Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02120

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02115 and MMP_RS02120 are separated by 201 nucleotidesMMP_RS02120 and MMP_RS02125 are separated by 41 nucleotidesMMP_RS02125 and MMP_RS02130 are separated by 10 nucleotides MMP_RS02115: MMP_RS02115 - phosphopyruvate hydratase, at 393,105 to 394,397 _RS02115 MMP_RS02120: MMP_RS02120 - alanine--tRNA ligase, at 394,599 to 397,277 _RS02120 MMP_RS02125: MMP_RS02125 - pantoate kinase, at 397,319 to 398,191 _RS02125 MMP_RS02130: MMP_RS02130 - zinc metalloprotease HtpX, at 398,202 to 399,059 _RS02130 Position (kb) 394 395 396 397 398Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 393.926 kb on + strandat 393.937 kb on + strandat 394.320 kb on - strandat 394.401 kb on - strandat 394.406 kb on + strandat 394.443 kb on - strandat 394.453 kb on + strandat 394.479 kb on + strandat 394.491 kb on - strandat 394.577 kb on + strandat 394.620 kb on + strandat 394.779 kb on - strandat 394.780 kb on + strandat 395.033 kb on - strandat 395.669 kb on - strandat 395.788 kb on + strandat 395.790 kb on + strandat 395.914 kb on + strandat 397.131 kb on + strandat 397.309 kb on + strandat 397.336 kb on - strandat 397.361 kb on + strandat 397.870 kb on - strandat 397.871 kb on + strandat 397.872 kb on - strandat 397.873 kb on + strandat 397.900 kb on + strandat 397.998 kb on - strandat 397.998 kb on - strandat 398.136 kb on - strandat 398.190 kb on + strandat 398.211 kb on + strandat 398.268 kb on - strandat 398.269 kb on + strandat 398.271 kb on + strandat 398.271 kb on + strandat 398.271 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
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393,926 + -1.7
393,937 + -2.8
394,320 - -3.3
394,401 - -0.2
394,406 + -0.0
394,443 - -0.2
394,453 + -0.1
394,479 + -0.7
394,491 - +0.7
394,577 + -2.7
394,620 + -2.1
394,779 - -3.7
394,780 + -3.3
395,033 - -3.7
395,669 - -1.4
395,788 + -2.3
395,790 + -1.6
395,914 + -1.9
397,131 + -2.5
397,309 + -4.5
397,336 - -2.8
397,361 + -3.7
397,870 - -3.2
397,871 + -2.8
397,872 - -3.7
397,873 + -4.6
397,900 + -3.4
397,998 - -3.2
397,998 - -3.9
398,136 - -3.3
398,190 + -3.5
398,211 + -0.7
398,268 - -2.4
398,269 + -3.4
398,271 + -1.1
398,271 + +0.2
398,271 + -1.2

Or see this region's nucleotide sequence