Strain Fitness in Rahnella sp. WP5 around EX31_RS13280

Experiment: L-Glutamine (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS13275 and EX31_RS13280 are separated by 134 nucleotidesEX31_RS13280 and EX31_RS13285 are separated by 62 nucleotides EX31_RS13275: EX31_RS13275 - diaminopimelate decarboxylase, at 82,689 to 83,948 _RS13275 EX31_RS13280: EX31_RS13280 - LysR family transcriptional regulator, at 84,083 to 85,006 _RS13280 EX31_RS13285: EX31_RS13285 - MFS transporter, at 85,069 to 86,232 _RS13285 Position (kb) 84 85 86Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 83.219 kb on - strand, within EX31_RS13275at 83.219 kb on - strand, within EX31_RS13275at 83.357 kb on - strand, within EX31_RS13275at 83.357 kb on - strand, within EX31_RS13275at 83.357 kb on - strand, within EX31_RS13275at 83.382 kb on - strand, within EX31_RS13275at 83.382 kb on - strand, within EX31_RS13275at 83.481 kb on - strand, within EX31_RS13275at 83.481 kb on - strand, within EX31_RS13275at 83.601 kb on - strand, within EX31_RS13275at 83.601 kb on - strand, within EX31_RS13275at 83.652 kb on - strand, within EX31_RS13275at 83.652 kb on - strand, within EX31_RS13275at 83.775 kb on - strand, within EX31_RS13275at 83.778 kb on - strand, within EX31_RS13275at 83.778 kb on - strand, within EX31_RS13275at 83.778 kb on - strand, within EX31_RS13275at 83.778 kb on - strand, within EX31_RS13275at 83.778 kb on - strand, within EX31_RS13275at 83.778 kb on - strand, within EX31_RS13275at 83.778 kb on - strand, within EX31_RS13275at 83.778 kb on - strand, within EX31_RS13275at 83.858 kb on - strandat 83.928 kb on - strandat 83.928 kb on - strandat 83.928 kb on - strandat 83.949 kb on - strandat 83.949 kb on - strandat 83.977 kb on + strandat 83.977 kb on + strandat 83.977 kb on + strandat 83.977 kb on + strandat 83.978 kb on - strandat 83.989 kb on + strandat 83.989 kb on + strandat 83.990 kb on - strandat 84.021 kb on + strandat 84.044 kb on + strandat 84.092 kb on - strandat 84.092 kb on - strandat 84.092 kb on - strandat 84.169 kb on + strandat 84.169 kb on + strandat 84.255 kb on + strand, within EX31_RS13280at 84.255 kb on + strand, within EX31_RS13280at 84.255 kb on + strand, within EX31_RS13280at 84.255 kb on + strand, within EX31_RS13280at 84.255 kb on + strand, within EX31_RS13280at 84.255 kb on + strand, within EX31_RS13280at 84.255 kb on + strand, within EX31_RS13280at 84.255 kb on + strand, within EX31_RS13280at 84.255 kb on + strand, within EX31_RS13280at 84.255 kb on + strand, within EX31_RS13280at 84.255 kb on + strand, within EX31_RS13280at 84.255 kb on + strand, within EX31_RS13280at 84.256 kb on - strand, within EX31_RS13280at 84.256 kb on - strand, within EX31_RS13280at 84.256 kb on - strand, within EX31_RS13280at 84.257 kb on + strand, within EX31_RS13280at 84.257 kb on + strand, within EX31_RS13280at 84.257 kb on + strand, within EX31_RS13280at 84.257 kb on + strand, within EX31_RS13280at 84.257 kb on + strand, within EX31_RS13280at 84.258 kb on - strand, within EX31_RS13280at 84.258 kb on - strand, within EX31_RS13280at 84.258 kb on - strand, within EX31_RS13280at 84.262 kb on + strand, within EX31_RS13280at 84.262 kb on + strand, within EX31_RS13280at 84.263 kb on - strand, within EX31_RS13280at 84.295 kb on - strand, within EX31_RS13280at 84.305 kb on + strand, within EX31_RS13280at 84.306 kb on - strand, within EX31_RS13280at 84.309 kb on - strand, within EX31_RS13280at 84.325 kb on + strand, within EX31_RS13280at 84.326 kb on - strand, within EX31_RS13280at 84.326 kb on - strand, within EX31_RS13280at 84.421 kb on + strand, within EX31_RS13280at 84.421 kb on + strand, within EX31_RS13280at 84.421 kb on + strand, within EX31_RS13280at 84.421 kb on + strand, within EX31_RS13280at 84.421 kb on + strand, within EX31_RS13280at 84.422 kb on - strand, within EX31_RS13280at 84.422 kb on - strand, within EX31_RS13280at 84.422 kb on - strand, within EX31_RS13280at 84.460 kb on + strand, within EX31_RS13280at 84.460 kb on + strand, within EX31_RS13280at 84.461 kb on - strand, within EX31_RS13280at 84.659 kb on - strand, within EX31_RS13280at 84.662 kb on + strand, within EX31_RS13280at 84.662 kb on + strand, within EX31_RS13280at 84.662 kb on + strand, within EX31_RS13280at 84.662 kb on + strand, within EX31_RS13280at 84.662 kb on + strand, within EX31_RS13280at 84.662 kb on + strand, within EX31_RS13280at 84.662 kb on + strand, within EX31_RS13280at 84.663 kb on - strand, within EX31_RS13280at 84.663 kb on - strand, within EX31_RS13280at 84.663 kb on - strand, within EX31_RS13280at 84.663 kb on - strand, within EX31_RS13280at 84.663 kb on - strand, within EX31_RS13280at 84.663 kb on - strand, within EX31_RS13280at 84.663 kb on - strand, within EX31_RS13280at 84.663 kb on - strand, within EX31_RS13280at 84.664 kb on + strand, within EX31_RS13280at 84.664 kb on + strand, within EX31_RS13280at 84.664 kb on + strand, within EX31_RS13280at 84.664 kb on + strand, within EX31_RS13280at 84.665 kb on - strand, within EX31_RS13280at 84.665 kb on - strand, within EX31_RS13280at 84.706 kb on + strand, within EX31_RS13280at 84.707 kb on - strand, within EX31_RS13280at 84.711 kb on + strand, within EX31_RS13280at 84.711 kb on + strand, within EX31_RS13280at 84.711 kb on + strand, within EX31_RS13280at 84.712 kb on - strand, within EX31_RS13280at 84.712 kb on - strand, within EX31_RS13280at 84.715 kb on + strand, within EX31_RS13280at 84.716 kb on - strand, within EX31_RS13280at 84.716 kb on - strand, within EX31_RS13280at 84.778 kb on + strand, within EX31_RS13280at 84.779 kb on - strand, within EX31_RS13280at 85.050 kb on - strandat 85.050 kb on - strandat 85.287 kb on - strand, within EX31_RS13285at 85.287 kb on - strand, within EX31_RS13285at 85.300 kb on - strand, within EX31_RS13285at 85.344 kb on + strand, within EX31_RS13285at 85.385 kb on + strand, within EX31_RS13285at 85.386 kb on - strand, within EX31_RS13285at 85.386 kb on - strand, within EX31_RS13285at 85.405 kb on + strand, within EX31_RS13285at 85.441 kb on - strand, within EX31_RS13285at 85.441 kb on - strand, within EX31_RS13285at 85.546 kb on - strand, within EX31_RS13285at 85.570 kb on - strand, within EX31_RS13285at 85.571 kb on + strand, within EX31_RS13285at 85.571 kb on + strand, within EX31_RS13285at 85.571 kb on + strand, within EX31_RS13285at 85.571 kb on + strand, within EX31_RS13285at 85.571 kb on + strand, within EX31_RS13285at 85.571 kb on + strand, within EX31_RS13285at 85.571 kb on + strand, within EX31_RS13285at 85.571 kb on + strand, within EX31_RS13285at 85.571 kb on + strand, within EX31_RS13285at 85.571 kb on + strand, within EX31_RS13285at 85.571 kb on + strand, within EX31_RS13285at 85.571 kb on + strand, within EX31_RS13285at 85.571 kb on + strand, within EX31_RS13285at 85.572 kb on - strand, within EX31_RS13285at 85.572 kb on - strand, within EX31_RS13285at 85.572 kb on - strand, within EX31_RS13285at 85.572 kb on - strand, within EX31_RS13285at 85.572 kb on - strand, within EX31_RS13285at 85.572 kb on - strand, within EX31_RS13285at 85.572 kb on - strand, within EX31_RS13285at 85.572 kb on - strand, within EX31_RS13285at 85.572 kb on - strand, within EX31_RS13285at 85.572 kb on - strand, within EX31_RS13285at 85.572 kb on - strand, within EX31_RS13285at 85.608 kb on + strand, within EX31_RS13285at 85.609 kb on - strand, within EX31_RS13285at 85.609 kb on - strand, within EX31_RS13285at 85.631 kb on - strand, within EX31_RS13285at 85.631 kb on - strand, within EX31_RS13285at 85.631 kb on - strand, within EX31_RS13285at 85.707 kb on + strand, within EX31_RS13285at 85.707 kb on + strand, within EX31_RS13285at 85.710 kb on - strand, within EX31_RS13285at 85.867 kb on - strand, within EX31_RS13285at 85.936 kb on + strand, within EX31_RS13285at 85.961 kb on + strand, within EX31_RS13285at 85.962 kb on - strand, within EX31_RS13285at 85.967 kb on + strand, within EX31_RS13285at 85.967 kb on + strand, within EX31_RS13285at 85.998 kb on + strand, within EX31_RS13285at 85.998 kb on + strand, within EX31_RS13285at 85.998 kb on + strand, within EX31_RS13285at 85.998 kb on + strand, within EX31_RS13285at 85.999 kb on - strand, within EX31_RS13285at 85.999 kb on - strand, within EX31_RS13285

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); RCH2 media; no shaking
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83,219 - EX31_RS13275 0.42 -2.8
83,219 - EX31_RS13275 0.42 -3.8
83,357 - EX31_RS13275 0.53 -1.8
83,357 - EX31_RS13275 0.53 -3.6
83,357 - EX31_RS13275 0.53 -3.4
83,382 - EX31_RS13275 0.55 -2.3
83,382 - EX31_RS13275 0.55 -1.4
83,481 - EX31_RS13275 0.63 -4.2
83,481 - EX31_RS13275 0.63 -2.6
83,601 - EX31_RS13275 0.72 -1.7
83,601 - EX31_RS13275 0.72 -2.9
83,652 - EX31_RS13275 0.76 -2.3
83,652 - EX31_RS13275 0.76 -3.7
83,775 - EX31_RS13275 0.86 -4.8
83,778 - EX31_RS13275 0.86 -4.2
83,778 - EX31_RS13275 0.86 -3.7
83,778 - EX31_RS13275 0.86 -1.8
83,778 - EX31_RS13275 0.86 -3.3
83,778 - EX31_RS13275 0.86 -3.1
83,778 - EX31_RS13275 0.86 -2.3
83,778 - EX31_RS13275 0.86 -3.7
83,778 - EX31_RS13275 0.86 -0.5
83,858 - -3.5
83,928 - -4.7
83,928 - -5.4
83,928 - -3.3
83,949 - -3.4
83,949 - -1.8
83,977 + -2.1
83,977 + -3.3
83,977 + -3.1
83,977 + -1.6
83,978 - +0.4
83,989 + -2.7
83,989 + -1.4
83,990 - -0.9
84,021 + -5.0
84,044 + -1.5
84,092 - +2.1
84,092 - -0.3
84,092 - +0.4
84,169 + -2.6
84,169 + -1.2
84,255 + EX31_RS13280 0.19 -2.1
84,255 + EX31_RS13280 0.19 -1.6
84,255 + EX31_RS13280 0.19 -1.3
84,255 + EX31_RS13280 0.19 -2.1
84,255 + EX31_RS13280 0.19 -0.7
84,255 + EX31_RS13280 0.19 -1.3
84,255 + EX31_RS13280 0.19 -2.2
84,255 + EX31_RS13280 0.19 -1.1
84,255 + EX31_RS13280 0.19 +2.1
84,255 + EX31_RS13280 0.19 -1.3
84,255 + EX31_RS13280 0.19 -2.1
84,255 + EX31_RS13280 0.19 -0.9
84,256 - EX31_RS13280 0.19 +0.2
84,256 - EX31_RS13280 0.19 +0.1
84,256 - EX31_RS13280 0.19 -0.1
84,257 + EX31_RS13280 0.19 -1.0
84,257 + EX31_RS13280 0.19 -1.6
84,257 + EX31_RS13280 0.19 -1.7
84,257 + EX31_RS13280 0.19 -1.1
84,257 + EX31_RS13280 0.19 -0.5
84,258 - EX31_RS13280 0.19 -0.6
84,258 - EX31_RS13280 0.19 +1.1
84,258 - EX31_RS13280 0.19 +1.1
84,262 + EX31_RS13280 0.19 -2.5
84,262 + EX31_RS13280 0.19 -1.9
84,263 - EX31_RS13280 0.19 +0.5
84,295 - EX31_RS13280 0.23 -0.5
84,305 + EX31_RS13280 0.24 -1.0
84,306 - EX31_RS13280 0.24 +0.5
84,309 - EX31_RS13280 0.24 -0.1
84,325 + EX31_RS13280 0.26 -0.9
84,326 - EX31_RS13280 0.26 +0.2
84,326 - EX31_RS13280 0.26 -0.4
84,421 + EX31_RS13280 0.37 -1.9
84,421 + EX31_RS13280 0.37 -0.5
84,421 + EX31_RS13280 0.37 -1.3
84,421 + EX31_RS13280 0.37 -0.7
84,421 + EX31_RS13280 0.37 -2.6
84,422 - EX31_RS13280 0.37 -2.6
84,422 - EX31_RS13280 0.37 -1.6
84,422 - EX31_RS13280 0.37 -1.1
84,460 + EX31_RS13280 0.41 -2.6
84,460 + EX31_RS13280 0.41 -1.6
84,461 - EX31_RS13280 0.41 -1.0
84,659 - EX31_RS13280 0.62 -0.1
84,662 + EX31_RS13280 0.63 -1.6
84,662 + EX31_RS13280 0.63 -0.7
84,662 + EX31_RS13280 0.63 -3.5
84,662 + EX31_RS13280 0.63 -2.1
84,662 + EX31_RS13280 0.63 -3.0
84,662 + EX31_RS13280 0.63 +1.1
84,662 + EX31_RS13280 0.63 -3.6
84,663 - EX31_RS13280 0.63 -1.3
84,663 - EX31_RS13280 0.63 -0.4
84,663 - EX31_RS13280 0.63 -0.3
84,663 - EX31_RS13280 0.63 +0.1
84,663 - EX31_RS13280 0.63 -2.5
84,663 - EX31_RS13280 0.63 -0.5
84,663 - EX31_RS13280 0.63 +1.1
84,663 - EX31_RS13280 0.63 -1.3
84,664 + EX31_RS13280 0.63 -2.4
84,664 + EX31_RS13280 0.63 -1.5
84,664 + EX31_RS13280 0.63 -2.4
84,664 + EX31_RS13280 0.63 -1.1
84,665 - EX31_RS13280 0.63 -1.8
84,665 - EX31_RS13280 0.63 +0.1
84,706 + EX31_RS13280 0.67 -2.2
84,707 - EX31_RS13280 0.68 -1.4
84,711 + EX31_RS13280 0.68 -3.3
84,711 + EX31_RS13280 0.68 -1.8
84,711 + EX31_RS13280 0.68 -0.8
84,712 - EX31_RS13280 0.68 -1.5
84,712 - EX31_RS13280 0.68 +0.1
84,715 + EX31_RS13280 0.68 -1.3
84,716 - EX31_RS13280 0.69 -1.2
84,716 - EX31_RS13280 0.69 -2.5
84,778 + EX31_RS13280 0.75 -0.9
84,779 - EX31_RS13280 0.75 -1.6
85,050 - +0.9
85,050 - +0.4
85,287 - EX31_RS13285 0.19 -0.7
85,287 - EX31_RS13285 0.19 +0.0
85,300 - EX31_RS13285 0.20 +0.1
85,344 + EX31_RS13285 0.24 +0.7
85,385 + EX31_RS13285 0.27 +0.4
85,386 - EX31_RS13285 0.27 +1.4
85,386 - EX31_RS13285 0.27 +0.0
85,405 + EX31_RS13285 0.29 -0.0
85,441 - EX31_RS13285 0.32 +0.3
85,441 - EX31_RS13285 0.32 +0.9
85,546 - EX31_RS13285 0.41 -0.5
85,570 - EX31_RS13285 0.43 -0.0
85,571 + EX31_RS13285 0.43 +1.3
85,571 + EX31_RS13285 0.43 +0.5
85,571 + EX31_RS13285 0.43 -0.3
85,571 + EX31_RS13285 0.43 -0.9
85,571 + EX31_RS13285 0.43 +0.9
85,571 + EX31_RS13285 0.43 -2.3
85,571 + EX31_RS13285 0.43 -0.3
85,571 + EX31_RS13285 0.43 -0.5
85,571 + EX31_RS13285 0.43 -0.2
85,571 + EX31_RS13285 0.43 +0.5
85,571 + EX31_RS13285 0.43 +1.4
85,571 + EX31_RS13285 0.43 +0.6
85,571 + EX31_RS13285 0.43 -0.7
85,572 - EX31_RS13285 0.43 +0.3
85,572 - EX31_RS13285 0.43 -0.3
85,572 - EX31_RS13285 0.43 -1.7
85,572 - EX31_RS13285 0.43 -1.0
85,572 - EX31_RS13285 0.43 +0.0
85,572 - EX31_RS13285 0.43 -1.0
85,572 - EX31_RS13285 0.43 -0.3
85,572 - EX31_RS13285 0.43 -1.0
85,572 - EX31_RS13285 0.43 +0.7
85,572 - EX31_RS13285 0.43 -0.6
85,572 - EX31_RS13285 0.43 -0.6
85,608 + EX31_RS13285 0.46 -0.7
85,609 - EX31_RS13285 0.46 -0.5
85,609 - EX31_RS13285 0.46 -1.4
85,631 - EX31_RS13285 0.48 -0.3
85,631 - EX31_RS13285 0.48 +0.2
85,631 - EX31_RS13285 0.48 +1.8
85,707 + EX31_RS13285 0.55 +0.3
85,707 + EX31_RS13285 0.55 +0.1
85,710 - EX31_RS13285 0.55 +0.9
85,867 - EX31_RS13285 0.69 +0.8
85,936 + EX31_RS13285 0.74 +0.0
85,961 + EX31_RS13285 0.77 +0.2
85,962 - EX31_RS13285 0.77 +0.6
85,967 + EX31_RS13285 0.77 -0.3
85,967 + EX31_RS13285 0.77 -0.3
85,998 + EX31_RS13285 0.80 +0.9
85,998 + EX31_RS13285 0.80 +0.4
85,998 + EX31_RS13285 0.80 -0.7
85,998 + EX31_RS13285 0.80 -0.3
85,999 - EX31_RS13285 0.80 -0.5
85,999 - EX31_RS13285 0.80 +0.7

Or see this region's nucleotide sequence