Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01890 and MMP_RS01895 are separated by 23 nucleotides MMP_RS01895 and MMP_RS01900 overlap by 20 nucleotides
MMP_RS01890: MMP_RS01890 - nucleotide sugar dehydrogenase, at 348,468 to 349,775
_RS01890
MMP_RS01895: MMP_RS01895 - flippase, at 349,799 to 351,034
_RS01895
MMP_RS01900: MMP_RS01900 - hypothetical protein, at 351,015 to 352,514
_RS01900
Position (kb)
349
350
351
352 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 348.971 kb on - strand, within MMP_RS01890 at 349.041 kb on - strand, within MMP_RS01890 at 349.268 kb on - strand, within MMP_RS01890 at 349.294 kb on - strand, within MMP_RS01890 at 349.370 kb on + strand, within MMP_RS01890 at 349.384 kb on - strand, within MMP_RS01890 at 349.586 kb on + strand, within MMP_RS01890 at 349.691 kb on + strand at 349.709 kb on - strand at 349.709 kb on - strand at 349.710 kb on + strand at 349.713 kb on + strand at 349.754 kb on - strand at 349.754 kb on - strand at 349.774 kb on + strand at 349.825 kb on - strand at 349.862 kb on + strand at 349.867 kb on - strand at 349.888 kb on + strand at 349.939 kb on + strand, within MMP_RS01895 at 350.028 kb on + strand, within MMP_RS01895 at 350.035 kb on - strand, within MMP_RS01895 at 350.035 kb on - strand, within MMP_RS01895 at 350.035 kb on - strand, within MMP_RS01895 at 350.036 kb on + strand, within MMP_RS01895 at 350.094 kb on - strand, within MMP_RS01895 at 350.132 kb on + strand, within MMP_RS01895 at 350.151 kb on + strand, within MMP_RS01895 at 350.233 kb on - strand, within MMP_RS01895 at 350.233 kb on - strand, within MMP_RS01895 at 350.233 kb on - strand, within MMP_RS01895 at 350.233 kb on - strand, within MMP_RS01895 at 350.234 kb on + strand, within MMP_RS01895 at 350.234 kb on + strand, within MMP_RS01895 at 350.236 kb on + strand, within MMP_RS01895 at 350.239 kb on - strand, within MMP_RS01895 at 350.239 kb on - strand, within MMP_RS01895 at 350.240 kb on + strand, within MMP_RS01895 at 350.240 kb on + strand, within MMP_RS01895 at 350.257 kb on + strand, within MMP_RS01895 at 350.261 kb on + strand, within MMP_RS01895 at 350.326 kb on - strand, within MMP_RS01895 at 350.327 kb on + strand, within MMP_RS01895 at 350.356 kb on - strand, within MMP_RS01895 at 350.360 kb on - strand, within MMP_RS01895 at 350.362 kb on - strand, within MMP_RS01895 at 350.362 kb on - strand, within MMP_RS01895 at 350.363 kb on + strand, within MMP_RS01895 at 350.363 kb on + strand, within MMP_RS01895 at 350.363 kb on + strand, within MMP_RS01895 at 350.363 kb on + strand, within MMP_RS01895 at 350.366 kb on - strand, within MMP_RS01895 at 350.367 kb on + strand, within MMP_RS01895 at 350.367 kb on + strand, within MMP_RS01895 at 350.378 kb on - strand, within MMP_RS01895 at 350.422 kb on - strand, within MMP_RS01895 at 350.456 kb on - strand, within MMP_RS01895 at 350.456 kb on - strand, within MMP_RS01895 at 350.456 kb on - strand, within MMP_RS01895 at 350.457 kb on + strand, within MMP_RS01895 at 350.460 kb on - strand, within MMP_RS01895 at 350.470 kb on - strand, within MMP_RS01895 at 350.474 kb on - strand, within MMP_RS01895 at 350.477 kb on - strand, within MMP_RS01895 at 350.477 kb on - strand, within MMP_RS01895 at 350.489 kb on + strand, within MMP_RS01895 at 350.532 kb on - strand, within MMP_RS01895 at 350.533 kb on + strand, within MMP_RS01895 at 350.546 kb on - strand, within MMP_RS01895 at 350.571 kb on - strand, within MMP_RS01895 at 350.587 kb on + strand, within MMP_RS01895 at 350.589 kb on - strand, within MMP_RS01895 at 350.589 kb on - strand, within MMP_RS01895 at 350.590 kb on + strand, within MMP_RS01895 at 350.657 kb on + strand, within MMP_RS01895 at 350.668 kb on - strand, within MMP_RS01895 at 350.785 kb on + strand, within MMP_RS01895 at 350.865 kb on + strand, within MMP_RS01895 at 350.884 kb on - strand, within MMP_RS01895 at 350.885 kb on + strand, within MMP_RS01895 at 350.885 kb on + strand, within MMP_RS01895 at 350.957 kb on + strand at 350.961 kb on - strand at 350.961 kb on - strand at 351.053 kb on + strand at 351.054 kb on - strand at 351.054 kb on - strand at 351.055 kb on + strand at 351.154 kb on + strand at 351.154 kb on + strand at 351.158 kb on - strand at 351.158 kb on - strand at 351.158 kb on - strand at 351.159 kb on + strand at 351.159 kb on + strand at 351.164 kb on + strand at 351.195 kb on - strand, within MMP_RS01900 at 351.196 kb on + strand, within MMP_RS01900 at 351.196 kb on + strand, within MMP_RS01900 at 351.197 kb on - strand, within MMP_RS01900 at 351.198 kb on + strand, within MMP_RS01900 at 351.268 kb on - strand, within MMP_RS01900 at 351.268 kb on - strand, within MMP_RS01900 at 351.269 kb on + strand, within MMP_RS01900 at 351.280 kb on - strand, within MMP_RS01900 at 351.280 kb on - strand, within MMP_RS01900 at 351.281 kb on + strand, within MMP_RS01900 at 351.302 kb on + strand, within MMP_RS01900 at 351.302 kb on + strand, within MMP_RS01900 at 351.304 kb on + strand, within MMP_RS01900 at 351.331 kb on + strand, within MMP_RS01900 at 351.355 kb on - strand, within MMP_RS01900 at 351.356 kb on + strand, within MMP_RS01900 at 351.362 kb on + strand, within MMP_RS01900 at 351.362 kb on + strand, within MMP_RS01900 at 351.433 kb on + strand, within MMP_RS01900 at 351.516 kb on - strand, within MMP_RS01900 at 351.542 kb on - strand, within MMP_RS01900 at 351.565 kb on + strand, within MMP_RS01900 at 351.637 kb on - strand, within MMP_RS01900 at 351.638 kb on + strand, within MMP_RS01900 at 351.639 kb on - strand, within MMP_RS01900 at 351.640 kb on + strand, within MMP_RS01900 at 351.669 kb on + strand, within MMP_RS01900 at 351.672 kb on - strand, within MMP_RS01900 at 351.686 kb on + strand, within MMP_RS01900 at 351.699 kb on - strand, within MMP_RS01900 at 351.700 kb on + strand, within MMP_RS01900 at 351.721 kb on - strand, within MMP_RS01900 at 351.721 kb on - strand, within MMP_RS01900 at 351.721 kb on - strand, within MMP_RS01900 at 351.728 kb on - strand, within MMP_RS01900 at 351.728 kb on - strand at 351.733 kb on - strand, within MMP_RS01900 at 351.805 kb on + strand, within MMP_RS01900 at 351.809 kb on - strand, within MMP_RS01900 at 351.812 kb on + strand, within MMP_RS01900 at 351.819 kb on + strand, within MMP_RS01900 at 351.819 kb on + strand, within MMP_RS01900 at 351.821 kb on - strand, within MMP_RS01900 at 351.856 kb on + strand, within MMP_RS01900 at 351.875 kb on - strand, within MMP_RS01900 at 351.885 kb on - strand, within MMP_RS01900 at 351.893 kb on - strand, within MMP_RS01900 at 351.893 kb on - strand, within MMP_RS01900 at 351.894 kb on + strand, within MMP_RS01900 at 351.894 kb on + strand, within MMP_RS01900 at 351.897 kb on - strand, within MMP_RS01900 at 351.898 kb on + strand, within MMP_RS01900 at 351.912 kb on - strand, within MMP_RS01900 at 351.967 kb on + strand, within MMP_RS01900 at 351.972 kb on + strand, within MMP_RS01900 at 351.976 kb on - strand, within MMP_RS01900 at 351.976 kb on - strand, within MMP_RS01900 at 351.977 kb on + strand, within MMP_RS01900 at 352.025 kb on - strand, within MMP_RS01900 at 352.026 kb on + strand, within MMP_RS01900 at 352.029 kb on - strand, within MMP_RS01900
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations remove 348,971 - MMP_RS01890 0.38 -4.8 349,041 - MMP_RS01890 0.44 -3.7 349,268 - MMP_RS01890 0.61 -0.9 349,294 - MMP_RS01890 0.63 -3.5 349,370 + MMP_RS01890 0.69 -5.6 349,384 - MMP_RS01890 0.70 -3.5 349,586 + MMP_RS01890 0.85 -2.9 349,691 + -3.1 349,709 - -2.7 349,709 - -2.5 349,710 + -4.8 349,713 + -4.2 349,754 - -1.8 349,754 - -3.9 349,774 + -5.4 349,825 - -2.5 349,862 + -4.7 349,867 - -2.5 349,888 + -3.4 349,939 + MMP_RS01895 0.11 -5.9 350,028 + MMP_RS01895 0.19 -3.8 350,035 - MMP_RS01895 0.19 -5.7 350,035 - MMP_RS01895 0.19 -4.0 350,035 - MMP_RS01895 0.19 -4.2 350,036 + MMP_RS01895 0.19 -3.1 350,094 - MMP_RS01895 0.24 -4.3 350,132 + MMP_RS01895 0.27 -4.7 350,151 + MMP_RS01895 0.28 -3.0 350,233 - MMP_RS01895 0.35 -4.6 350,233 - MMP_RS01895 0.35 -4.0 350,233 - MMP_RS01895 0.35 -5.9 350,233 - MMP_RS01895 0.35 -4.7 350,234 + MMP_RS01895 0.35 -3.9 350,234 + MMP_RS01895 0.35 -5.2 350,236 + MMP_RS01895 0.35 -3.5 350,239 - MMP_RS01895 0.36 -4.4 350,239 - MMP_RS01895 0.36 -4.5 350,240 + MMP_RS01895 0.36 -4.0 350,240 + MMP_RS01895 0.36 -3.0 350,257 + MMP_RS01895 0.37 -2.5 350,261 + MMP_RS01895 0.37 -4.8 350,326 - MMP_RS01895 0.43 -5.4 350,327 + MMP_RS01895 0.43 -5.7 350,356 - MMP_RS01895 0.45 -5.2 350,360 - MMP_RS01895 0.45 -4.0 350,362 - MMP_RS01895 0.46 -4.4 350,362 - MMP_RS01895 0.46 -3.4 350,363 + MMP_RS01895 0.46 -5.5 350,363 + MMP_RS01895 0.46 -5.2 350,363 + MMP_RS01895 0.46 -4.1 350,363 + MMP_RS01895 0.46 -5.1 350,366 - MMP_RS01895 0.46 -6.4 350,367 + MMP_RS01895 0.46 -4.7 350,367 + MMP_RS01895 0.46 -5.7 350,378 - MMP_RS01895 0.47 -5.0 350,422 - MMP_RS01895 0.50 -5.3 350,456 - MMP_RS01895 0.53 -2.8 350,456 - MMP_RS01895 0.53 -3.4 350,456 - MMP_RS01895 0.53 -2.8 350,457 + MMP_RS01895 0.53 -5.5 350,460 - MMP_RS01895 0.53 -3.6 350,470 - MMP_RS01895 0.54 -5.7 350,474 - MMP_RS01895 0.55 -4.4 350,477 - MMP_RS01895 0.55 -5.7 350,477 - MMP_RS01895 0.55 -4.5 350,489 + MMP_RS01895 0.56 -4.2 350,532 - MMP_RS01895 0.59 -5.4 350,533 + MMP_RS01895 0.59 -4.9 350,546 - MMP_RS01895 0.60 -4.5 350,571 - MMP_RS01895 0.62 -6.2 350,587 + MMP_RS01895 0.64 -4.9 350,589 - MMP_RS01895 0.64 -4.7 350,589 - MMP_RS01895 0.64 -3.9 350,590 + MMP_RS01895 0.64 -4.0 350,657 + MMP_RS01895 0.69 -3.6 350,668 - MMP_RS01895 0.70 -0.4 350,785 + MMP_RS01895 0.80 -5.0 350,865 + MMP_RS01895 0.86 -5.2 350,884 - MMP_RS01895 0.88 -5.0 350,885 + MMP_RS01895 0.88 -4.3 350,885 + MMP_RS01895 0.88 -5.0 350,957 + -5.9 350,961 - -3.5 350,961 - -4.2 351,053 + -4.2 351,054 - -4.9 351,054 - -3.6 351,055 + -3.6 351,154 + -4.0 351,154 + -3.5 351,158 - -3.6 351,158 - -3.8 351,158 - -4.6 351,159 + -4.6 351,159 + -3.6 351,164 + -4.7 351,195 - MMP_RS01900 0.12 -4.1 351,196 + MMP_RS01900 0.12 -3.9 351,196 + MMP_RS01900 0.12 -2.3 351,197 - MMP_RS01900 0.12 -3.4 351,198 + MMP_RS01900 0.12 -5.3 351,268 - MMP_RS01900 0.17 -3.7 351,268 - MMP_RS01900 0.17 -3.0 351,269 + MMP_RS01900 0.17 -4.3 351,280 - MMP_RS01900 0.18 -3.5 351,280 - MMP_RS01900 0.18 -4.0 351,281 + MMP_RS01900 0.18 -6.4 351,302 + MMP_RS01900 0.19 -4.9 351,302 + MMP_RS01900 0.19 -4.6 351,304 + MMP_RS01900 0.19 -4.8 351,331 + MMP_RS01900 0.21 -3.8 351,355 - MMP_RS01900 0.23 -3.8 351,356 + MMP_RS01900 0.23 -4.2 351,362 + MMP_RS01900 0.23 -5.7 351,362 + MMP_RS01900 0.23 -3.5 351,433 + MMP_RS01900 0.28 -3.2 351,516 - MMP_RS01900 0.33 -2.9 351,542 - MMP_RS01900 0.35 -5.3 351,565 + MMP_RS01900 0.37 -3.4 351,637 - MMP_RS01900 0.41 -3.7 351,638 + MMP_RS01900 0.42 -3.2 351,639 - MMP_RS01900 0.42 -3.9 351,640 + MMP_RS01900 0.42 -3.3 351,669 + MMP_RS01900 0.44 -4.5 351,672 - MMP_RS01900 0.44 -3.3 351,686 + MMP_RS01900 0.45 -4.2 351,699 - MMP_RS01900 0.46 -2.5 351,700 + MMP_RS01900 0.46 -4.3 351,721 - MMP_RS01900 0.47 -3.2 351,721 - MMP_RS01900 0.47 -2.7 351,721 - MMP_RS01900 0.47 -2.6 351,728 - MMP_RS01900 0.48 -2.6 351,728 - -0.6 351,733 - MMP_RS01900 0.48 -2.5 351,805 + MMP_RS01900 0.53 -4.3 351,809 - MMP_RS01900 0.53 -5.1 351,812 + MMP_RS01900 0.53 -5.9 351,819 + MMP_RS01900 0.54 -5.1 351,819 + MMP_RS01900 0.54 -4.9 351,821 - MMP_RS01900 0.54 -3.3 351,856 + MMP_RS01900 0.56 -3.3 351,875 - MMP_RS01900 0.57 -4.0 351,885 - MMP_RS01900 0.58 -5.3 351,893 - MMP_RS01900 0.59 -4.3 351,893 - MMP_RS01900 0.59 -4.9 351,894 + MMP_RS01900 0.59 -0.4 351,894 + MMP_RS01900 0.59 -3.2 351,897 - MMP_RS01900 0.59 -4.4 351,898 + MMP_RS01900 0.59 -4.2 351,912 - MMP_RS01900 0.60 -3.6 351,967 + MMP_RS01900 0.63 -3.2 351,972 + MMP_RS01900 0.64 -5.9 351,976 - MMP_RS01900 0.64 -5.4 351,976 - MMP_RS01900 0.64 -6.2 351,977 + MMP_RS01900 0.64 -4.6 352,025 - MMP_RS01900 0.67 -4.7 352,026 + MMP_RS01900 0.67 -4.6 352,029 - MMP_RS01900 0.68 -3.2
Or see this region's nucleotide sequence