Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01905 and MMP_RS01910 are separated by 6 nucleotides MMP_RS01910 and MMP_RS01915 are separated by 1 nucleotides
MMP_RS01905: MMP_RS01905 - glycosyltransferase, at 352,524 to 353,708
_RS01905
MMP_RS01910: MMP_RS01910 - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 353,715 to 354,788
_RS01910
MMP_RS01915: MMP_RS01915 - DUF354 domain-containing protein, at 354,790 to 355,911
_RS01915
Position (kb) 353
354
355 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 352.769 kb on - strand, within MMP_RS01905 at 352.871 kb on - strand, within MMP_RS01905 at 352.944 kb on - strand, within MMP_RS01905 at 352.948 kb on - strand, within MMP_RS01905 at 352.949 kb on + strand, within MMP_RS01905 at 353.022 kb on - strand, within MMP_RS01905 at 353.023 kb on + strand, within MMP_RS01905 at 353.029 kb on - strand, within MMP_RS01905 at 353.030 kb on + strand, within MMP_RS01905 at 353.043 kb on - strand, within MMP_RS01905 at 353.058 kb on + strand, within MMP_RS01905 at 353.085 kb on - strand, within MMP_RS01905 at 353.090 kb on - strand, within MMP_RS01905 at 353.094 kb on - strand, within MMP_RS01905 at 353.095 kb on + strand, within MMP_RS01905 at 353.095 kb on + strand, within MMP_RS01905 at 353.097 kb on + strand, within MMP_RS01905 at 353.118 kb on - strand, within MMP_RS01905 at 353.119 kb on + strand, within MMP_RS01905 at 353.128 kb on - strand, within MMP_RS01905 at 353.128 kb on - strand, within MMP_RS01905 at 353.141 kb on - strand, within MMP_RS01905 at 353.142 kb on + strand, within MMP_RS01905 at 353.144 kb on - strand, within MMP_RS01905 at 353.144 kb on - strand, within MMP_RS01905 at 353.144 kb on - strand, within MMP_RS01905 at 353.145 kb on + strand, within MMP_RS01905 at 353.150 kb on - strand, within MMP_RS01905 at 353.159 kb on - strand, within MMP_RS01905 at 353.160 kb on + strand, within MMP_RS01905 at 353.161 kb on - strand, within MMP_RS01905 at 353.189 kb on - strand, within MMP_RS01905 at 353.199 kb on + strand, within MMP_RS01905 at 353.202 kb on - strand, within MMP_RS01905 at 353.203 kb on + strand, within MMP_RS01905 at 353.203 kb on + strand, within MMP_RS01905 at 353.204 kb on - strand, within MMP_RS01905 at 353.204 kb on - strand, within MMP_RS01905 at 353.225 kb on - strand, within MMP_RS01905 at 353.225 kb on - strand, within MMP_RS01905 at 353.225 kb on - strand, within MMP_RS01905 at 353.225 kb on - strand, within MMP_RS01905 at 353.226 kb on + strand, within MMP_RS01905 at 353.226 kb on + strand, within MMP_RS01905 at 353.226 kb on + strand, within MMP_RS01905 at 353.226 kb on + strand, within MMP_RS01905 at 353.226 kb on + strand, within MMP_RS01905 at 353.255 kb on + strand, within MMP_RS01905 at 353.255 kb on + strand, within MMP_RS01905 at 353.265 kb on + strand, within MMP_RS01905 at 353.265 kb on + strand, within MMP_RS01905 at 353.286 kb on - strand, within MMP_RS01905 at 353.286 kb on - strand, within MMP_RS01905 at 353.293 kb on + strand, within MMP_RS01905 at 353.296 kb on + strand, within MMP_RS01905 at 353.296 kb on + strand, within MMP_RS01905 at 353.312 kb on + strand, within MMP_RS01905 at 353.339 kb on + strand, within MMP_RS01905 at 353.354 kb on - strand, within MMP_RS01905 at 353.355 kb on + strand, within MMP_RS01905 at 353.399 kb on - strand, within MMP_RS01905 at 353.401 kb on - strand, within MMP_RS01905 at 353.405 kb on - strand, within MMP_RS01905 at 353.405 kb on - strand, within MMP_RS01905 at 353.421 kb on - strand, within MMP_RS01905 at 353.422 kb on + strand, within MMP_RS01905 at 353.422 kb on + strand, within MMP_RS01905 at 353.464 kb on - strand, within MMP_RS01905 at 353.464 kb on - strand, within MMP_RS01905 at 353.465 kb on + strand, within MMP_RS01905 at 353.490 kb on - strand, within MMP_RS01905 at 353.490 kb on - strand, within MMP_RS01905 at 353.491 kb on + strand, within MMP_RS01905 at 353.504 kb on - strand, within MMP_RS01905 at 353.505 kb on + strand, within MMP_RS01905 at 353.510 kb on - strand, within MMP_RS01905 at 353.511 kb on + strand, within MMP_RS01905 at 353.573 kb on + strand, within MMP_RS01905 at 353.599 kb on - strand at 353.599 kb on - strand at 353.616 kb on - strand at 353.616 kb on - strand at 353.617 kb on + strand at 353.619 kb on + strand at 353.682 kb on - strand at 353.684 kb on - strand at 353.689 kb on + strand at 353.708 kb on - strand at 353.709 kb on + strand at 353.711 kb on - strand at 353.711 kb on - strand at 353.711 kb on - strand at 353.711 kb on - strand at 353.779 kb on - strand at 353.779 kb on - strand at 353.780 kb on + strand at 353.831 kb on - strand, within MMP_RS01910 at 353.847 kb on - strand, within MMP_RS01910 at 353.848 kb on + strand, within MMP_RS01910 at 353.849 kb on - strand, within MMP_RS01910 at 353.850 kb on + strand, within MMP_RS01910 at 353.850 kb on + strand, within MMP_RS01910 at 353.888 kb on - strand, within MMP_RS01910 at 353.972 kb on - strand, within MMP_RS01910 at 353.984 kb on + strand, within MMP_RS01910 at 353.994 kb on - strand, within MMP_RS01910 at 354.021 kb on - strand, within MMP_RS01910 at 354.027 kb on + strand, within MMP_RS01910 at 354.031 kb on - strand, within MMP_RS01910 at 354.059 kb on + strand, within MMP_RS01910 at 354.066 kb on - strand, within MMP_RS01910 at 354.123 kb on + strand, within MMP_RS01910 at 354.132 kb on - strand, within MMP_RS01910 at 354.135 kb on - strand, within MMP_RS01910 at 354.144 kb on - strand, within MMP_RS01910 at 354.155 kb on - strand, within MMP_RS01910 at 354.190 kb on + strand, within MMP_RS01910 at 354.194 kb on - strand, within MMP_RS01910 at 354.196 kb on - strand, within MMP_RS01910 at 354.197 kb on + strand, within MMP_RS01910 at 354.216 kb on - strand, within MMP_RS01910 at 354.234 kb on + strand, within MMP_RS01910 at 354.281 kb on + strand, within MMP_RS01910 at 354.281 kb on + strand, within MMP_RS01910 at 354.285 kb on - strand, within MMP_RS01910 at 354.285 kb on - strand, within MMP_RS01910 at 354.285 kb on - strand, within MMP_RS01910 at 354.285 kb on - strand, within MMP_RS01910 at 354.286 kb on + strand, within MMP_RS01910 at 354.286 kb on + strand, within MMP_RS01910 at 354.299 kb on - strand, within MMP_RS01910 at 354.335 kb on - strand, within MMP_RS01910 at 354.525 kb on - strand, within MMP_RS01910 at 354.609 kb on + strand, within MMP_RS01910 at 354.676 kb on - strand, within MMP_RS01910 at 354.778 kb on + strand at 354.780 kb on - strand at 354.780 kb on - strand at 354.804 kb on - strand at 354.809 kb on + strand at 354.889 kb on - strand at 354.926 kb on + strand, within MMP_RS01915 at 354.928 kb on - strand, within MMP_RS01915 at 354.928 kb on - strand, within MMP_RS01915 at 354.973 kb on - strand, within MMP_RS01915 at 355.024 kb on - strand, within MMP_RS01915 at 355.024 kb on - strand, within MMP_RS01915 at 355.051 kb on - strand, within MMP_RS01915 at 355.065 kb on - strand, within MMP_RS01915 at 355.091 kb on - strand, within MMP_RS01915 at 355.092 kb on + strand, within MMP_RS01915 at 355.092 kb on + strand, within MMP_RS01915 at 355.092 kb on + strand, within MMP_RS01915 at 355.096 kb on - strand, within MMP_RS01915 at 355.096 kb on - strand, within MMP_RS01915 at 355.111 kb on - strand, within MMP_RS01915 at 355.112 kb on + strand, within MMP_RS01915 at 355.112 kb on + strand, within MMP_RS01915 at 355.167 kb on + strand, within MMP_RS01915 at 355.169 kb on - strand, within MMP_RS01915 at 355.169 kb on - strand, within MMP_RS01915 at 355.169 kb on - strand, within MMP_RS01915 at 355.169 kb on - strand, within MMP_RS01915 at 355.169 kb on - strand, within MMP_RS01915 at 355.170 kb on + strand, within MMP_RS01915 at 355.170 kb on + strand, within MMP_RS01915 at 355.171 kb on - strand, within MMP_RS01915 at 355.171 kb on - strand, within MMP_RS01915 at 355.171 kb on - strand, within MMP_RS01915 at 355.171 kb on - strand, within MMP_RS01915 at 355.172 kb on + strand, within MMP_RS01915 at 355.174 kb on - strand, within MMP_RS01915 at 355.175 kb on + strand, within MMP_RS01915 at 355.175 kb on + strand, within MMP_RS01915 at 355.252 kb on + strand, within MMP_RS01915 at 355.390 kb on - strand, within MMP_RS01915 at 355.390 kb on - strand, within MMP_RS01915 at 355.393 kb on - strand, within MMP_RS01915 at 355.421 kb on - strand, within MMP_RS01915 at 355.422 kb on + strand, within MMP_RS01915 at 355.422 kb on + strand, within MMP_RS01915 at 355.422 kb on + strand, within MMP_RS01915 at 355.425 kb on + strand, within MMP_RS01915 at 355.435 kb on - strand, within MMP_RS01915 at 355.436 kb on + strand, within MMP_RS01915 at 355.440 kb on + strand, within MMP_RS01915 at 355.455 kb on + strand, within MMP_RS01915 at 355.635 kb on + strand, within MMP_RS01915 at 355.654 kb on - strand, within MMP_RS01915 at 355.656 kb on - strand, within MMP_RS01915 at 355.697 kb on + strand, within MMP_RS01915 at 355.708 kb on - strand, within MMP_RS01915 at 355.708 kb on - strand, within MMP_RS01915 at 355.709 kb on + strand, within MMP_RS01915 at 355.751 kb on - strand, within MMP_RS01915 at 355.751 kb on - strand, within MMP_RS01915 at 355.752 kb on + strand, within MMP_RS01915 at 355.753 kb on - strand, within MMP_RS01915 at 355.753 kb on - strand, within MMP_RS01915 at 355.753 kb on - strand, within MMP_RS01915 at 355.754 kb on + strand, within MMP_RS01915 at 355.754 kb on + strand, within MMP_RS01915 at 355.765 kb on - strand, within MMP_RS01915 at 355.772 kb on + strand, within MMP_RS01915 at 355.772 kb on + strand, within MMP_RS01915
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations remove 352,769 - MMP_RS01905 0.21 -1.8 352,871 - MMP_RS01905 0.29 -4.2 352,944 - MMP_RS01905 0.35 -4.2 352,948 - MMP_RS01905 0.36 -5.5 352,949 + MMP_RS01905 0.36 -3.9 353,022 - MMP_RS01905 0.42 -4.2 353,023 + MMP_RS01905 0.42 -5.1 353,029 - MMP_RS01905 0.43 -5.7 353,030 + MMP_RS01905 0.43 -5.4 353,043 - MMP_RS01905 0.44 -4.4 353,058 + MMP_RS01905 0.45 -3.0 353,085 - MMP_RS01905 0.47 -3.8 353,090 - MMP_RS01905 0.48 -3.4 353,094 - MMP_RS01905 0.48 -3.3 353,095 + MMP_RS01905 0.48 -3.0 353,095 + MMP_RS01905 0.48 -4.1 353,097 + MMP_RS01905 0.48 -3.1 353,118 - MMP_RS01905 0.50 -4.7 353,119 + MMP_RS01905 0.50 -4.9 353,128 - MMP_RS01905 0.51 -5.6 353,128 - MMP_RS01905 0.51 -3.1 353,141 - MMP_RS01905 0.52 -3.8 353,142 + MMP_RS01905 0.52 -4.6 353,144 - MMP_RS01905 0.52 -4.9 353,144 - MMP_RS01905 0.52 -3.3 353,144 - MMP_RS01905 0.52 -5.0 353,145 + MMP_RS01905 0.52 -4.9 353,150 - MMP_RS01905 0.53 -3.1 353,159 - MMP_RS01905 0.54 -4.8 353,160 + MMP_RS01905 0.54 -4.8 353,161 - MMP_RS01905 0.54 -4.4 353,189 - MMP_RS01905 0.56 -3.3 353,199 + MMP_RS01905 0.57 -4.2 353,202 - MMP_RS01905 0.57 -5.1 353,203 + MMP_RS01905 0.57 -4.6 353,203 + MMP_RS01905 0.57 -1.3 353,204 - MMP_RS01905 0.57 -5.0 353,204 - MMP_RS01905 0.57 -4.5 353,225 - MMP_RS01905 0.59 -5.3 353,225 - MMP_RS01905 0.59 -3.7 353,225 - MMP_RS01905 0.59 -2.4 353,225 - MMP_RS01905 0.59 -4.7 353,226 + MMP_RS01905 0.59 -3.8 353,226 + MMP_RS01905 0.59 -5.8 353,226 + MMP_RS01905 0.59 -4.7 353,226 + MMP_RS01905 0.59 -5.3 353,226 + MMP_RS01905 0.59 -3.7 353,255 + MMP_RS01905 0.62 -4.8 353,255 + MMP_RS01905 0.62 -4.8 353,265 + MMP_RS01905 0.63 -4.7 353,265 + MMP_RS01905 0.63 -1.3 353,286 - MMP_RS01905 0.64 -3.8 353,286 - MMP_RS01905 0.64 -2.9 353,293 + MMP_RS01905 0.65 -5.1 353,296 + MMP_RS01905 0.65 -5.1 353,296 + MMP_RS01905 0.65 -3.1 353,312 + MMP_RS01905 0.66 -3.3 353,339 + MMP_RS01905 0.69 -2.8 353,354 - MMP_RS01905 0.70 -3.9 353,355 + MMP_RS01905 0.70 -7.1 353,399 - MMP_RS01905 0.74 -4.5 353,401 - MMP_RS01905 0.74 -3.9 353,405 - MMP_RS01905 0.74 -4.3 353,405 - MMP_RS01905 0.74 -5.2 353,421 - MMP_RS01905 0.76 -5.3 353,422 + MMP_RS01905 0.76 -3.8 353,422 + MMP_RS01905 0.76 -3.0 353,464 - MMP_RS01905 0.79 -4.0 353,464 - MMP_RS01905 0.79 -3.0 353,465 + MMP_RS01905 0.79 -3.9 353,490 - MMP_RS01905 0.82 -4.1 353,490 - MMP_RS01905 0.82 -4.7 353,491 + MMP_RS01905 0.82 -1.8 353,504 - MMP_RS01905 0.83 -5.6 353,505 + MMP_RS01905 0.83 -6.2 353,510 - MMP_RS01905 0.83 -3.6 353,511 + MMP_RS01905 0.83 -6.2 353,573 + MMP_RS01905 0.89 -4.8 353,599 - -3.4 353,599 - +0.8 353,616 - -3.7 353,616 - -5.2 353,617 + -3.6 353,619 + -4.8 353,682 - -5.6 353,684 - -3.9 353,689 + -5.4 353,708 - -3.9 353,709 + -2.4 353,711 - -5.2 353,711 - -4.7 353,711 - -2.3 353,711 - -4.4 353,779 - -4.0 353,779 - -2.6 353,780 + -4.8 353,831 - MMP_RS01910 0.11 -2.2 353,847 - MMP_RS01910 0.12 -2.8 353,848 + MMP_RS01910 0.12 -5.5 353,849 - MMP_RS01910 0.12 -4.5 353,850 + MMP_RS01910 0.13 -4.2 353,850 + MMP_RS01910 0.13 -5.6 353,888 - MMP_RS01910 0.16 -2.9 353,972 - MMP_RS01910 0.24 -3.9 353,984 + MMP_RS01910 0.25 -5.7 353,994 - MMP_RS01910 0.26 -2.2 354,021 - MMP_RS01910 0.28 -4.9 354,027 + MMP_RS01910 0.29 -1.3 354,031 - MMP_RS01910 0.29 -4.7 354,059 + MMP_RS01910 0.32 -3.0 354,066 - MMP_RS01910 0.33 -4.2 354,123 + MMP_RS01910 0.38 -5.0 354,132 - MMP_RS01910 0.39 -4.6 354,135 - MMP_RS01910 0.39 -4.5 354,144 - MMP_RS01910 0.40 -5.9 354,155 - MMP_RS01910 0.41 -4.6 354,190 + MMP_RS01910 0.44 -4.7 354,194 - MMP_RS01910 0.45 -5.3 354,196 - MMP_RS01910 0.45 -5.1 354,197 + MMP_RS01910 0.45 -4.5 354,216 - MMP_RS01910 0.47 -5.1 354,234 + MMP_RS01910 0.48 -4.0 354,281 + MMP_RS01910 0.53 -4.0 354,281 + MMP_RS01910 0.53 -4.5 354,285 - MMP_RS01910 0.53 -4.6 354,285 - MMP_RS01910 0.53 -1.7 354,285 - MMP_RS01910 0.53 -5.0 354,285 - MMP_RS01910 0.53 -4.1 354,286 + MMP_RS01910 0.53 -3.0 354,286 + MMP_RS01910 0.53 -4.3 354,299 - MMP_RS01910 0.54 -2.1 354,335 - MMP_RS01910 0.58 -5.9 354,525 - MMP_RS01910 0.75 -4.5 354,609 + MMP_RS01910 0.83 -4.9 354,676 - MMP_RS01910 0.89 -5.4 354,778 + -4.3 354,780 - -4.3 354,780 - -5.2 354,804 - -6.5 354,809 + -5.0 354,889 - -3.2 354,926 + MMP_RS01915 0.12 -5.7 354,928 - MMP_RS01915 0.12 -4.9 354,928 - MMP_RS01915 0.12 -5.2 354,973 - MMP_RS01915 0.16 -3.3 355,024 - MMP_RS01915 0.21 -4.1 355,024 - MMP_RS01915 0.21 -4.3 355,051 - MMP_RS01915 0.23 -6.2 355,065 - MMP_RS01915 0.25 -2.5 355,091 - MMP_RS01915 0.27 -6.5 355,092 + MMP_RS01915 0.27 -3.9 355,092 + MMP_RS01915 0.27 -4.5 355,092 + MMP_RS01915 0.27 -6.6 355,096 - MMP_RS01915 0.27 -4.0 355,096 - MMP_RS01915 0.27 -3.2 355,111 - MMP_RS01915 0.29 -4.5 355,112 + MMP_RS01915 0.29 -4.4 355,112 + MMP_RS01915 0.29 -5.1 355,167 + MMP_RS01915 0.34 -2.8 355,169 - MMP_RS01915 0.34 -4.6 355,169 - MMP_RS01915 0.34 -1.1 355,169 - MMP_RS01915 0.34 -5.6 355,169 - MMP_RS01915 0.34 -3.9 355,169 - MMP_RS01915 0.34 -5.7 355,170 + MMP_RS01915 0.34 -5.6 355,170 + MMP_RS01915 0.34 -5.3 355,171 - MMP_RS01915 0.34 -4.2 355,171 - MMP_RS01915 0.34 -4.2 355,171 - MMP_RS01915 0.34 -4.5 355,171 - MMP_RS01915 0.34 -6.0 355,172 + MMP_RS01915 0.34 -5.2 355,174 - MMP_RS01915 0.34 -6.0 355,175 + MMP_RS01915 0.34 -3.2 355,175 + MMP_RS01915 0.34 -5.9 355,252 + MMP_RS01915 0.41 -4.6 355,390 - MMP_RS01915 0.53 -4.3 355,390 - MMP_RS01915 0.53 -2.2 355,393 - MMP_RS01915 0.54 -5.4 355,421 - MMP_RS01915 0.56 -6.0 355,422 + MMP_RS01915 0.56 -5.7 355,422 + MMP_RS01915 0.56 -3.5 355,422 + MMP_RS01915 0.56 -4.7 355,425 + MMP_RS01915 0.57 +0.8 355,435 - MMP_RS01915 0.57 -4.3 355,436 + MMP_RS01915 0.58 -5.3 355,440 + MMP_RS01915 0.58 -4.4 355,455 + MMP_RS01915 0.59 -0.0 355,635 + MMP_RS01915 0.75 -4.4 355,654 - MMP_RS01915 0.77 -5.5 355,656 - MMP_RS01915 0.77 -4.8 355,697 + MMP_RS01915 0.81 -4.5 355,708 - MMP_RS01915 0.82 -3.0 355,708 - MMP_RS01915 0.82 -5.0 355,709 + MMP_RS01915 0.82 -4.9 355,751 - MMP_RS01915 0.86 -4.9 355,751 - MMP_RS01915 0.86 -4.9 355,752 + MMP_RS01915 0.86 -3.8 355,753 - MMP_RS01915 0.86 -0.9 355,753 - MMP_RS01915 0.86 -1.2 355,753 - MMP_RS01915 0.86 -6.0 355,754 + MMP_RS01915 0.86 -5.3 355,754 + MMP_RS01915 0.86 -4.1 355,765 - MMP_RS01915 0.87 -5.7 355,772 + MMP_RS01915 0.88 -6.8 355,772 + MMP_RS01915 0.88 -4.3
Or see this region's nucleotide sequence