Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01975

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01970 and MMP_RS01975 are separated by 44 nucleotidesMMP_RS01975 and MMP_RS01980 are separated by 133 nucleotidesMMP_RS01980 and MMP_RS01985 are separated by 79 nucleotides MMP_RS01970: MMP_RS01970 - TIGR04279 domain-containing protein, at 364,974 to 366,938 _RS01970 MMP_RS01975: MMP_RS01975 - hypothetical protein, at 366,983 to 368,389 _RS01975 MMP_RS01980: MMP_RS01980 - trimeric intracellular cation channel family protein, at 368,523 to 369,152 _RS01980 MMP_RS01985: MMP_RS01985 - F420-dependent methylenetetrahydromethanopterin dehydrogenase, at 369,232 to 370,065 _RS01985 Position (kb) 366 367 368 369Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2 3at 366.060 kb on + strand, within MMP_RS01970at 366.063 kb on + strand, within MMP_RS01970at 366.063 kb on + strand, within MMP_RS01970at 366.079 kb on + strand, within MMP_RS01970at 366.106 kb on - strand, within MMP_RS01970at 366.134 kb on - strand, within MMP_RS01970at 366.142 kb on - strand, within MMP_RS01970at 366.143 kb on + strand, within MMP_RS01970at 366.487 kb on + strand, within MMP_RS01970at 366.515 kb on - strand, within MMP_RS01970at 366.578 kb on + strand, within MMP_RS01970at 366.578 kb on + strand, within MMP_RS01970at 366.578 kb on + strand, within MMP_RS01970at 366.578 kb on + strand, within MMP_RS01970at 366.634 kb on - strand, within MMP_RS01970at 366.634 kb on - strand, within MMP_RS01970at 366.634 kb on - strand, within MMP_RS01970at 366.634 kb on - strand, within MMP_RS01970at 366.634 kb on - strand, within MMP_RS01970at 366.634 kb on - strand, within MMP_RS01970at 366.635 kb on + strand, within MMP_RS01970at 366.635 kb on + strand, within MMP_RS01970at 366.635 kb on + strand, within MMP_RS01970at 366.635 kb on + strand, within MMP_RS01970at 366.635 kb on + strand, within MMP_RS01970at 366.635 kb on + strand, within MMP_RS01970at 366.639 kb on + strand, within MMP_RS01970at 366.703 kb on - strand, within MMP_RS01970at 366.704 kb on + strand, within MMP_RS01970at 366.752 kb on + strandat 366.787 kb on - strandat 366.803 kb on + strandat 366.874 kb on - strandat 366.887 kb on + strandat 366.948 kb on - strandat 366.962 kb on - strandat 367.164 kb on - strand, within MMP_RS01975at 367.191 kb on - strand, within MMP_RS01975at 367.191 kb on - strand, within MMP_RS01975at 367.193 kb on - strand, within MMP_RS01975at 367.194 kb on + strand, within MMP_RS01975at 367.263 kb on - strand, within MMP_RS01975at 367.264 kb on + strand, within MMP_RS01975at 367.264 kb on + strand, within MMP_RS01975at 367.264 kb on + strand, within MMP_RS01975at 367.312 kb on - strand, within MMP_RS01975at 367.358 kb on - strand, within MMP_RS01975at 367.405 kb on - strand, within MMP_RS01975at 367.406 kb on + strand, within MMP_RS01975at 367.469 kb on - strand, within MMP_RS01975at 367.510 kb on + strand, within MMP_RS01975at 367.536 kb on - strand, within MMP_RS01975at 367.550 kb on + strand, within MMP_RS01975at 367.586 kb on + strand, within MMP_RS01975at 367.603 kb on - strand, within MMP_RS01975at 367.615 kb on - strand, within MMP_RS01975at 367.621 kb on + strand, within MMP_RS01975at 367.681 kb on + strand, within MMP_RS01975at 367.701 kb on + strand, within MMP_RS01975at 367.716 kb on + strand, within MMP_RS01975at 367.719 kb on - strand, within MMP_RS01975at 367.719 kb on - strand, within MMP_RS01975at 367.720 kb on + strand, within MMP_RS01975at 367.757 kb on - strand, within MMP_RS01975at 367.758 kb on + strand, within MMP_RS01975at 367.775 kb on - strand, within MMP_RS01975at 367.779 kb on - strand, within MMP_RS01975at 367.779 kb on - strand, within MMP_RS01975at 367.779 kb on - strand, within MMP_RS01975at 367.872 kb on - strand, within MMP_RS01975at 367.909 kb on - strand, within MMP_RS01975at 367.951 kb on - strand, within MMP_RS01975at 367.954 kb on + strand, within MMP_RS01975at 367.993 kb on + strand, within MMP_RS01975at 368.023 kb on + strand, within MMP_RS01975at 368.045 kb on + strand, within MMP_RS01975at 368.056 kb on - strand, within MMP_RS01975at 368.099 kb on - strand, within MMP_RS01975at 368.099 kb on - strand, within MMP_RS01975at 368.099 kb on - strand, within MMP_RS01975at 368.100 kb on + strand, within MMP_RS01975at 368.100 kb on + strand, within MMP_RS01975at 368.104 kb on + strand, within MMP_RS01975at 368.106 kb on - strand, within MMP_RS01975at 368.106 kb on - strand, within MMP_RS01975at 368.107 kb on + strand, within MMP_RS01975at 368.107 kb on + strand, within MMP_RS01975at 368.107 kb on + strand, within MMP_RS01975at 368.128 kb on - strand, within MMP_RS01975at 368.131 kb on - strand, within MMP_RS01975at 368.131 kb on - strand, within MMP_RS01975at 368.225 kb on - strand, within MMP_RS01975at 368.225 kb on - strand, within MMP_RS01975at 368.273 kb on - strandat 368.320 kb on + strandat 368.327 kb on + strandat 368.331 kb on - strandat 368.331 kb on - strandat 368.354 kb on + strandat 368.365 kb on + strandat 368.374 kb on + strandat 368.380 kb on - strandat 368.399 kb on - strandat 368.448 kb on - strandat 368.470 kb on + strandat 368.471 kb on - strandat 368.473 kb on - strandat 368.474 kb on + strandat 368.493 kb on - strandat 368.494 kb on + strandat 368.494 kb on + strandat 368.497 kb on - strandat 368.497 kb on - strandat 368.528 kb on - strandat 368.604 kb on + strand, within MMP_RS01980at 368.615 kb on + strand, within MMP_RS01980at 368.646 kb on + strand, within MMP_RS01980at 368.691 kb on + strand, within MMP_RS01980at 368.707 kb on - strand, within MMP_RS01980at 368.788 kb on - strand, within MMP_RS01980at 368.788 kb on - strand, within MMP_RS01980at 368.788 kb on - strand, within MMP_RS01980at 368.789 kb on + strand, within MMP_RS01980at 368.789 kb on + strand, within MMP_RS01980at 368.799 kb on - strand, within MMP_RS01980at 368.799 kb on - strand, within MMP_RS01980at 368.807 kb on + strand, within MMP_RS01980at 368.865 kb on - strand, within MMP_RS01980at 368.866 kb on + strand, within MMP_RS01980at 368.867 kb on - strand, within MMP_RS01980at 368.868 kb on + strand, within MMP_RS01980at 368.894 kb on + strand, within MMP_RS01980at 368.898 kb on + strand, within MMP_RS01980at 368.935 kb on - strand, within MMP_RS01980at 368.936 kb on + strand, within MMP_RS01980at 368.936 kb on + strand, within MMP_RS01980at 368.936 kb on + strand, within MMP_RS01980at 368.944 kb on - strand, within MMP_RS01980at 368.950 kb on - strand, within MMP_RS01980at 368.986 kb on + strand, within MMP_RS01980at 369.022 kb on + strand, within MMP_RS01980at 369.157 kb on - strandat 369.212 kb on - strandat 369.256 kb on + strandat 369.361 kb on - strand, within MMP_RS01985

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
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366,060 + MMP_RS01970 0.55 -6.5
366,063 + MMP_RS01970 0.55 -6.4
366,063 + MMP_RS01970 0.55 -3.4
366,079 + MMP_RS01970 0.56 -2.0
366,106 - MMP_RS01970 0.58 -4.9
366,134 - MMP_RS01970 0.59 -5.2
366,142 - MMP_RS01970 0.59 -4.6
366,143 + MMP_RS01970 0.59 -5.3
366,487 + MMP_RS01970 0.77 -5.5
366,515 - MMP_RS01970 0.78 -4.6
366,578 + MMP_RS01970 0.82 -4.8
366,578 + MMP_RS01970 0.82 -5.4
366,578 + MMP_RS01970 0.82 -6.2
366,578 + MMP_RS01970 0.82 -4.0
366,634 - MMP_RS01970 0.84 -5.4
366,634 - MMP_RS01970 0.84 -4.6
366,634 - MMP_RS01970 0.84 -5.1
366,634 - MMP_RS01970 0.84 -4.6
366,634 - MMP_RS01970 0.84 -5.3
366,634 - MMP_RS01970 0.84 -4.6
366,635 + MMP_RS01970 0.85 -5.1
366,635 + MMP_RS01970 0.85 -5.2
366,635 + MMP_RS01970 0.85 -5.8
366,635 + MMP_RS01970 0.85 -5.9
366,635 + MMP_RS01970 0.85 -5.9
366,635 + MMP_RS01970 0.85 -6.0
366,639 + MMP_RS01970 0.85 -5.5
366,703 - MMP_RS01970 0.88 -3.7
366,704 + MMP_RS01970 0.88 -5.6
366,752 + -5.0
366,787 - -7.0
366,803 + -4.4
366,874 - -5.0
366,887 + -3.2
366,948 - -7.0
366,962 - -4.0
367,164 - MMP_RS01975 0.13 -7.3
367,191 - MMP_RS01975 0.15 -3.8
367,191 - MMP_RS01975 0.15 -4.3
367,193 - MMP_RS01975 0.15 -4.9
367,194 + MMP_RS01975 0.15 -5.2
367,263 - MMP_RS01975 0.20 -4.9
367,264 + MMP_RS01975 0.20 -6.9
367,264 + MMP_RS01975 0.20 -5.5
367,264 + MMP_RS01975 0.20 -5.6
367,312 - MMP_RS01975 0.23 -4.8
367,358 - MMP_RS01975 0.27 -3.4
367,405 - MMP_RS01975 0.30 -5.7
367,406 + MMP_RS01975 0.30 -4.0
367,469 - MMP_RS01975 0.35 -6.5
367,510 + MMP_RS01975 0.37 -4.8
367,536 - MMP_RS01975 0.39 -6.3
367,550 + MMP_RS01975 0.40 -6.2
367,586 + MMP_RS01975 0.43 -5.1
367,603 - MMP_RS01975 0.44 -6.1
367,615 - MMP_RS01975 0.45 -6.8
367,621 + MMP_RS01975 0.45 -4.8
367,681 + MMP_RS01975 0.50 -5.2
367,701 + MMP_RS01975 0.51 -5.0
367,716 + MMP_RS01975 0.52 -7.1
367,719 - MMP_RS01975 0.52 -5.8
367,719 - MMP_RS01975 0.52 -5.7
367,720 + MMP_RS01975 0.52 -5.3
367,757 - MMP_RS01975 0.55 -6.0
367,758 + MMP_RS01975 0.55 -5.7
367,775 - MMP_RS01975 0.56 -5.8
367,779 - MMP_RS01975 0.57 -5.3
367,779 - MMP_RS01975 0.57 -5.8
367,779 - MMP_RS01975 0.57 -5.9
367,872 - MMP_RS01975 0.63 -5.8
367,909 - MMP_RS01975 0.66 -3.9
367,951 - MMP_RS01975 0.69 -6.2
367,954 + MMP_RS01975 0.69 -5.5
367,993 + MMP_RS01975 0.72 -3.6
368,023 + MMP_RS01975 0.74 -5.1
368,045 + MMP_RS01975 0.75 -4.8
368,056 - MMP_RS01975 0.76 -5.6
368,099 - MMP_RS01975 0.79 -7.6
368,099 - MMP_RS01975 0.79 -5.7
368,099 - MMP_RS01975 0.79 -6.4
368,100 + MMP_RS01975 0.79 -6.7
368,100 + MMP_RS01975 0.79 -5.5
368,104 + MMP_RS01975 0.80 -5.5
368,106 - MMP_RS01975 0.80 -4.1
368,106 - MMP_RS01975 0.80 -5.3
368,107 + MMP_RS01975 0.80 -5.7
368,107 + MMP_RS01975 0.80 -6.2
368,107 + MMP_RS01975 0.80 -3.5
368,128 - MMP_RS01975 0.81 -4.9
368,131 - MMP_RS01975 0.82 -6.3
368,131 - MMP_RS01975 0.82 -4.5
368,225 - MMP_RS01975 0.88 -3.9
368,225 - MMP_RS01975 0.88 -6.1
368,273 - -6.0
368,320 + -0.8
368,327 + -5.6
368,331 - -4.7
368,331 - -5.9
368,354 + -5.7
368,365 + +0.5
368,374 + +0.6
368,380 - +0.9
368,399 - +0.8
368,448 - +0.7
368,470 + +0.8
368,471 - -1.2
368,473 - +1.1
368,474 + +0.9
368,493 - +0.9
368,494 + -0.1
368,494 + +1.1
368,497 - -1.2
368,497 - +1.6
368,528 - +0.9
368,604 + MMP_RS01980 0.13 +0.7
368,615 + MMP_RS01980 0.15 +0.6
368,646 + MMP_RS01980 0.20 +0.5
368,691 + MMP_RS01980 0.27 +0.5
368,707 - MMP_RS01980 0.29 -0.3
368,788 - MMP_RS01980 0.42 +3.0
368,788 - MMP_RS01980 0.42 +0.6
368,788 - MMP_RS01980 0.42 +1.5
368,789 + MMP_RS01980 0.42 +0.2
368,789 + MMP_RS01980 0.42 +0.2
368,799 - MMP_RS01980 0.44 +0.2
368,799 - MMP_RS01980 0.44 +0.4
368,807 + MMP_RS01980 0.45 +1.9
368,865 - MMP_RS01980 0.54 +0.7
368,866 + MMP_RS01980 0.54 +1.5
368,867 - MMP_RS01980 0.55 -4.1
368,868 + MMP_RS01980 0.55 +0.1
368,894 + MMP_RS01980 0.59 +1.4
368,898 + MMP_RS01980 0.60 +1.4
368,935 - MMP_RS01980 0.65 +1.4
368,936 + MMP_RS01980 0.66 +2.1
368,936 + MMP_RS01980 0.66 +0.9
368,936 + MMP_RS01980 0.66 +0.3
368,944 - MMP_RS01980 0.67 +2.8
368,950 - MMP_RS01980 0.68 -0.2
368,986 + MMP_RS01980 0.73 +0.3
369,022 + MMP_RS01980 0.79 -0.2
369,157 - -0.2
369,212 - -5.2
369,256 + -5.6
369,361 - MMP_RS01985 0.15 -6.6

Or see this region's nucleotide sequence