Strain Fitness in Rahnella sp. WP5 around EX31_RS14190

Experiment: L-Glutamine (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS14180 and EX31_RS14185 are separated by 83 nucleotidesEX31_RS14185 and EX31_RS14190 are separated by 131 nucleotidesEX31_RS14190 and EX31_RS14195 are separated by 137 nucleotides EX31_RS14180: EX31_RS14180 - argininosuccinate lyase, at 12,033 to 13,406 _RS14180 EX31_RS14185: EX31_RS14185 - acetylglutamate kinase, at 13,490 to 14,263 _RS14185 EX31_RS14190: EX31_RS14190 - N-acetyl-gamma-glutamyl-phosphate reductase, at 14,395 to 15,399 _RS14190 EX31_RS14195: EX31_RS14195 - acetylornithine deacetylase, at 15,537 to 16,688 _RS14195 Position (kb) 14 15 16Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 13.427 kb on + strandat 13.444 kb on + strandat 13.444 kb on + strandat 13.445 kb on - strandat 13.445 kb on - strandat 13.445 kb on - strandat 13.445 kb on - strandat 13.445 kb on - strandat 13.445 kb on - strandat 13.445 kb on - strandat 13.466 kb on + strandat 13.466 kb on + strandat 13.491 kb on + strandat 13.501 kb on + strandat 13.501 kb on + strandat 13.501 kb on + strandat 13.501 kb on + strandat 13.501 kb on + strandat 13.501 kb on + strandat 13.501 kb on + strandat 13.501 kb on + strandat 13.502 kb on - strandat 13.502 kb on - strandat 13.502 kb on - strandat 13.502 kb on - strandat 13.502 kb on - strandat 13.502 kb on - strandat 13.502 kb on - strandat 13.502 kb on - strandat 13.567 kb on + strandat 13.567 kb on + strandat 13.568 kb on - strand, within EX31_RS14185at 13.639 kb on + strand, within EX31_RS14185at 13.640 kb on - strand, within EX31_RS14185at 13.640 kb on - strand, within EX31_RS14185at 13.640 kb on - strand, within EX31_RS14185at 13.642 kb on + strand, within EX31_RS14185at 13.642 kb on + strand, within EX31_RS14185at 13.642 kb on + strand, within EX31_RS14185at 13.642 kb on + strand, within EX31_RS14185at 13.642 kb on + strand, within EX31_RS14185at 13.690 kb on + strand, within EX31_RS14185at 13.690 kb on + strand, within EX31_RS14185at 13.690 kb on + strand, within EX31_RS14185at 13.845 kb on + strand, within EX31_RS14185at 13.845 kb on + strand, within EX31_RS14185at 13.846 kb on - strand, within EX31_RS14185at 13.867 kb on + strand, within EX31_RS14185at 13.868 kb on - strand, within EX31_RS14185at 14.041 kb on + strand, within EX31_RS14185at 14.042 kb on - strand, within EX31_RS14185at 14.166 kb on + strand, within EX31_RS14185at 14.166 kb on + strand, within EX31_RS14185at 14.166 kb on + strand, within EX31_RS14185at 14.167 kb on - strand, within EX31_RS14185at 14.178 kb on + strand, within EX31_RS14185at 14.178 kb on + strand, within EX31_RS14185at 14.178 kb on + strand, within EX31_RS14185at 14.240 kb on + strandat 14.240 kb on + strandat 14.240 kb on + strandat 14.241 kb on - strandat 14.247 kb on - strandat 14.263 kb on + strandat 14.263 kb on + strandat 14.263 kb on + strandat 14.264 kb on - strandat 14.264 kb on - strandat 14.264 kb on - strandat 14.264 kb on - strandat 14.264 kb on - strandat 14.264 kb on - strandat 14.295 kb on + strandat 14.296 kb on - strandat 14.299 kb on + strandat 14.299 kb on + strandat 14.299 kb on + strandat 14.300 kb on - strandat 14.300 kb on - strandat 14.302 kb on + strandat 14.302 kb on + strandat 14.303 kb on - strandat 14.303 kb on - strandat 14.308 kb on + strandat 14.308 kb on + strandat 14.308 kb on + strandat 14.309 kb on - strandat 14.309 kb on - strandat 14.309 kb on - strandat 14.309 kb on - strandat 14.310 kb on + strandat 14.310 kb on + strandat 14.310 kb on + strandat 14.311 kb on - strandat 14.311 kb on - strandat 14.311 kb on - strandat 14.311 kb on - strandat 14.314 kb on + strandat 14.314 kb on + strandat 14.314 kb on + strandat 14.319 kb on + strandat 14.319 kb on + strandat 14.320 kb on - strandat 14.324 kb on + strandat 14.325 kb on - strandat 14.325 kb on - strandat 14.325 kb on - strandat 14.325 kb on - strandat 14.325 kb on - strandat 14.325 kb on - strandat 14.325 kb on - strandat 14.346 kb on - strandat 14.469 kb on + strandat 14.470 kb on - strandat 14.478 kb on + strandat 14.582 kb on + strand, within EX31_RS14190at 14.583 kb on - strand, within EX31_RS14190at 14.610 kb on - strand, within EX31_RS14190at 14.616 kb on + strand, within EX31_RS14190at 14.617 kb on - strand, within EX31_RS14190at 14.674 kb on - strand, within EX31_RS14190at 14.674 kb on - strand, within EX31_RS14190at 14.674 kb on - strand, within EX31_RS14190at 14.674 kb on - strand, within EX31_RS14190at 14.781 kb on - strand, within EX31_RS14190at 14.781 kb on - strand, within EX31_RS14190at 14.781 kb on - strand, within EX31_RS14190at 14.841 kb on + strand, within EX31_RS14190at 14.911 kb on - strand, within EX31_RS14190at 14.911 kb on - strand, within EX31_RS14190at 14.971 kb on + strand, within EX31_RS14190at 14.972 kb on - strand, within EX31_RS14190at 14.972 kb on - strand, within EX31_RS14190at 14.972 kb on - strand, within EX31_RS14190at 15.002 kb on + strand, within EX31_RS14190at 15.048 kb on - strand, within EX31_RS14190at 15.059 kb on + strand, within EX31_RS14190at 15.059 kb on + strand, within EX31_RS14190at 15.059 kb on + strand, within EX31_RS14190at 15.059 kb on + strand, within EX31_RS14190at 15.060 kb on - strand, within EX31_RS14190at 15.060 kb on - strand, within EX31_RS14190at 15.060 kb on - strand, within EX31_RS14190at 15.094 kb on + strand, within EX31_RS14190at 15.094 kb on + strand, within EX31_RS14190at 15.095 kb on - strand, within EX31_RS14190at 15.095 kb on - strand, within EX31_RS14190at 15.095 kb on - strand, within EX31_RS14190at 15.106 kb on + strand, within EX31_RS14190at 15.107 kb on - strand, within EX31_RS14190at 15.173 kb on - strand, within EX31_RS14190at 15.173 kb on - strand, within EX31_RS14190at 15.245 kb on - strand, within EX31_RS14190at 15.268 kb on + strand, within EX31_RS14190at 15.268 kb on + strand, within EX31_RS14190at 15.321 kb on + strandat 15.321 kb on + strandat 15.321 kb on + strandat 15.321 kb on + strandat 15.321 kb on + strandat 15.321 kb on + strandat 15.321 kb on + strandat 15.321 kb on + strandat 15.321 kb on + strandat 15.321 kb on + strandat 15.321 kb on + strandat 15.321 kb on + strandat 15.321 kb on + strandat 15.321 kb on + strandat 15.321 kb on + strandat 15.321 kb on + strandat 15.322 kb on - strandat 15.322 kb on - strandat 15.322 kb on - strandat 15.322 kb on - strandat 15.322 kb on - strandat 15.322 kb on - strandat 15.322 kb on - strandat 15.322 kb on - strandat 15.322 kb on - strandat 15.322 kb on - strandat 15.322 kb on - strandat 15.342 kb on - strandat 15.342 kb on - strandat 15.366 kb on - strandat 15.390 kb on + strandat 15.390 kb on + strandat 15.390 kb on + strandat 15.390 kb on + strandat 15.391 kb on - strandat 15.391 kb on - strandat 15.394 kb on + strandat 15.394 kb on + strandat 15.394 kb on + strandat 15.395 kb on - strandat 15.395 kb on - strandat 15.395 kb on - strandat 15.395 kb on - strandat 15.399 kb on + strandat 15.400 kb on - strandat 15.400 kb on - strandat 15.400 kb on - strandat 15.472 kb on + strandat 15.513 kb on + strandat 15.522 kb on + strandat 15.523 kb on - strandat 15.523 kb on - strandat 15.523 kb on - strandat 15.523 kb on - strandat 15.550 kb on + strandat 15.551 kb on - strandat 15.551 kb on - strandat 15.560 kb on + strandat 15.560 kb on + strandat 15.561 kb on - strandat 15.580 kb on + strandat 15.650 kb on - strandat 15.650 kb on - strandat 15.673 kb on + strand, within EX31_RS14195at 15.674 kb on - strand, within EX31_RS14195at 15.674 kb on - strand, within EX31_RS14195at 15.674 kb on - strand, within EX31_RS14195at 15.674 kb on - strand, within EX31_RS14195at 15.777 kb on - strand, within EX31_RS14195at 15.845 kb on + strand, within EX31_RS14195at 15.846 kb on - strand, within EX31_RS14195at 15.846 kb on - strand, within EX31_RS14195at 15.852 kb on + strand, within EX31_RS14195at 15.852 kb on + strand, within EX31_RS14195at 15.852 kb on + strand, within EX31_RS14195at 15.852 kb on + strand, within EX31_RS14195at 15.852 kb on + strand, within EX31_RS14195at 15.853 kb on - strand, within EX31_RS14195at 15.853 kb on - strand, within EX31_RS14195at 15.936 kb on - strand, within EX31_RS14195at 15.945 kb on + strand, within EX31_RS14195at 15.947 kb on + strand, within EX31_RS14195at 15.947 kb on + strand, within EX31_RS14195at 15.947 kb on + strand, within EX31_RS14195at 15.948 kb on - strand, within EX31_RS14195at 15.948 kb on - strand, within EX31_RS14195at 15.948 kb on - strand, within EX31_RS14195at 15.948 kb on - strand, within EX31_RS14195at 15.948 kb on - strand, within EX31_RS14195at 15.993 kb on + strand, within EX31_RS14195at 15.993 kb on + strand, within EX31_RS14195at 15.993 kb on + strand, within EX31_RS14195at 15.994 kb on - strand, within EX31_RS14195at 15.994 kb on - strand, within EX31_RS14195at 15.994 kb on - strand, within EX31_RS14195at 15.994 kb on - strand, within EX31_RS14195at 15.994 kb on - strand, within EX31_RS14195at 15.994 kb on - strand, within EX31_RS14195at 16.152 kb on - strand, within EX31_RS14195at 16.152 kb on - strand, within EX31_RS14195at 16.183 kb on + strand, within EX31_RS14195at 16.184 kb on - strand, within EX31_RS14195at 16.184 kb on - strand, within EX31_RS14195at 16.184 kb on - strand, within EX31_RS14195at 16.184 kb on - strand, within EX31_RS14195at 16.199 kb on + strand, within EX31_RS14195at 16.215 kb on + strand, within EX31_RS14195at 16.215 kb on + strand, within EX31_RS14195at 16.263 kb on + strand, within EX31_RS14195at 16.263 kb on + strand, within EX31_RS14195at 16.263 kb on + strand, within EX31_RS14195at 16.264 kb on - strand, within EX31_RS14195at 16.264 kb on - strand, within EX31_RS14195at 16.264 kb on - strand, within EX31_RS14195at 16.264 kb on - strand, within EX31_RS14195at 16.265 kb on + strand, within EX31_RS14195at 16.265 kb on + strand, within EX31_RS14195at 16.265 kb on + strand, within EX31_RS14195at 16.265 kb on + strand, within EX31_RS14195at 16.265 kb on + strand, within EX31_RS14195at 16.266 kb on - strand, within EX31_RS14195at 16.266 kb on - strand, within EX31_RS14195at 16.266 kb on - strand, within EX31_RS14195at 16.266 kb on - strand, within EX31_RS14195at 16.266 kb on - strand, within EX31_RS14195at 16.266 kb on - strand, within EX31_RS14195at 16.266 kb on - strand, within EX31_RS14195at 16.266 kb on - strand, within EX31_RS14195at 16.266 kb on - strand, within EX31_RS14195at 16.292 kb on + strand, within EX31_RS14195at 16.292 kb on + strand, within EX31_RS14195at 16.292 kb on + strand, within EX31_RS14195at 16.293 kb on - strand, within EX31_RS14195at 16.293 kb on - strand, within EX31_RS14195at 16.293 kb on - strand, within EX31_RS14195

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); RCH2 media; no shaking
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13,427 + -3.3
13,444 + -4.2
13,444 + -3.6
13,445 - -0.5
13,445 - -0.7
13,445 - -1.4
13,445 - -2.3
13,445 - -1.8
13,445 - -1.9
13,445 - -1.1
13,466 + -2.7
13,466 + +1.3
13,491 + -4.6
13,501 + -3.5
13,501 + -4.4
13,501 + -2.6
13,501 + -2.7
13,501 + -1.9
13,501 + -4.6
13,501 + -6.1
13,501 + -3.5
13,502 - -3.9
13,502 - -3.5
13,502 - -3.9
13,502 - -1.4
13,502 - -2.3
13,502 - -2.3
13,502 - -3.5
13,502 - -3.1
13,567 + -3.5
13,567 + -4.6
13,568 - EX31_RS14185 0.10 -2.2
13,639 + EX31_RS14185 0.19 -3.2
13,640 - EX31_RS14185 0.19 -1.8
13,640 - EX31_RS14185 0.19 -2.8
13,640 - EX31_RS14185 0.19 -2.8
13,642 + EX31_RS14185 0.20 -2.1
13,642 + EX31_RS14185 0.20 -1.6
13,642 + EX31_RS14185 0.20 -0.3
13,642 + EX31_RS14185 0.20 -2.6
13,642 + EX31_RS14185 0.20 -2.6
13,690 + EX31_RS14185 0.26 -4.0
13,690 + EX31_RS14185 0.26 -4.5
13,690 + EX31_RS14185 0.26 -1.8
13,845 + EX31_RS14185 0.46 -2.5
13,845 + EX31_RS14185 0.46 -3.3
13,846 - EX31_RS14185 0.46 -3.2
13,867 + EX31_RS14185 0.49 -2.0
13,868 - EX31_RS14185 0.49 -3.2
14,041 + EX31_RS14185 0.71 -3.4
14,042 - EX31_RS14185 0.71 -4.1
14,166 + EX31_RS14185 0.87 -1.8
14,166 + EX31_RS14185 0.87 -3.6
14,166 + EX31_RS14185 0.87 -2.4
14,167 - EX31_RS14185 0.87 -3.6
14,178 + EX31_RS14185 0.89 -2.4
14,178 + EX31_RS14185 0.89 -4.5
14,178 + EX31_RS14185 0.89 -2.3
14,240 + -6.0
14,240 + -3.4
14,240 + -2.1
14,241 - -3.0
14,247 - -5.6
14,263 + -4.6
14,263 + -4.1
14,263 + -3.8
14,264 - -3.6
14,264 - -2.3
14,264 - -5.3
14,264 - -2.0
14,264 - -3.8
14,264 - -4.1
14,295 + -4.1
14,296 - -1.9
14,299 + -1.4
14,299 + -2.8
14,299 + -0.7
14,300 - -0.3
14,300 - -0.3
14,302 + -4.2
14,302 + -3.0
14,303 - -0.3
14,303 - +0.6
14,308 + -2.0
14,308 + -3.8
14,308 + -3.0
14,309 - -1.9
14,309 - -1.5
14,309 - -1.7
14,309 - -2.9
14,310 + -2.3
14,310 + -3.9
14,310 + -4.8
14,311 - -1.3
14,311 - -2.5
14,311 - -1.0
14,311 - -1.5
14,314 + -2.4
14,314 + -2.5
14,314 + -3.8
14,319 + -2.7
14,319 + -0.9
14,320 - -0.7
14,324 + -4.8
14,325 - -0.9
14,325 - -1.1
14,325 - -0.4
14,325 - +0.7
14,325 - -0.5
14,325 - -0.6
14,325 - +0.7
14,346 - -0.6
14,469 + -2.9
14,470 - -2.9
14,478 + -3.1
14,582 + EX31_RS14190 0.19 -3.7
14,583 - EX31_RS14190 0.19 -3.5
14,610 - EX31_RS14190 0.21 -3.7
14,616 + EX31_RS14190 0.22 -3.2
14,617 - EX31_RS14190 0.22 -3.5
14,674 - EX31_RS14190 0.28 -3.6
14,674 - EX31_RS14190 0.28 -5.0
14,674 - EX31_RS14190 0.28 -3.3
14,674 - EX31_RS14190 0.28 -3.1
14,781 - EX31_RS14190 0.38 -2.3
14,781 - EX31_RS14190 0.38 -3.4
14,781 - EX31_RS14190 0.38 -4.1
14,841 + EX31_RS14190 0.44 -3.2
14,911 - EX31_RS14190 0.51 -1.8
14,911 - EX31_RS14190 0.51 -4.5
14,971 + EX31_RS14190 0.57 -2.1
14,972 - EX31_RS14190 0.57 -3.2
14,972 - EX31_RS14190 0.57 -4.3
14,972 - EX31_RS14190 0.57 -4.1
15,002 + EX31_RS14190 0.60 -2.6
15,048 - EX31_RS14190 0.65 -3.2
15,059 + EX31_RS14190 0.66 -2.7
15,059 + EX31_RS14190 0.66 -3.9
15,059 + EX31_RS14190 0.66 -3.7
15,059 + EX31_RS14190 0.66 -3.2
15,060 - EX31_RS14190 0.66 -2.6
15,060 - EX31_RS14190 0.66 -2.3
15,060 - EX31_RS14190 0.66 -3.2
15,094 + EX31_RS14190 0.70 -3.1
15,094 + EX31_RS14190 0.70 -3.5
15,095 - EX31_RS14190 0.70 -3.6
15,095 - EX31_RS14190 0.70 -3.2
15,095 - EX31_RS14190 0.70 -3.4
15,106 + EX31_RS14190 0.71 -4.2
15,107 - EX31_RS14190 0.71 -3.2
15,173 - EX31_RS14190 0.77 -2.6
15,173 - EX31_RS14190 0.77 -3.3
15,245 - EX31_RS14190 0.85 -3.1
15,268 + EX31_RS14190 0.87 -3.5
15,268 + EX31_RS14190 0.87 -2.9
15,321 + -2.8
15,321 + -4.3
15,321 + -4.6
15,321 + -5.5
15,321 + -1.9
15,321 + -0.3
15,321 + -0.5
15,321 + -3.2
15,321 + -0.4
15,321 + -3.4
15,321 + -1.9
15,321 + -3.1
15,321 + -2.3
15,321 + -3.5
15,321 + -2.1
15,321 + -4.2
15,322 - -3.7
15,322 - -3.2
15,322 - -3.1
15,322 - -3.1
15,322 - -3.0
15,322 - -4.6
15,322 - -3.1
15,322 - -3.5
15,322 - -4.2
15,322 - -2.9
15,322 - -3.4
15,342 - -3.0
15,342 - -3.3
15,366 - -3.9
15,390 + -2.1
15,390 + -3.2
15,390 + -2.4
15,390 + -3.7
15,391 - -2.5
15,391 - -2.6
15,394 + -2.2
15,394 + -3.5
15,394 + -3.2
15,395 - -1.5
15,395 - -4.0
15,395 - -2.8
15,395 - -4.5
15,399 + -2.6
15,400 - -2.7
15,400 - -2.4
15,400 - -2.7
15,472 + -2.3
15,513 + -1.9
15,522 + -1.2
15,523 - -0.1
15,523 - -0.4
15,523 - -0.5
15,523 - -2.3
15,550 + -0.9
15,551 - -0.9
15,551 - -0.1
15,560 + -0.7
15,560 + +0.1
15,561 - -0.6
15,580 + -0.6
15,650 - -0.9
15,650 - -0.7
15,673 + EX31_RS14195 0.12 -1.5
15,674 - EX31_RS14195 0.12 -0.8
15,674 - EX31_RS14195 0.12 -0.0
15,674 - EX31_RS14195 0.12 -0.7
15,674 - EX31_RS14195 0.12 -0.7
15,777 - EX31_RS14195 0.21 -1.1
15,845 + EX31_RS14195 0.27 -0.9
15,846 - EX31_RS14195 0.27 -1.7
15,846 - EX31_RS14195 0.27 -0.9
15,852 + EX31_RS14195 0.27 -0.5
15,852 + EX31_RS14195 0.27 -2.0
15,852 + EX31_RS14195 0.27 -1.2
15,852 + EX31_RS14195 0.27 -0.6
15,852 + EX31_RS14195 0.27 -2.9
15,853 - EX31_RS14195 0.27 +0.1
15,853 - EX31_RS14195 0.27 -0.8
15,936 - EX31_RS14195 0.35 -1.3
15,945 + EX31_RS14195 0.35 -1.6
15,947 + EX31_RS14195 0.36 -1.5
15,947 + EX31_RS14195 0.36 -0.2
15,947 + EX31_RS14195 0.36 -1.2
15,948 - EX31_RS14195 0.36 -0.7
15,948 - EX31_RS14195 0.36 -1.2
15,948 - EX31_RS14195 0.36 -0.8
15,948 - EX31_RS14195 0.36 -0.6
15,948 - EX31_RS14195 0.36 -0.5
15,993 + EX31_RS14195 0.40 -1.8
15,993 + EX31_RS14195 0.40 -1.9
15,993 + EX31_RS14195 0.40 -1.3
15,994 - EX31_RS14195 0.40 -1.0
15,994 - EX31_RS14195 0.40 -1.7
15,994 - EX31_RS14195 0.40 -0.8
15,994 - EX31_RS14195 0.40 -0.3
15,994 - EX31_RS14195 0.40 -0.5
15,994 - EX31_RS14195 0.40 -1.0
16,152 - EX31_RS14195 0.53 -0.5
16,152 - EX31_RS14195 0.53 +0.4
16,183 + EX31_RS14195 0.56 -1.3
16,184 - EX31_RS14195 0.56 -1.1
16,184 - EX31_RS14195 0.56 +0.3
16,184 - EX31_RS14195 0.56 -0.5
16,184 - EX31_RS14195 0.56 -0.6
16,199 + EX31_RS14195 0.57 -0.2
16,215 + EX31_RS14195 0.59 -0.5
16,215 + EX31_RS14195 0.59 -0.8
16,263 + EX31_RS14195 0.63 -0.5
16,263 + EX31_RS14195 0.63 -1.4
16,263 + EX31_RS14195 0.63 -1.7
16,264 - EX31_RS14195 0.63 +0.1
16,264 - EX31_RS14195 0.63 -0.7
16,264 - EX31_RS14195 0.63 -0.7
16,264 - EX31_RS14195 0.63 +0.1
16,265 + EX31_RS14195 0.63 +0.3
16,265 + EX31_RS14195 0.63 -0.9
16,265 + EX31_RS14195 0.63 -2.6
16,265 + EX31_RS14195 0.63 -0.5
16,265 + EX31_RS14195 0.63 -1.8
16,266 - EX31_RS14195 0.63 -2.3
16,266 - EX31_RS14195 0.63 +0.4
16,266 - EX31_RS14195 0.63 -1.4
16,266 - EX31_RS14195 0.63 +1.5
16,266 - EX31_RS14195 0.63 -1.5
16,266 - EX31_RS14195 0.63 -2.9
16,266 - EX31_RS14195 0.63 -0.6
16,266 - EX31_RS14195 0.63 -0.1
16,266 - EX31_RS14195 0.63 -1.0
16,292 + EX31_RS14195 0.66 -0.7
16,292 + EX31_RS14195 0.66 -1.6
16,292 + EX31_RS14195 0.66 -1.9
16,293 - EX31_RS14195 0.66 -1.8
16,293 - EX31_RS14195 0.66 -1.5
16,293 - EX31_RS14195 0.66 -1.0

Or see this region's nucleotide sequence