Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01970

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01955 and MMP_RS01960 are separated by 12 nucleotidesMMP_RS01960 and MMP_RS01965 are separated by 18 nucleotidesMMP_RS01965 and MMP_RS01970 are separated by 268 nucleotidesMMP_RS01970 and MMP_RS01975 are separated by 44 nucleotides MMP_RS01955: MMP_RS01955 - hypothetical protein, at 363,496 to 364,086 _RS01955 MMP_RS01960: MMP_RS01960 - hypothetical protein, at 364,099 to 364,338 _RS01960 MMP_RS01965: MMP_RS01965 - DUF1616 domain-containing protein, at 364,357 to 364,705 _RS01965 MMP_RS01970: MMP_RS01970 - TIGR04279 domain-containing protein, at 364,974 to 366,938 _RS01970 MMP_RS01975: MMP_RS01975 - hypothetical protein, at 366,983 to 368,389 _RS01975 Position (kb) 364 365 366 367Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2at 364.269 kb on - strand, within MMP_RS01960at 364.276 kb on - strand, within MMP_RS01960at 364.321 kb on - strandat 364.321 kb on - strandat 364.322 kb on + strandat 364.324 kb on + strandat 364.324 kb on + strandat 364.326 kb on - strandat 364.466 kb on + strand, within MMP_RS01965at 364.481 kb on + strand, within MMP_RS01965at 364.555 kb on + strand, within MMP_RS01965at 364.566 kb on - strand, within MMP_RS01965at 364.589 kb on + strand, within MMP_RS01965at 364.628 kb on + strand, within MMP_RS01965at 364.676 kb on - strandat 364.838 kb on - strandat 364.838 kb on - strandat 364.839 kb on + strandat 364.843 kb on - strandat 364.898 kb on + strandat 364.899 kb on - strandat 364.900 kb on + strandat 364.905 kb on - strandat 364.906 kb on + strandat 364.908 kb on + strandat 364.916 kb on - strandat 364.917 kb on + strandat 364.917 kb on + strandat 364.917 kb on + strandat 364.917 kb on + strandat 364.918 kb on - strandat 364.918 kb on - strandat 364.918 kb on - strandat 364.918 kb on - strandat 364.918 kb on - strandat 364.918 kb on - strandat 364.919 kb on + strandat 364.919 kb on + strandat 364.919 kb on + strandat 364.919 kb on + strandat 364.919 kb on + strandat 364.922 kb on - strandat 364.923 kb on + strandat 364.931 kb on - strandat 364.949 kb on - strandat 364.949 kb on - strandat 364.949 kb on - strandat 364.949 kb on - strandat 364.958 kb on - strandat 364.971 kb on + strandat 365.012 kb on + strandat 365.023 kb on - strandat 365.023 kb on - strandat 365.024 kb on + strandat 365.027 kb on - strandat 365.194 kb on - strand, within MMP_RS01970at 365.274 kb on - strand, within MMP_RS01970at 365.421 kb on - strand, within MMP_RS01970at 365.460 kb on + strand, within MMP_RS01970at 365.580 kb on + strand, within MMP_RS01970at 365.583 kb on + strand, within MMP_RS01970at 365.665 kb on - strand, within MMP_RS01970at 365.817 kb on + strand, within MMP_RS01970at 365.864 kb on - strand, within MMP_RS01970at 365.913 kb on - strand, within MMP_RS01970at 365.913 kb on - strand, within MMP_RS01970at 365.913 kb on - strand, within MMP_RS01970at 365.917 kb on + strand, within MMP_RS01970at 365.919 kb on + strand, within MMP_RS01970at 365.919 kb on + strand, within MMP_RS01970at 365.931 kb on + strand, within MMP_RS01970at 365.936 kb on + strand, within MMP_RS01970at 365.945 kb on - strand, within MMP_RS01970at 365.976 kb on + strand, within MMP_RS01970at 366.060 kb on + strand, within MMP_RS01970at 366.063 kb on + strand, within MMP_RS01970at 366.063 kb on + strand, within MMP_RS01970at 366.079 kb on + strand, within MMP_RS01970at 366.106 kb on - strand, within MMP_RS01970at 366.134 kb on - strand, within MMP_RS01970at 366.142 kb on - strand, within MMP_RS01970at 366.143 kb on + strand, within MMP_RS01970at 366.487 kb on + strand, within MMP_RS01970at 366.515 kb on - strand, within MMP_RS01970at 366.578 kb on + strand, within MMP_RS01970at 366.578 kb on + strand, within MMP_RS01970at 366.578 kb on + strand, within MMP_RS01970at 366.578 kb on + strand, within MMP_RS01970at 366.634 kb on - strand, within MMP_RS01970at 366.634 kb on - strand, within MMP_RS01970at 366.634 kb on - strand, within MMP_RS01970at 366.634 kb on - strand, within MMP_RS01970at 366.634 kb on - strand, within MMP_RS01970at 366.634 kb on - strand, within MMP_RS01970at 366.635 kb on + strand, within MMP_RS01970at 366.635 kb on + strand, within MMP_RS01970at 366.635 kb on + strand, within MMP_RS01970at 366.635 kb on + strand, within MMP_RS01970at 366.635 kb on + strand, within MMP_RS01970at 366.635 kb on + strand, within MMP_RS01970at 366.639 kb on + strand, within MMP_RS01970at 366.703 kb on - strand, within MMP_RS01970at 366.704 kb on + strand, within MMP_RS01970at 366.752 kb on + strandat 366.787 kb on - strandat 366.803 kb on + strandat 366.874 kb on - strandat 366.887 kb on + strandat 366.948 kb on - strandat 366.962 kb on - strandat 367.164 kb on - strand, within MMP_RS01975at 367.191 kb on - strand, within MMP_RS01975at 367.191 kb on - strand, within MMP_RS01975at 367.193 kb on - strand, within MMP_RS01975at 367.194 kb on + strand, within MMP_RS01975at 367.263 kb on - strand, within MMP_RS01975at 367.264 kb on + strand, within MMP_RS01975at 367.264 kb on + strand, within MMP_RS01975at 367.264 kb on + strand, within MMP_RS01975at 367.312 kb on - strand, within MMP_RS01975at 367.358 kb on - strand, within MMP_RS01975at 367.405 kb on - strand, within MMP_RS01975at 367.406 kb on + strand, within MMP_RS01975at 367.469 kb on - strand, within MMP_RS01975at 367.510 kb on + strand, within MMP_RS01975at 367.536 kb on - strand, within MMP_RS01975at 367.550 kb on + strand, within MMP_RS01975at 367.586 kb on + strand, within MMP_RS01975at 367.603 kb on - strand, within MMP_RS01975at 367.615 kb on - strand, within MMP_RS01975at 367.621 kb on + strand, within MMP_RS01975at 367.681 kb on + strand, within MMP_RS01975at 367.701 kb on + strand, within MMP_RS01975at 367.716 kb on + strand, within MMP_RS01975at 367.719 kb on - strand, within MMP_RS01975at 367.719 kb on - strand, within MMP_RS01975at 367.720 kb on + strand, within MMP_RS01975at 367.757 kb on - strand, within MMP_RS01975at 367.758 kb on + strand, within MMP_RS01975at 367.775 kb on - strand, within MMP_RS01975at 367.779 kb on - strand, within MMP_RS01975at 367.779 kb on - strand, within MMP_RS01975at 367.779 kb on - strand, within MMP_RS01975at 367.872 kb on - strand, within MMP_RS01975at 367.909 kb on - strand, within MMP_RS01975

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
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364,269 - MMP_RS01960 0.71 -3.8
364,276 - MMP_RS01960 0.74 -1.6
364,321 - -1.1
364,321 - -0.3
364,322 + +1.4
364,324 + -4.8
364,324 + -3.8
364,326 - -4.0
364,466 + MMP_RS01965 0.31 +0.6
364,481 + MMP_RS01965 0.36 +0.5
364,555 + MMP_RS01965 0.57 +1.5
364,566 - MMP_RS01965 0.60 +1.3
364,589 + MMP_RS01965 0.66 -0.7
364,628 + MMP_RS01965 0.78 -3.9
364,676 - +2.5
364,838 - +1.3
364,838 - -1.0
364,839 + +1.0
364,843 - +1.5
364,898 + -5.9
364,899 - -6.2
364,900 + +1.1
364,905 - -4.5
364,906 + -5.7
364,908 + -0.7
364,916 - -4.5
364,917 + -5.1
364,917 + -2.7
364,917 + -5.2
364,917 + -1.6
364,918 - -6.3
364,918 - -7.2
364,918 - -5.8
364,918 - -5.2
364,918 - -5.5
364,918 - -3.7
364,919 + -5.4
364,919 + -5.6
364,919 + -5.5
364,919 + -5.1
364,919 + -6.1
364,922 - -4.6
364,923 + -6.2
364,931 - -5.2
364,949 - -5.2
364,949 - -6.0
364,949 - -7.0
364,949 - -4.1
364,958 - -4.9
364,971 + -4.8
365,012 + -5.3
365,023 - -4.3
365,023 - -5.2
365,024 + -4.7
365,027 - -5.6
365,194 - MMP_RS01970 0.11 -5.9
365,274 - MMP_RS01970 0.15 -4.9
365,421 - MMP_RS01970 0.23 -5.0
365,460 + MMP_RS01970 0.25 -6.2
365,580 + MMP_RS01970 0.31 -5.9
365,583 + MMP_RS01970 0.31 -4.2
365,665 - MMP_RS01970 0.35 -5.7
365,817 + MMP_RS01970 0.43 -4.1
365,864 - MMP_RS01970 0.45 -6.5
365,913 - MMP_RS01970 0.48 -6.2
365,913 - MMP_RS01970 0.48 -3.1
365,913 - MMP_RS01970 0.48 -5.1
365,917 + MMP_RS01970 0.48 -6.2
365,919 + MMP_RS01970 0.48 -4.1
365,919 + MMP_RS01970 0.48 -2.9
365,931 + MMP_RS01970 0.49 -6.0
365,936 + MMP_RS01970 0.49 -6.7
365,945 - MMP_RS01970 0.49 -2.7
365,976 + MMP_RS01970 0.51 -4.0
366,060 + MMP_RS01970 0.55 -6.5
366,063 + MMP_RS01970 0.55 -6.4
366,063 + MMP_RS01970 0.55 -3.4
366,079 + MMP_RS01970 0.56 -2.0
366,106 - MMP_RS01970 0.58 -4.9
366,134 - MMP_RS01970 0.59 -5.2
366,142 - MMP_RS01970 0.59 -4.6
366,143 + MMP_RS01970 0.59 -5.3
366,487 + MMP_RS01970 0.77 -5.5
366,515 - MMP_RS01970 0.78 -4.6
366,578 + MMP_RS01970 0.82 -4.8
366,578 + MMP_RS01970 0.82 -5.4
366,578 + MMP_RS01970 0.82 -6.2
366,578 + MMP_RS01970 0.82 -4.0
366,634 - MMP_RS01970 0.84 -5.4
366,634 - MMP_RS01970 0.84 -4.6
366,634 - MMP_RS01970 0.84 -5.1
366,634 - MMP_RS01970 0.84 -4.6
366,634 - MMP_RS01970 0.84 -5.3
366,634 - MMP_RS01970 0.84 -4.6
366,635 + MMP_RS01970 0.85 -5.1
366,635 + MMP_RS01970 0.85 -5.2
366,635 + MMP_RS01970 0.85 -5.8
366,635 + MMP_RS01970 0.85 -5.9
366,635 + MMP_RS01970 0.85 -5.9
366,635 + MMP_RS01970 0.85 -6.0
366,639 + MMP_RS01970 0.85 -5.5
366,703 - MMP_RS01970 0.88 -3.7
366,704 + MMP_RS01970 0.88 -5.6
366,752 + -5.0
366,787 - -7.0
366,803 + -4.4
366,874 - -5.0
366,887 + -3.2
366,948 - -7.0
366,962 - -4.0
367,164 - MMP_RS01975 0.13 -7.3
367,191 - MMP_RS01975 0.15 -3.8
367,191 - MMP_RS01975 0.15 -4.3
367,193 - MMP_RS01975 0.15 -4.9
367,194 + MMP_RS01975 0.15 -5.2
367,263 - MMP_RS01975 0.20 -4.9
367,264 + MMP_RS01975 0.20 -6.9
367,264 + MMP_RS01975 0.20 -5.5
367,264 + MMP_RS01975 0.20 -5.6
367,312 - MMP_RS01975 0.23 -4.8
367,358 - MMP_RS01975 0.27 -3.4
367,405 - MMP_RS01975 0.30 -5.7
367,406 + MMP_RS01975 0.30 -4.0
367,469 - MMP_RS01975 0.35 -6.5
367,510 + MMP_RS01975 0.37 -4.8
367,536 - MMP_RS01975 0.39 -6.3
367,550 + MMP_RS01975 0.40 -6.2
367,586 + MMP_RS01975 0.43 -5.1
367,603 - MMP_RS01975 0.44 -6.1
367,615 - MMP_RS01975 0.45 -6.8
367,621 + MMP_RS01975 0.45 -4.8
367,681 + MMP_RS01975 0.50 -5.2
367,701 + MMP_RS01975 0.51 -5.0
367,716 + MMP_RS01975 0.52 -7.1
367,719 - MMP_RS01975 0.52 -5.8
367,719 - MMP_RS01975 0.52 -5.7
367,720 + MMP_RS01975 0.52 -5.3
367,757 - MMP_RS01975 0.55 -6.0
367,758 + MMP_RS01975 0.55 -5.7
367,775 - MMP_RS01975 0.56 -5.8
367,779 - MMP_RS01975 0.57 -5.3
367,779 - MMP_RS01975 0.57 -5.8
367,779 - MMP_RS01975 0.57 -5.9
367,872 - MMP_RS01975 0.63 -5.8
367,909 - MMP_RS01975 0.66 -3.9

Or see this region's nucleotide sequence