Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01020

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01010 and MMP_RS01015 are separated by 250 nucleotidesMMP_RS01015 and MMP_RS01020 are separated by 170 nucleotidesMMP_RS01020 and MMP_RS01025 are separated by 120 nucleotidesMMP_RS01025 and MMP_RS01030 are separated by 108 nucleotides MMP_RS01010: MMP_RS01010 - DUF4352 domain-containing protein, at 191,240 to 191,773 _RS01010 MMP_RS01015: MMP_RS01015 - hypothetical protein, at 192,024 to 192,236 _RS01015 MMP_RS01020: MMP_RS01020 - 3 4-dihydroxy-2-butanone-4-phosphate synthase, at 192,407 to 193,150 _RS01020 MMP_RS01025: MMP_RS01025 - DUF120 domain-containing protein, at 193,271 to 193,654 _RS01025 MMP_RS01030: MMP_RS01030 - MTAP family purine nucleoside phosphorylase, at 193,763 to 194,524 _RS01030 Position (kb) 192 193 194Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 191.442 kb on + strand, within MMP_RS01010at 191.478 kb on + strand, within MMP_RS01010at 191.519 kb on + strand, within MMP_RS01010at 191.522 kb on - strand, within MMP_RS01010at 191.523 kb on + strand, within MMP_RS01010at 191.572 kb on - strand, within MMP_RS01010at 191.572 kb on - strand, within MMP_RS01010at 191.715 kb on + strand, within MMP_RS01010at 191.740 kb on - strandat 191.750 kb on - strandat 191.750 kb on - strandat 191.753 kb on - strandat 191.754 kb on + strandat 191.754 kb on + strandat 191.754 kb on + strandat 191.755 kb on - strandat 191.756 kb on + strandat 191.779 kb on - strandat 191.780 kb on + strandat 191.781 kb on - strandat 191.795 kb on - strandat 191.795 kb on - strandat 191.795 kb on - strandat 191.801 kb on + strandat 191.801 kb on + strandat 191.841 kb on + strandat 191.852 kb on + strandat 191.854 kb on - strandat 191.855 kb on + strandat 191.871 kb on + strandat 191.874 kb on - strandat 191.875 kb on + strandat 191.912 kb on - strandat 191.993 kb on - strandat 191.994 kb on + strandat 192.305 kb on - strandat 192.321 kb on - strandat 192.749 kb on + strand, within MMP_RS01020at 193.106 kb on - strandat 193.107 kb on + strandat 193.165 kb on + strandat 193.170 kb on - strandat 193.193 kb on + strandat 193.198 kb on - strandat 193.198 kb on - strandat 193.198 kb on - strandat 193.199 kb on + strandat 193.199 kb on + strandat 193.199 kb on + strandat 193.199 kb on + strandat 193.199 kb on + strandat 193.200 kb on - strandat 193.200 kb on - strandat 193.201 kb on + strandat 193.201 kb on + strandat 193.201 kb on + strandat 193.201 kb on + strandat 193.201 kb on + strandat 193.201 kb on + strandat 193.203 kb on + strandat 193.229 kb on - strandat 193.305 kb on + strandat 193.431 kb on + strandat 193.672 kb on - strandat 193.672 kb on - strandat 193.674 kb on - strandat 193.677 kb on + strandat 193.677 kb on + strandat 193.677 kb on + strandat 193.698 kb on + strandat 193.711 kb on + strandat 193.714 kb on - strandat 193.740 kb on + strandat 193.760 kb on - strandat 193.857 kb on - strand, within MMP_RS01030at 193.989 kb on - strand, within MMP_RS01030at 193.989 kb on - strand, within MMP_RS01030at 194.124 kb on - strand, within MMP_RS01030

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
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191,442 + MMP_RS01010 0.38 +1.1
191,478 + MMP_RS01010 0.45 +0.7
191,519 + MMP_RS01010 0.52 +0.1
191,522 - MMP_RS01010 0.53 -0.5
191,523 + MMP_RS01010 0.53 +0.4
191,572 - MMP_RS01010 0.62 +0.7
191,572 - MMP_RS01010 0.62 +0.7
191,715 + MMP_RS01010 0.89 -1.1
191,740 - +0.4
191,750 - +1.7
191,750 - +0.3
191,753 - +0.9
191,754 + +1.3
191,754 + +2.0
191,754 + -1.5
191,755 - -0.7
191,756 + -0.4
191,779 - +0.1
191,780 + -0.6
191,781 - -0.2
191,795 - -0.5
191,795 - +0.0
191,795 - +1.3
191,801 + +1.0
191,801 + +0.6
191,841 + +1.1
191,852 + +0.2
191,854 - -4.1
191,855 + +0.4
191,871 + -0.3
191,874 - -0.0
191,875 + +0.6
191,912 - -0.3
191,993 - -1.0
191,994 + -0.4
192,305 - -0.1
192,321 - +0.4
192,749 + MMP_RS01020 0.46 -5.4
193,106 - -5.6
193,107 + -4.4
193,165 + -3.2
193,170 - -4.8
193,193 + -2.0
193,198 - +0.2
193,198 - -1.4
193,198 - +1.6
193,199 + -0.6
193,199 + +0.2
193,199 + -1.8
193,199 + -1.5
193,199 + -0.2
193,200 - +0.4
193,200 - +0.3
193,201 + +1.2
193,201 + -2.0
193,201 + +0.5
193,201 + +1.6
193,201 + +0.3
193,201 + +0.8
193,203 + +1.3
193,229 - +1.2
193,305 + -2.8
193,431 + -2.5
193,672 - -3.1
193,672 - -3.3
193,674 - -1.9
193,677 + -4.3
193,677 + -3.8
193,677 + -4.2
193,698 + -6.0
193,711 + -5.2
193,714 - -6.6
193,740 + -1.2
193,760 - -4.6
193,857 - MMP_RS01030 0.12 -0.1
193,989 - MMP_RS01030 0.30 -3.9
193,989 - MMP_RS01030 0.30 -0.0
194,124 - MMP_RS01030 0.47 -0.8

Or see this region's nucleotide sequence