Strain Fitness in Rahnella sp. WP5 around EX31_RS11445

Experiment: L-Glutamine (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS11440 and EX31_RS11445 overlap by 1 nucleotidesEX31_RS11445 and EX31_RS11450 overlap by 4 nucleotides EX31_RS11440: EX31_RS11440 - histidinol dehydrogenase, at 222,021 to 223,334 _RS11440 EX31_RS11445: EX31_RS11445 - histidinol-phosphate transaminase, at 223,334 to 224,467 _RS11445 EX31_RS11450: EX31_RS11450 - bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB, at 224,464 to 225,546 _RS11450 Position (kb) 223 224 225Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 222.373 kb on + strand, within EX31_RS11440at 222.398 kb on + strand, within EX31_RS11440at 222.417 kb on + strand, within EX31_RS11440at 222.419 kb on + strand, within EX31_RS11440at 222.420 kb on - strand, within EX31_RS11440at 222.454 kb on + strand, within EX31_RS11440at 222.455 kb on - strand, within EX31_RS11440at 222.457 kb on + strand, within EX31_RS11440at 222.458 kb on - strand, within EX31_RS11440at 222.458 kb on - strand, within EX31_RS11440at 222.540 kb on + strand, within EX31_RS11440at 222.574 kb on - strand, within EX31_RS11440at 222.574 kb on - strand, within EX31_RS11440at 222.666 kb on + strand, within EX31_RS11440at 222.667 kb on - strand, within EX31_RS11440at 222.667 kb on - strand, within EX31_RS11440at 222.667 kb on - strand, within EX31_RS11440at 222.667 kb on - strand, within EX31_RS11440at 222.977 kb on + strand, within EX31_RS11440at 222.977 kb on + strand, within EX31_RS11440at 223.053 kb on - strand, within EX31_RS11440at 223.111 kb on - strand, within EX31_RS11440at 223.143 kb on + strand, within EX31_RS11440at 223.144 kb on - strand, within EX31_RS11440at 223.149 kb on + strand, within EX31_RS11440at 223.244 kb on + strandat 223.375 kb on + strandat 223.375 kb on + strandat 223.376 kb on - strandat 223.376 kb on - strandat 223.457 kb on + strand, within EX31_RS11445at 223.550 kb on + strand, within EX31_RS11445at 223.550 kb on + strand, within EX31_RS11445at 223.679 kb on + strand, within EX31_RS11445at 223.679 kb on + strand, within EX31_RS11445at 223.680 kb on - strand, within EX31_RS11445at 223.680 kb on - strand, within EX31_RS11445at 223.680 kb on - strand, within EX31_RS11445at 223.680 kb on - strand, within EX31_RS11445at 223.680 kb on - strand, within EX31_RS11445at 223.793 kb on + strand, within EX31_RS11445at 223.793 kb on + strand, within EX31_RS11445at 223.825 kb on + strand, within EX31_RS11445at 223.884 kb on + strand, within EX31_RS11445at 223.901 kb on + strand, within EX31_RS11445at 223.901 kb on + strand, within EX31_RS11445at 223.901 kb on + strand, within EX31_RS11445at 223.901 kb on + strand, within EX31_RS11445at 223.901 kb on + strand, within EX31_RS11445at 223.901 kb on + strand, within EX31_RS11445at 223.901 kb on + strand, within EX31_RS11445at 223.901 kb on + strand, within EX31_RS11445at 223.902 kb on - strand, within EX31_RS11445at 223.902 kb on - strand, within EX31_RS11445at 223.902 kb on - strand, within EX31_RS11445at 223.903 kb on + strand, within EX31_RS11445at 223.904 kb on - strand, within EX31_RS11445at 224.046 kb on + strand, within EX31_RS11445at 224.046 kb on + strand, within EX31_RS11445at 224.047 kb on - strand, within EX31_RS11445at 224.050 kb on - strand, within EX31_RS11445at 224.070 kb on - strand, within EX31_RS11445at 224.076 kb on + strand, within EX31_RS11445at 224.080 kb on + strand, within EX31_RS11445at 224.081 kb on - strand, within EX31_RS11445at 224.233 kb on + strand, within EX31_RS11445at 224.233 kb on + strand, within EX31_RS11445at 224.234 kb on - strand, within EX31_RS11445at 224.234 kb on - strand, within EX31_RS11445at 224.234 kb on - strand, within EX31_RS11445at 224.237 kb on + strand, within EX31_RS11445at 224.237 kb on + strand, within EX31_RS11445at 224.237 kb on + strand, within EX31_RS11445at 224.238 kb on - strand, within EX31_RS11445at 224.238 kb on - strand, within EX31_RS11445at 224.238 kb on - strand, within EX31_RS11445at 224.255 kb on + strand, within EX31_RS11445at 224.255 kb on + strand, within EX31_RS11445at 224.276 kb on - strand, within EX31_RS11445at 224.434 kb on + strandat 224.600 kb on + strand, within EX31_RS11450at 224.601 kb on - strand, within EX31_RS11450at 224.834 kb on + strand, within EX31_RS11450at 224.834 kb on + strand, within EX31_RS11450at 224.854 kb on + strand, within EX31_RS11450at 224.854 kb on + strand, within EX31_RS11450at 224.854 kb on + strand, within EX31_RS11450at 224.854 kb on + strand, within EX31_RS11450at 224.854 kb on + strand, within EX31_RS11450at 224.854 kb on + strand, within EX31_RS11450at 224.854 kb on + strand, within EX31_RS11450at 224.855 kb on - strand, within EX31_RS11450at 225.087 kb on + strand, within EX31_RS11450at 225.087 kb on + strand, within EX31_RS11450at 225.087 kb on + strand, within EX31_RS11450at 225.087 kb on + strand, within EX31_RS11450at 225.088 kb on - strand, within EX31_RS11450at 225.151 kb on + strand, within EX31_RS11450at 225.151 kb on + strand, within EX31_RS11450at 225.151 kb on + strand, within EX31_RS11450at 225.151 kb on + strand, within EX31_RS11450at 225.151 kb on + strand, within EX31_RS11450at 225.151 kb on + strand, within EX31_RS11450at 225.151 kb on + strand, within EX31_RS11450at 225.151 kb on + strand, within EX31_RS11450at 225.152 kb on - strand, within EX31_RS11450at 225.225 kb on + strand, within EX31_RS11450at 225.320 kb on - strand, within EX31_RS11450at 225.334 kb on - strand, within EX31_RS11450at 225.337 kb on + strand, within EX31_RS11450at 225.397 kb on + strand, within EX31_RS11450at 225.397 kb on + strand, within EX31_RS11450at 225.397 kb on + strand, within EX31_RS11450at 225.398 kb on - strand, within EX31_RS11450

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); RCH2 media; no shaking
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222,373 + EX31_RS11440 0.27 -1.8
222,398 + EX31_RS11440 0.29 -2.3
222,417 + EX31_RS11440 0.30 -2.5
222,419 + EX31_RS11440 0.30 -3.1
222,420 - EX31_RS11440 0.30 -0.9
222,454 + EX31_RS11440 0.33 +0.3
222,455 - EX31_RS11440 0.33 -1.4
222,457 + EX31_RS11440 0.33 -0.9
222,458 - EX31_RS11440 0.33 +1.9
222,458 - EX31_RS11440 0.33 -1.9
222,540 + EX31_RS11440 0.39 -2.6
222,574 - EX31_RS11440 0.42 -0.8
222,574 - EX31_RS11440 0.42 -2.1
222,666 + EX31_RS11440 0.49 -2.4
222,667 - EX31_RS11440 0.49 -2.9
222,667 - EX31_RS11440 0.49 -1.7
222,667 - EX31_RS11440 0.49 -2.6
222,667 - EX31_RS11440 0.49 -1.9
222,977 + EX31_RS11440 0.73 -0.9
222,977 + EX31_RS11440 0.73 -2.1
223,053 - EX31_RS11440 0.79 -0.7
223,111 - EX31_RS11440 0.83 -3.3
223,143 + EX31_RS11440 0.85 -1.9
223,144 - EX31_RS11440 0.85 -2.7
223,149 + EX31_RS11440 0.86 -2.3
223,244 + -2.6
223,375 + -1.6
223,375 + -2.5
223,376 - -2.0
223,376 - -2.7
223,457 + EX31_RS11445 0.11 -0.7
223,550 + EX31_RS11445 0.19 -1.0
223,550 + EX31_RS11445 0.19 -2.1
223,679 + EX31_RS11445 0.30 -2.0
223,679 + EX31_RS11445 0.30 -1.9
223,680 - EX31_RS11445 0.31 -1.4
223,680 - EX31_RS11445 0.31 +0.3
223,680 - EX31_RS11445 0.31 -3.4
223,680 - EX31_RS11445 0.31 -0.4
223,680 - EX31_RS11445 0.31 -2.0
223,793 + EX31_RS11445 0.40 -1.9
223,793 + EX31_RS11445 0.40 -1.9
223,825 + EX31_RS11445 0.43 -2.3
223,884 + EX31_RS11445 0.49 -1.1
223,901 + EX31_RS11445 0.50 -1.8
223,901 + EX31_RS11445 0.50 -1.1
223,901 + EX31_RS11445 0.50 -2.4
223,901 + EX31_RS11445 0.50 -2.8
223,901 + EX31_RS11445 0.50 -2.1
223,901 + EX31_RS11445 0.50 -0.7
223,901 + EX31_RS11445 0.50 -1.3
223,901 + EX31_RS11445 0.50 -3.7
223,902 - EX31_RS11445 0.50 -1.1
223,902 - EX31_RS11445 0.50 -1.4
223,902 - EX31_RS11445 0.50 -2.4
223,903 + EX31_RS11445 0.50 -2.4
223,904 - EX31_RS11445 0.50 -1.6
224,046 + EX31_RS11445 0.63 -2.6
224,046 + EX31_RS11445 0.63 -2.8
224,047 - EX31_RS11445 0.63 +0.3
224,050 - EX31_RS11445 0.63 -3.2
224,070 - EX31_RS11445 0.65 -2.3
224,076 + EX31_RS11445 0.65 -2.2
224,080 + EX31_RS11445 0.66 +0.9
224,081 - EX31_RS11445 0.66 -0.9
224,233 + EX31_RS11445 0.79 -2.0
224,233 + EX31_RS11445 0.79 -2.3
224,234 - EX31_RS11445 0.79 -1.3
224,234 - EX31_RS11445 0.79 -1.9
224,234 - EX31_RS11445 0.79 -2.0
224,237 + EX31_RS11445 0.80 -1.6
224,237 + EX31_RS11445 0.80 -0.9
224,237 + EX31_RS11445 0.80 +0.3
224,238 - EX31_RS11445 0.80 -0.7
224,238 - EX31_RS11445 0.80 -1.3
224,238 - EX31_RS11445 0.80 -1.4
224,255 + EX31_RS11445 0.81 -0.4
224,255 + EX31_RS11445 0.81 -1.7
224,276 - EX31_RS11445 0.83 -2.4
224,434 + -1.4
224,600 + EX31_RS11450 0.13 -3.1
224,601 - EX31_RS11450 0.13 -1.4
224,834 + EX31_RS11450 0.34 -0.4
224,834 + EX31_RS11450 0.34 -2.6
224,854 + EX31_RS11450 0.36 -0.9
224,854 + EX31_RS11450 0.36 -1.6
224,854 + EX31_RS11450 0.36 -0.9
224,854 + EX31_RS11450 0.36 -0.9
224,854 + EX31_RS11450 0.36 -1.8
224,854 + EX31_RS11450 0.36 -2.3
224,854 + EX31_RS11450 0.36 -0.7
224,855 - EX31_RS11450 0.36 -1.9
225,087 + EX31_RS11450 0.58 -0.4
225,087 + EX31_RS11450 0.58 -0.7
225,087 + EX31_RS11450 0.58 -1.8
225,087 + EX31_RS11450 0.58 +0.3
225,088 - EX31_RS11450 0.58 -2.6
225,151 + EX31_RS11450 0.63 -2.9
225,151 + EX31_RS11450 0.63 -1.1
225,151 + EX31_RS11450 0.63 -1.9
225,151 + EX31_RS11450 0.63 -1.2
225,151 + EX31_RS11450 0.63 -2.3
225,151 + EX31_RS11450 0.63 -3.3
225,151 + EX31_RS11450 0.63 -2.1
225,151 + EX31_RS11450 0.63 -0.1
225,152 - EX31_RS11450 0.64 -0.7
225,225 + EX31_RS11450 0.70 +0.3
225,320 - EX31_RS11450 0.79 -1.6
225,334 - EX31_RS11450 0.80 -2.3
225,337 + EX31_RS11450 0.81 -1.6
225,397 + EX31_RS11450 0.86 +0.3
225,397 + EX31_RS11450 0.86 -1.8
225,397 + EX31_RS11450 0.86 -2.6
225,398 - EX31_RS11450 0.86 -2.3

Or see this region's nucleotide sequence