Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01455

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01450 and MMP_RS01455 are separated by 245 nucleotidesMMP_RS01455 and MMP_RS01460 are separated by 23 nucleotidesMMP_RS01460 and MMP_RS01465 are separated by 1 nucleotides MMP_RS01450: MMP_RS01450 - tRNA pseudouridine(38-40) synthase TruA, at 267,810 to 268,598 _RS01450 MMP_RS01455: MMP_RS01455 - nickel pincer cofactor biosynthesis protein LarC, at 268,844 to 270,058 _RS01455 MMP_RS01460: MMP_RS01460 - hypothetical protein, at 270,082 to 270,741 _RS01460 MMP_RS01465: MMP_RS01465 - hypothetical protein, at 270,743 to 271,441 _RS01465 Position (kb) 268 269 270 271Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 267.904 kb on - strand, within MMP_RS01450at 267.904 kb on - strand, within MMP_RS01450at 267.904 kb on - strand, within MMP_RS01450at 267.905 kb on + strand, within MMP_RS01450at 267.905 kb on + strand, within MMP_RS01450at 267.926 kb on - strand, within MMP_RS01450at 267.930 kb on + strand, within MMP_RS01450at 267.988 kb on - strand, within MMP_RS01450at 268.037 kb on - strand, within MMP_RS01450at 268.107 kb on - strand, within MMP_RS01450at 268.279 kb on + strand, within MMP_RS01450at 268.283 kb on - strand, within MMP_RS01450at 268.283 kb on - strand, within MMP_RS01450at 268.283 kb on - strand, within MMP_RS01450at 268.283 kb on - strand, within MMP_RS01450at 268.284 kb on + strand, within MMP_RS01450at 268.284 kb on + strand, within MMP_RS01450at 268.284 kb on + strand, within MMP_RS01450at 268.413 kb on - strand, within MMP_RS01450at 268.418 kb on + strand, within MMP_RS01450at 268.434 kb on - strand, within MMP_RS01450at 268.587 kb on + strandat 268.587 kb on + strandat 268.590 kb on - strandat 268.590 kb on - strandat 268.594 kb on - strandat 268.594 kb on - strandat 268.602 kb on + strandat 268.602 kb on + strandat 268.610 kb on - strandat 268.612 kb on - strandat 268.612 kb on - strandat 268.612 kb on - strandat 268.612 kb on - strandat 268.613 kb on + strandat 268.657 kb on - strandat 268.657 kb on - strandat 268.657 kb on - strandat 268.660 kb on + strandat 268.694 kb on - strandat 268.694 kb on - strandat 268.701 kb on + strandat 268.703 kb on - strandat 268.704 kb on + strandat 269.100 kb on - strand, within MMP_RS01455at 269.110 kb on - strand, within MMP_RS01455at 269.155 kb on - strand, within MMP_RS01455at 269.157 kb on - strand, within MMP_RS01455at 269.209 kb on + strand, within MMP_RS01455at 269.283 kb on + strand, within MMP_RS01455at 269.701 kb on + strand, within MMP_RS01455at 269.824 kb on - strand, within MMP_RS01455at 270.061 kb on + strandat 270.061 kb on + strandat 270.064 kb on - strandat 270.069 kb on - strandat 270.069 kb on - strandat 270.070 kb on + strandat 270.070 kb on + strandat 270.071 kb on - strandat 270.071 kb on - strandat 270.072 kb on + strandat 270.075 kb on + strandat 270.078 kb on - strandat 270.079 kb on + strandat 270.084 kb on + strandat 270.088 kb on - strandat 270.224 kb on - strand, within MMP_RS01460at 270.224 kb on - strand, within MMP_RS01460at 270.324 kb on + strand, within MMP_RS01460at 270.756 kb on - strandat 271.001 kb on - strand, within MMP_RS01465at 271.023 kb on + strand, within MMP_RS01465at 271.037 kb on + strand, within MMP_RS01465

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
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267,904 - MMP_RS01450 0.12 -0.9
267,904 - MMP_RS01450 0.12 +1.8
267,904 - MMP_RS01450 0.12 +0.5
267,905 + MMP_RS01450 0.12 -3.6
267,905 + MMP_RS01450 0.12 -5.2
267,926 - MMP_RS01450 0.15 +0.4
267,930 + MMP_RS01450 0.15 +0.1
267,988 - MMP_RS01450 0.23 +2.3
268,037 - MMP_RS01450 0.29 +0.8
268,107 - MMP_RS01450 0.38 +2.0
268,279 + MMP_RS01450 0.59 +0.7
268,283 - MMP_RS01450 0.60 +0.1
268,283 - MMP_RS01450 0.60 +0.8
268,283 - MMP_RS01450 0.60 -4.2
268,283 - MMP_RS01450 0.60 +1.1
268,284 + MMP_RS01450 0.60 +0.7
268,284 + MMP_RS01450 0.60 +0.6
268,284 + MMP_RS01450 0.60 +1.7
268,413 - MMP_RS01450 0.76 +0.6
268,418 + MMP_RS01450 0.77 -0.5
268,434 - MMP_RS01450 0.79 +0.7
268,587 + -1.0
268,587 + +0.6
268,590 - +1.4
268,590 - +0.2
268,594 - -1.3
268,594 - -0.5
268,602 + +1.1
268,602 + +0.3
268,610 - -0.3
268,612 - +0.5
268,612 - +1.2
268,612 - -0.2
268,612 - -0.6
268,613 + +0.6
268,657 - +0.4
268,657 - +0.1
268,657 - +1.6
268,660 + +0.1
268,694 - -0.3
268,694 - +0.9
268,701 + +1.1
268,703 - +0.5
268,704 + -0.4
269,100 - MMP_RS01455 0.21 -5.8
269,110 - MMP_RS01455 0.22 -5.0
269,155 - MMP_RS01455 0.26 -2.2
269,157 - MMP_RS01455 0.26 -5.2
269,209 + MMP_RS01455 0.30 -5.8
269,283 + MMP_RS01455 0.36 -5.0
269,701 + MMP_RS01455 0.71 -5.9
269,824 - MMP_RS01455 0.81 -6.0
270,061 + -1.2
270,061 + +0.1
270,064 - -0.4
270,069 - -0.7
270,069 - +0.2
270,070 + +1.0
270,070 + +0.6
270,071 - +1.3
270,071 - +0.5
270,072 + +0.2
270,075 + +0.8
270,078 - +0.7
270,079 + -0.4
270,084 + +0.3
270,088 - +1.1
270,224 - MMP_RS01460 0.22 -0.4
270,224 - MMP_RS01460 0.22 -0.1
270,324 + MMP_RS01460 0.37 +1.7
270,756 - +0.9
271,001 - MMP_RS01465 0.37 +0.8
271,023 + MMP_RS01465 0.40 -3.4
271,037 + MMP_RS01465 0.42 +0.6

Or see this region's nucleotide sequence