Strain Fitness in Rahnella sp. WP5 around EX31_RS12875

Experiment: L-Glutamine (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS12875 and EX31_RS12880 are separated by 179 nucleotides EX31_RS12875: EX31_RS12875 - D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase, at 361 to 927 _RS12875 EX31_RS12880: EX31_RS12880 - methionine ABC transporter ATP-binding protein MetN, at 1,107 to 2,138 _RS12880 Position (kb) 0 1Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 0.287 kb on + strandat 0.287 kb on + strandat 0.287 kb on + strandat 0.287 kb on + strandat 0.320 kb on + strandat 0.321 kb on - strandat 0.321 kb on - strandat 0.321 kb on - strandat 0.329 kb on - strandat 0.329 kb on - strandat 0.380 kb on - strandat 0.380 kb on - strandat 0.381 kb on + strandat 0.413 kb on - strandat 0.475 kb on - strand, within EX31_RS12875at 0.508 kb on - strand, within EX31_RS12875at 0.532 kb on - strand, within EX31_RS12875at 0.532 kb on - strand, within EX31_RS12875at 0.533 kb on + strand, within EX31_RS12875at 0.660 kb on - strand, within EX31_RS12875at 0.755 kb on - strand, within EX31_RS12875at 0.860 kb on - strand, within EX31_RS12875at 0.860 kb on - strand, within EX31_RS12875at 0.863 kb on + strand, within EX31_RS12875at 0.864 kb on - strand, within EX31_RS12875at 0.962 kb on + strandat 1.064 kb on + strandat 1.065 kb on - strandat 1.106 kb on + strandat 1.106 kb on + strandat 1.106 kb on + strandat 1.113 kb on - strandat 1.113 kb on - strandat 1.113 kb on - strandat 1.121 kb on + strandat 1.121 kb on + strandat 1.121 kb on + strandat 1.246 kb on + strand, within EX31_RS12880at 1.246 kb on + strand, within EX31_RS12880at 1.246 kb on + strand, within EX31_RS12880at 1.246 kb on + strand, within EX31_RS12880at 1.246 kb on + strand, within EX31_RS12880at 1.247 kb on - strand, within EX31_RS12880at 1.247 kb on - strand, within EX31_RS12880at 1.249 kb on + strand, within EX31_RS12880at 1.249 kb on + strand, within EX31_RS12880at 1.249 kb on + strand, within EX31_RS12880at 1.250 kb on - strand, within EX31_RS12880at 1.280 kb on + strand, within EX31_RS12880at 1.379 kb on + strand, within EX31_RS12880at 1.457 kb on + strand, within EX31_RS12880at 1.457 kb on + strand, within EX31_RS12880at 1.457 kb on + strand, within EX31_RS12880at 1.457 kb on + strand, within EX31_RS12880at 1.457 kb on + strand, within EX31_RS12880at 1.458 kb on - strand, within EX31_RS12880at 1.502 kb on + strand, within EX31_RS12880at 1.502 kb on + strand, within EX31_RS12880at 1.502 kb on + strand, within EX31_RS12880at 1.503 kb on - strand, within EX31_RS12880at 1.503 kb on - strand, within EX31_RS12880at 1.503 kb on - strand, within EX31_RS12880at 1.553 kb on - strand, within EX31_RS12880at 1.588 kb on + strand, within EX31_RS12880at 1.588 kb on + strand, within EX31_RS12880at 1.588 kb on + strand, within EX31_RS12880at 1.588 kb on + strand, within EX31_RS12880at 1.589 kb on - strand, within EX31_RS12880at 1.589 kb on - strand, within EX31_RS12880at 1.589 kb on - strand, within EX31_RS12880at 1.589 kb on - strand, within EX31_RS12880at 1.607 kb on + strand, within EX31_RS12880at 1.607 kb on + strand, within EX31_RS12880at 1.607 kb on + strand, within EX31_RS12880at 1.608 kb on - strand, within EX31_RS12880at 1.608 kb on - strand, within EX31_RS12880at 1.628 kb on + strand, within EX31_RS12880at 1.628 kb on + strand, within EX31_RS12880at 1.628 kb on + strand, within EX31_RS12880at 1.629 kb on - strand, within EX31_RS12880at 1.629 kb on - strand, within EX31_RS12880at 1.651 kb on + strand, within EX31_RS12880at 1.651 kb on + strand, within EX31_RS12880at 1.655 kb on - strand, within EX31_RS12880at 1.661 kb on + strand, within EX31_RS12880at 1.775 kb on + strand, within EX31_RS12880at 1.780 kb on + strand, within EX31_RS12880at 1.781 kb on - strand, within EX31_RS12880at 1.781 kb on - strand, within EX31_RS12880at 1.802 kb on + strand, within EX31_RS12880at 1.827 kb on - strand, within EX31_RS12880at 1.863 kb on + strand, within EX31_RS12880at 1.864 kb on - strand, within EX31_RS12880

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); RCH2 media; no shaking
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287 + +0.0
287 + +0.5
287 + -0.7
287 + -0.4
320 + +0.5
321 - -0.5
321 - -0.3
321 - -0.1
329 - -0.2
329 - -0.9
380 - +0.2
380 - +1.2
381 + +0.7
413 - -0.3
475 - EX31_RS12875 0.20 -1.9
508 - EX31_RS12875 0.26 +0.1
532 - EX31_RS12875 0.30 -1.8
532 - EX31_RS12875 0.30 -1.3
533 + EX31_RS12875 0.30 -0.1
660 - EX31_RS12875 0.53 -1.3
755 - EX31_RS12875 0.69 +0.7
860 - EX31_RS12875 0.88 +0.5
860 - EX31_RS12875 0.88 -0.3
863 + EX31_RS12875 0.89 +1.1
864 - EX31_RS12875 0.89 +1.1
962 + +0.6
1,064 + -0.2
1,065 - +0.8
1,106 + -3.2
1,106 + -1.3
1,106 + -0.7
1,113 - -0.4
1,113 - +0.1
1,113 - +2.2
1,121 + +0.9
1,121 + -0.2
1,121 + -0.7
1,246 + EX31_RS12880 0.13 +1.5
1,246 + EX31_RS12880 0.13 -1.1
1,246 + EX31_RS12880 0.13 +0.4
1,246 + EX31_RS12880 0.13 +1.1
1,246 + EX31_RS12880 0.13 -0.5
1,247 - EX31_RS12880 0.14 +0.5
1,247 - EX31_RS12880 0.14 +0.1
1,249 + EX31_RS12880 0.14 -0.1
1,249 + EX31_RS12880 0.14 -0.2
1,249 + EX31_RS12880 0.14 -1.6
1,250 - EX31_RS12880 0.14 -0.3
1,280 + EX31_RS12880 0.17 +0.6
1,379 + EX31_RS12880 0.26 +1.4
1,457 + EX31_RS12880 0.34 -1.4
1,457 + EX31_RS12880 0.34 +1.0
1,457 + EX31_RS12880 0.34 +0.5
1,457 + EX31_RS12880 0.34 +0.5
1,457 + EX31_RS12880 0.34 +0.2
1,458 - EX31_RS12880 0.34 -0.5
1,502 + EX31_RS12880 0.38 +0.2
1,502 + EX31_RS12880 0.38 -2.0
1,502 + EX31_RS12880 0.38 +0.8
1,503 - EX31_RS12880 0.38 -0.3
1,503 - EX31_RS12880 0.38 +1.1
1,503 - EX31_RS12880 0.38 -0.7
1,553 - EX31_RS12880 0.43 -0.4
1,588 + EX31_RS12880 0.47 -0.5
1,588 + EX31_RS12880 0.47 +0.0
1,588 + EX31_RS12880 0.47 -0.4
1,588 + EX31_RS12880 0.47 +0.8
1,589 - EX31_RS12880 0.47 +0.6
1,589 - EX31_RS12880 0.47 -0.2
1,589 - EX31_RS12880 0.47 +0.1
1,589 - EX31_RS12880 0.47 -0.3
1,607 + EX31_RS12880 0.48 -0.9
1,607 + EX31_RS12880 0.48 -2.2
1,607 + EX31_RS12880 0.48 +0.1
1,608 - EX31_RS12880 0.49 +0.1
1,608 - EX31_RS12880 0.49 +1.5
1,628 + EX31_RS12880 0.50 -0.7
1,628 + EX31_RS12880 0.50 +0.7
1,628 + EX31_RS12880 0.50 -0.0
1,629 - EX31_RS12880 0.51 +1.6
1,629 - EX31_RS12880 0.51 +0.6
1,651 + EX31_RS12880 0.53 -0.6
1,651 + EX31_RS12880 0.53 +1.5
1,655 - EX31_RS12880 0.53 +0.9
1,661 + EX31_RS12880 0.54 -0.1
1,775 + EX31_RS12880 0.65 -0.2
1,780 + EX31_RS12880 0.65 -1.5
1,781 - EX31_RS12880 0.65 +0.2
1,781 - EX31_RS12880 0.65 +0.3
1,802 + EX31_RS12880 0.67 +0.4
1,827 - EX31_RS12880 0.70 -0.1
1,863 + EX31_RS12880 0.73 +0.1
1,864 - EX31_RS12880 0.73 +1.8

Or see this region's nucleotide sequence