Strain Fitness in Rahnella sp. WP5 around EX31_RS23305

Experiment: L-Glutamine (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS23300 and EX31_RS23305 are separated by 76 nucleotidesEX31_RS23305 and EX31_RS23310 are separated by 261 nucleotides EX31_RS23300: EX31_RS23300 - methyl-accepting chemotaxis protein, at 420,632 to 422,296 _RS23300 EX31_RS23305: EX31_RS23305 - LexA regulated protein, at 422,373 to 422,654 _RS23305 EX31_RS23310: EX31_RS23310 - esterase, at 422,916 to 423,698 _RS23310 Position (kb) 422 423Strain fitness (log2 ratio) -2 -1 0 1 2at 421.378 kb on + strand, within EX31_RS23300at 421.424 kb on - strand, within EX31_RS23300at 421.460 kb on + strand, within EX31_RS23300at 421.460 kb on + strand, within EX31_RS23300at 421.460 kb on + strand, within EX31_RS23300at 421.461 kb on - strand, within EX31_RS23300at 421.461 kb on - strand, within EX31_RS23300at 421.511 kb on - strand, within EX31_RS23300at 421.570 kb on + strand, within EX31_RS23300at 421.687 kb on + strand, within EX31_RS23300at 421.687 kb on + strand, within EX31_RS23300at 421.976 kb on - strand, within EX31_RS23300at 422.100 kb on + strand, within EX31_RS23300at 422.101 kb on - strand, within EX31_RS23300at 422.101 kb on - strand, within EX31_RS23300at 422.167 kb on + strandat 422.167 kb on + strandat 422.168 kb on - strandat 422.168 kb on - strandat 422.168 kb on - strandat 422.179 kb on + strandat 422.179 kb on + strandat 422.179 kb on + strandat 422.180 kb on - strandat 422.186 kb on - strandat 422.314 kb on - strandat 422.317 kb on - strandat 422.317 kb on - strandat 422.323 kb on + strandat 422.324 kb on - strandat 422.391 kb on - strandat 422.435 kb on + strand, within EX31_RS23305at 422.436 kb on - strand, within EX31_RS23305at 422.456 kb on + strand, within EX31_RS23305at 422.457 kb on - strand, within EX31_RS23305at 422.457 kb on - strand, within EX31_RS23305at 422.457 kb on - strand, within EX31_RS23305at 422.466 kb on - strand, within EX31_RS23305at 422.466 kb on - strand, within EX31_RS23305at 422.466 kb on - strand, within EX31_RS23305at 422.466 kb on - strand, within EX31_RS23305at 422.544 kb on - strand, within EX31_RS23305at 422.654 kb on + strandat 422.654 kb on + strandat 422.654 kb on + strandat 422.655 kb on - strandat 422.655 kb on - strandat 422.655 kb on - strandat 422.665 kb on - strandat 422.665 kb on - strandat 422.797 kb on - strandat 422.799 kb on - strandat 422.812 kb on - strandat 422.812 kb on - strandat 422.812 kb on - strandat 422.862 kb on - strandat 422.870 kb on - strandat 422.911 kb on - strandat 422.952 kb on + strandat 422.953 kb on - strandat 422.953 kb on - strandat 423.061 kb on + strand, within EX31_RS23310at 423.062 kb on - strand, within EX31_RS23310at 423.062 kb on - strand, within EX31_RS23310at 423.062 kb on - strand, within EX31_RS23310at 423.131 kb on + strand, within EX31_RS23310at 423.131 kb on + strand, within EX31_RS23310at 423.132 kb on - strand, within EX31_RS23310at 423.132 kb on - strand, within EX31_RS23310at 423.132 kb on - strand, within EX31_RS23310at 423.132 kb on - strand, within EX31_RS23310at 423.225 kb on + strand, within EX31_RS23310at 423.225 kb on + strand, within EX31_RS23310at 423.225 kb on + strand, within EX31_RS23310at 423.225 kb on + strand, within EX31_RS23310at 423.225 kb on + strand, within EX31_RS23310at 423.226 kb on - strand, within EX31_RS23310at 423.226 kb on - strand, within EX31_RS23310at 423.226 kb on - strand, within EX31_RS23310at 423.226 kb on - strand, within EX31_RS23310at 423.226 kb on - strand, within EX31_RS23310at 423.226 kb on - strand, within EX31_RS23310at 423.226 kb on - strand, within EX31_RS23310at 423.227 kb on + strand, within EX31_RS23310at 423.227 kb on + strand, within EX31_RS23310at 423.228 kb on - strand, within EX31_RS23310at 423.228 kb on - strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.229 kb on + strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.230 kb on - strand, within EX31_RS23310at 423.233 kb on + strand, within EX31_RS23310at 423.233 kb on + strand, within EX31_RS23310at 423.233 kb on + strand, within EX31_RS23310at 423.233 kb on + strand, within EX31_RS23310at 423.233 kb on + strand, within EX31_RS23310at 423.233 kb on + strand, within EX31_RS23310at 423.233 kb on + strand, within EX31_RS23310at 423.234 kb on - strand, within EX31_RS23310at 423.234 kb on - strand, within EX31_RS23310at 423.234 kb on - strand, within EX31_RS23310at 423.234 kb on - strand, within EX31_RS23310at 423.234 kb on - strand, within EX31_RS23310at 423.257 kb on + strand, within EX31_RS23310at 423.291 kb on - strand, within EX31_RS23310at 423.493 kb on + strand, within EX31_RS23310at 423.530 kb on + strand, within EX31_RS23310at 423.554 kb on + strand, within EX31_RS23310at 423.555 kb on - strand, within EX31_RS23310at 423.594 kb on - strand, within EX31_RS23310

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); RCH2 media; no shaking
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421,378 + EX31_RS23300 0.45 +0.4
421,424 - EX31_RS23300 0.48 -1.3
421,460 + EX31_RS23300 0.50 -0.7
421,460 + EX31_RS23300 0.50 -1.1
421,460 + EX31_RS23300 0.50 -0.5
421,461 - EX31_RS23300 0.50 -0.7
421,461 - EX31_RS23300 0.50 -0.3
421,511 - EX31_RS23300 0.53 -1.2
421,570 + EX31_RS23300 0.56 -2.2
421,687 + EX31_RS23300 0.63 -0.9
421,687 + EX31_RS23300 0.63 -1.3
421,976 - EX31_RS23300 0.81 +0.0
422,100 + EX31_RS23300 0.88 +0.2
422,101 - EX31_RS23300 0.88 -1.3
422,101 - EX31_RS23300 0.88 +0.1
422,167 + +0.2
422,167 + -0.1
422,168 - -0.2
422,168 - +0.2
422,168 - -0.3
422,179 + -0.6
422,179 + -1.4
422,179 + -1.1
422,180 - -0.4
422,186 - -0.6
422,314 - -0.6
422,317 - -0.1
422,317 - +1.0
422,323 + +0.7
422,324 - +0.1
422,391 - -0.6
422,435 + EX31_RS23305 0.22 +1.1
422,436 - EX31_RS23305 0.22 +0.1
422,456 + EX31_RS23305 0.29 +1.3
422,457 - EX31_RS23305 0.30 +0.7
422,457 - EX31_RS23305 0.30 +0.9
422,457 - EX31_RS23305 0.30 +0.9
422,466 - EX31_RS23305 0.33 +0.1
422,466 - EX31_RS23305 0.33 -0.3
422,466 - EX31_RS23305 0.33 +1.4
422,466 - EX31_RS23305 0.33 +0.2
422,544 - EX31_RS23305 0.61 -1.1
422,654 + +1.2
422,654 + +1.3
422,654 + -0.7
422,655 - -0.0
422,655 - +0.0
422,655 - +1.0
422,665 - +0.1
422,665 - +0.0
422,797 - -0.1
422,799 - -0.2
422,812 - -0.2
422,812 - +1.7
422,812 - +0.5
422,862 - +1.1
422,870 - -0.4
422,911 - +1.8
422,952 + +1.9
422,953 - +1.0
422,953 - -1.8
423,061 + EX31_RS23310 0.19 +0.3
423,062 - EX31_RS23310 0.19 -1.2
423,062 - EX31_RS23310 0.19 +0.2
423,062 - EX31_RS23310 0.19 +0.1
423,131 + EX31_RS23310 0.27 -0.1
423,131 + EX31_RS23310 0.27 +0.4
423,132 - EX31_RS23310 0.28 -0.7
423,132 - EX31_RS23310 0.28 -0.4
423,132 - EX31_RS23310 0.28 -0.8
423,132 - EX31_RS23310 0.28 +1.5
423,225 + EX31_RS23310 0.39 -0.6
423,225 + EX31_RS23310 0.39 -0.4
423,225 + EX31_RS23310 0.39 -0.7
423,225 + EX31_RS23310 0.39 +1.4
423,225 + EX31_RS23310 0.39 -1.1
423,226 - EX31_RS23310 0.40 -0.3
423,226 - EX31_RS23310 0.40 +0.2
423,226 - EX31_RS23310 0.40 -0.8
423,226 - EX31_RS23310 0.40 -0.0
423,226 - EX31_RS23310 0.40 +0.5
423,226 - EX31_RS23310 0.40 -0.1
423,226 - EX31_RS23310 0.40 -0.6
423,227 + EX31_RS23310 0.40 -0.8
423,227 + EX31_RS23310 0.40 +0.9
423,228 - EX31_RS23310 0.40 -0.8
423,228 - EX31_RS23310 0.40 -1.0
423,229 + EX31_RS23310 0.40 +0.3
423,229 + EX31_RS23310 0.40 +0.3
423,229 + EX31_RS23310 0.40 +0.3
423,229 + EX31_RS23310 0.40 -1.7
423,229 + EX31_RS23310 0.40 +0.0
423,229 + EX31_RS23310 0.40 +0.8
423,229 + EX31_RS23310 0.40 -0.8
423,229 + EX31_RS23310 0.40 -1.0
423,229 + EX31_RS23310 0.40 +0.6
423,229 + EX31_RS23310 0.40 +0.8
423,229 + EX31_RS23310 0.40 +0.6
423,229 + EX31_RS23310 0.40 +0.9
423,229 + EX31_RS23310 0.40 +1.2
423,229 + EX31_RS23310 0.40 -0.3
423,229 + EX31_RS23310 0.40 +0.9
423,229 + EX31_RS23310 0.40 -0.3
423,229 + EX31_RS23310 0.40 -0.8
423,229 + EX31_RS23310 0.40 +1.9
423,229 + EX31_RS23310 0.40 -0.3
423,229 + EX31_RS23310 0.40 -0.3
423,229 + EX31_RS23310 0.40 +1.5
423,230 - EX31_RS23310 0.40 -0.7
423,230 - EX31_RS23310 0.40 -0.3
423,230 - EX31_RS23310 0.40 -0.1
423,230 - EX31_RS23310 0.40 -1.2
423,230 - EX31_RS23310 0.40 +0.1
423,230 - EX31_RS23310 0.40 -0.4
423,230 - EX31_RS23310 0.40 +0.1
423,230 - EX31_RS23310 0.40 +0.3
423,230 - EX31_RS23310 0.40 +0.9
423,230 - EX31_RS23310 0.40 -1.3
423,230 - EX31_RS23310 0.40 +2.3
423,230 - EX31_RS23310 0.40 +0.2
423,230 - EX31_RS23310 0.40 +0.1
423,230 - EX31_RS23310 0.40 +0.9
423,230 - EX31_RS23310 0.40 -0.1
423,230 - EX31_RS23310 0.40 +0.8
423,230 - EX31_RS23310 0.40 -0.5
423,230 - EX31_RS23310 0.40 +0.2
423,230 - EX31_RS23310 0.40 -0.0
423,230 - EX31_RS23310 0.40 +1.3
423,230 - EX31_RS23310 0.40 +0.7
423,233 + EX31_RS23310 0.40 -0.9
423,233 + EX31_RS23310 0.40 +0.6
423,233 + EX31_RS23310 0.40 +1.9
423,233 + EX31_RS23310 0.40 -0.9
423,233 + EX31_RS23310 0.40 +1.4
423,233 + EX31_RS23310 0.40 +0.5
423,233 + EX31_RS23310 0.40 +1.2
423,234 - EX31_RS23310 0.41 +1.9
423,234 - EX31_RS23310 0.41 -0.2
423,234 - EX31_RS23310 0.41 +0.5
423,234 - EX31_RS23310 0.41 -1.4
423,234 - EX31_RS23310 0.41 +0.0
423,257 + EX31_RS23310 0.44 -0.1
423,291 - EX31_RS23310 0.48 +0.0
423,493 + EX31_RS23310 0.74 +0.1
423,530 + EX31_RS23310 0.78 +0.3
423,554 + EX31_RS23310 0.81 +0.9
423,555 - EX31_RS23310 0.82 +0.6
423,594 - EX31_RS23310 0.87 -0.7

Or see this region's nucleotide sequence