on + strandat 547.123 kb on + strandat 547.161 kb on + strandat 547.173 kb on - strandat 547.183 kb on - strandat 547.192 kb on - strandat 547.236 kb on - strand, within MMP_RS02875at 547.285 kb on - strand, within MMP_RS02875at 547.289 kb on + strand, within MMP_RS02875at 547.299 kb on - strand, within MMP_RS02875at 547.341 kb on + strand, within MMP_RS02875at 547.363 kb on + strand, within MMP_RS02875at 547.367 kb on - strand, within MMP_RS02875at 547.441 kb on + strand, within MMP_RS02875at 547.454 kb on + strand, within MMP_RS02875at 547.583 kb on + strand, within MMP_RS02875at 547.628 kb on - strand, within MMP_RS02875at 547.634 kb on + strand, within MMP_RS02875at 547.634 kb on + strand, within MMP_RS02875at 547.634 kb on + strand, within MMP_RS02875at 547.635 kb on - strand, within MMP_RS02875at 547.665 kb on - strandat 547.679 kb on + strandat 547.856 kb on - strand, within MMP_RS02880at 547.920 kb on - strand, within MMP_RS02880at 548.098 kb on - strand, within MMP_RS02880at 548.099 kb on + strand, within MMP_RS02880at 548.245 kb on + strand, within MMP_RS02880at 548.246 kb on - strand, within MMP_RS02880at 548.471 kb on + strand, within MMP_RS02880at 548.501 kb on - strand, within MMP_RS02880at 548.501 kb on - strand, within MMP_RS02880at 548.501 kb on - strand, within MMP_RS02880at 548.502 kb on + strand, within MMP_RS02880at 548.555 kb on - strand, within MMP_RS02880at 548.556 kb on + strand, within MMP_RS02880at 548.556 kb on + strand, within MMP_RS02880at 548.558 kb on + strand, within MMP_RS02880at 548.596 kb on - strand, within MMP_RS02880at 548.617 kb on + strand, within MMP_RS02880at 548.665 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
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546,306 + -4.2
546,498 + -0.3
546,503 + -0.6
546,521 + +1.0
546,521 + +0.2
546,589 - -2.4
546,590 + +0.5
546,690 - MMP_RS02870 0.24 -2.5
546,690 - MMP_RS02870 0.24 -3.5
546,690 - MMP_RS02870 0.24 -4.1
546,697 + MMP_RS02870 0.25 -3.1
546,784 - MMP_RS02870 0.39 -5.9
546,792 + MMP_RS02870 0.40 -0.9
546,865 - MMP_RS02870 0.53 -3.7
547,066 + MMP_RS02870 0.86 -4.2
547,074 - MMP_RS02870 0.87 -2.3
547,075 + MMP_RS02870 0.87 -2.6
547,095 - -2.8
547,107 - -6.0
547,123 + -5.6
547,123 + -6.2
547,161 + -6.5
547,173 - -4.3
547,183 - -5.7
547,192 - -3.8
547,236 - MMP_RS02875 0.10 -5.0
547,285 - MMP_RS02875 0.20 -4.4
547,289 + MMP_RS02875 0.20 -5.9
547,299 - MMP_RS02875 0.22 -1.6
547,341 + MMP_RS02875 0.30 -5.0
547,363 + MMP_RS02875 0.35 -5.5
547,367 - MMP_RS02875 0.35 -5.1
547,441 + MMP_RS02875 0.50 -5.3
547,454 + MMP_RS02875 0.52 -6.0
547,583 + MMP_RS02875 0.77 -5.9
547,628 - MMP_RS02875 0.86 -5.6
547,634 + MMP_RS02875 0.87 -5.8
547,634 + MMP_RS02875 0.87 -1.8
547,634 + MMP_RS02875 0.87 -6.5
547,635 - MMP_RS02875 0.87 -5.3
547,665 - -5.8
547,679 + -6.1
547,856 - MMP_RS02880 0.14 -1.4
547,920 - MMP_RS02880 0.20 -1.0
548,098 - MMP_RS02880 0.38 -0.5
548,099 + MMP_RS02880 0.38 +0.9
548,245 + MMP_RS02880 0.53 -0.3
548,246 - MMP_RS02880 0.53 -1.7
548,471 + MMP_RS02880 0.75 -0.4
548,501 - MMP_RS02880 0.78 -3.1
548,501 - MMP_RS02880 0.78 -5.0
548,501 - MMP_RS02880 0.78 -1.1
548,502 + MMP_RS02880 0.78 -0.2
548,555 - MMP_RS02880 0.83 -6.1
548,556 + MMP_RS02880 0.83 +0.7
548,556 + MMP_RS02880 0.83 -0.8
548,558 + MMP_RS02880 0.83 +0.1
548,596 - MMP_RS02880 0.87 -2.7
548,617 + MMP_RS02880 0.89 +0.2
548,665 + +0.4

Or see this region's nucleotide sequence