Strain Fitness in Rahnella sp. WP5 around EX31_RS11440

Experiment: L-Glutamine (N); RCH2 media; no shaking

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS11435 and EX31_RS11440 are separated by 3 nucleotidesEX31_RS11440 and EX31_RS11445 overlap by 1 nucleotides EX31_RS11435: EX31_RS11435 - ATP phosphoribosyltransferase, at 221,118 to 222,017 _RS11435 EX31_RS11440: EX31_RS11440 - histidinol dehydrogenase, at 222,021 to 223,334 _RS11440 EX31_RS11445: EX31_RS11445 - histidinol-phosphate transaminase, at 223,334 to 224,467 _RS11445 Position (kb) 222 223 224Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 221.096 kb on + strandat 221.096 kb on + strandat 221.096 kb on + strandat 221.097 kb on - strandat 221.097 kb on - strandat 221.097 kb on - strandat 221.395 kb on - strand, within EX31_RS11435at 221.463 kb on + strand, within EX31_RS11435at 221.464 kb on - strand, within EX31_RS11435at 221.529 kb on + strand, within EX31_RS11435at 221.529 kb on + strand, within EX31_RS11435at 221.766 kb on - strand, within EX31_RS11435at 221.799 kb on + strand, within EX31_RS11435at 221.799 kb on + strand, within EX31_RS11435at 221.799 kb on + strand, within EX31_RS11435at 221.799 kb on + strand, within EX31_RS11435at 221.799 kb on + strand, within EX31_RS11435at 221.799 kb on + strand, within EX31_RS11435at 221.800 kb on - strand, within EX31_RS11435at 221.800 kb on - strand, within EX31_RS11435at 221.800 kb on - strand, within EX31_RS11435at 221.804 kb on + strand, within EX31_RS11435at 221.804 kb on + strand, within EX31_RS11435at 221.804 kb on + strand, within EX31_RS11435at 221.804 kb on + strand, within EX31_RS11435at 221.804 kb on + strand, within EX31_RS11435at 221.804 kb on + strand, within EX31_RS11435at 221.804 kb on + strand, within EX31_RS11435at 221.804 kb on + strand, within EX31_RS11435at 221.805 kb on - strand, within EX31_RS11435at 221.805 kb on - strand, within EX31_RS11435at 222.015 kb on + strandat 222.015 kb on + strandat 222.206 kb on + strand, within EX31_RS11440at 222.268 kb on + strand, within EX31_RS11440at 222.281 kb on + strand, within EX31_RS11440at 222.317 kb on + strand, within EX31_RS11440at 222.373 kb on + strand, within EX31_RS11440at 222.398 kb on + strand, within EX31_RS11440at 222.417 kb on + strand, within EX31_RS11440at 222.419 kb on + strand, within EX31_RS11440at 222.420 kb on - strand, within EX31_RS11440at 222.454 kb on + strand, within EX31_RS11440at 222.455 kb on - strand, within EX31_RS11440at 222.457 kb on + strand, within EX31_RS11440at 222.458 kb on - strand, within EX31_RS11440at 222.458 kb on - strand, within EX31_RS11440at 222.540 kb on + strand, within EX31_RS11440at 222.574 kb on - strand, within EX31_RS11440at 222.574 kb on - strand, within EX31_RS11440at 222.666 kb on + strand, within EX31_RS11440at 222.667 kb on - strand, within EX31_RS11440at 222.667 kb on - strand, within EX31_RS11440at 222.667 kb on - strand, within EX31_RS11440at 222.667 kb on - strand, within EX31_RS11440at 222.977 kb on + strand, within EX31_RS11440at 222.977 kb on + strand, within EX31_RS11440at 223.053 kb on - strand, within EX31_RS11440at 223.111 kb on - strand, within EX31_RS11440at 223.143 kb on + strand, within EX31_RS11440at 223.144 kb on - strand, within EX31_RS11440at 223.149 kb on + strand, within EX31_RS11440at 223.244 kb on + strandat 223.375 kb on + strandat 223.375 kb on + strandat 223.376 kb on - strandat 223.376 kb on - strandat 223.457 kb on + strand, within EX31_RS11445at 223.550 kb on + strand, within EX31_RS11445at 223.550 kb on + strand, within EX31_RS11445at 223.679 kb on + strand, within EX31_RS11445at 223.679 kb on + strand, within EX31_RS11445at 223.680 kb on - strand, within EX31_RS11445at 223.680 kb on - strand, within EX31_RS11445at 223.680 kb on - strand, within EX31_RS11445at 223.680 kb on - strand, within EX31_RS11445at 223.680 kb on - strand, within EX31_RS11445at 223.793 kb on + strand, within EX31_RS11445at 223.793 kb on + strand, within EX31_RS11445at 223.825 kb on + strand, within EX31_RS11445at 223.884 kb on + strand, within EX31_RS11445at 223.901 kb on + strand, within EX31_RS11445at 223.901 kb on + strand, within EX31_RS11445at 223.901 kb on + strand, within EX31_RS11445at 223.901 kb on + strand, within EX31_RS11445at 223.901 kb on + strand, within EX31_RS11445at 223.901 kb on + strand, within EX31_RS11445at 223.901 kb on + strand, within EX31_RS11445at 223.901 kb on + strand, within EX31_RS11445at 223.902 kb on - strand, within EX31_RS11445at 223.902 kb on - strand, within EX31_RS11445at 223.902 kb on - strand, within EX31_RS11445at 223.903 kb on + strand, within EX31_RS11445at 223.904 kb on - strand, within EX31_RS11445at 224.046 kb on + strand, within EX31_RS11445at 224.046 kb on + strand, within EX31_RS11445at 224.047 kb on - strand, within EX31_RS11445at 224.050 kb on - strand, within EX31_RS11445at 224.070 kb on - strand, within EX31_RS11445at 224.076 kb on + strand, within EX31_RS11445at 224.080 kb on + strand, within EX31_RS11445at 224.081 kb on - strand, within EX31_RS11445at 224.233 kb on + strand, within EX31_RS11445at 224.233 kb on + strand, within EX31_RS11445at 224.234 kb on - strand, within EX31_RS11445at 224.234 kb on - strand, within EX31_RS11445at 224.234 kb on - strand, within EX31_RS11445at 224.237 kb on + strand, within EX31_RS11445at 224.237 kb on + strand, within EX31_RS11445at 224.237 kb on + strand, within EX31_RS11445at 224.238 kb on - strand, within EX31_RS11445at 224.238 kb on - strand, within EX31_RS11445at 224.238 kb on - strand, within EX31_RS11445at 224.255 kb on + strand, within EX31_RS11445at 224.255 kb on + strand, within EX31_RS11445at 224.276 kb on - strand, within EX31_RS11445

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); RCH2 media; no shaking
remove
221,096 + +0.3
221,096 + -0.6
221,096 + +0.8
221,097 - -2.0
221,097 - -0.1
221,097 - -2.0
221,395 - EX31_RS11435 0.31 -0.7
221,463 + EX31_RS11435 0.38 -1.7
221,464 - EX31_RS11435 0.38 -0.1
221,529 + EX31_RS11435 0.46 -1.6
221,529 + EX31_RS11435 0.46 -3.1
221,766 - EX31_RS11435 0.72 -2.9
221,799 + EX31_RS11435 0.76 +0.2
221,799 + EX31_RS11435 0.76 -2.6
221,799 + EX31_RS11435 0.76 -0.7
221,799 + EX31_RS11435 0.76 -0.0
221,799 + EX31_RS11435 0.76 +0.1
221,799 + EX31_RS11435 0.76 -1.9
221,800 - EX31_RS11435 0.76 -1.1
221,800 - EX31_RS11435 0.76 -1.1
221,800 - EX31_RS11435 0.76 -3.1
221,804 + EX31_RS11435 0.76 +0.3
221,804 + EX31_RS11435 0.76 -1.8
221,804 + EX31_RS11435 0.76 -0.1
221,804 + EX31_RS11435 0.76 -2.6
221,804 + EX31_RS11435 0.76 +0.7
221,804 + EX31_RS11435 0.76 -1.1
221,804 + EX31_RS11435 0.76 +1.9
221,804 + EX31_RS11435 0.76 -1.7
221,805 - EX31_RS11435 0.76 -1.4
221,805 - EX31_RS11435 0.76 +0.9
222,015 + -1.1
222,015 + -2.3
222,206 + EX31_RS11440 0.14 -1.7
222,268 + EX31_RS11440 0.19 -1.4
222,281 + EX31_RS11440 0.20 -3.3
222,317 + EX31_RS11440 0.23 -2.5
222,373 + EX31_RS11440 0.27 -1.8
222,398 + EX31_RS11440 0.29 -2.3
222,417 + EX31_RS11440 0.30 -2.5
222,419 + EX31_RS11440 0.30 -3.1
222,420 - EX31_RS11440 0.30 -0.9
222,454 + EX31_RS11440 0.33 +0.3
222,455 - EX31_RS11440 0.33 -1.4
222,457 + EX31_RS11440 0.33 -0.9
222,458 - EX31_RS11440 0.33 +1.9
222,458 - EX31_RS11440 0.33 -1.9
222,540 + EX31_RS11440 0.39 -2.6
222,574 - EX31_RS11440 0.42 -0.8
222,574 - EX31_RS11440 0.42 -2.1
222,666 + EX31_RS11440 0.49 -2.4
222,667 - EX31_RS11440 0.49 -2.9
222,667 - EX31_RS11440 0.49 -1.7
222,667 - EX31_RS11440 0.49 -2.6
222,667 - EX31_RS11440 0.49 -1.9
222,977 + EX31_RS11440 0.73 -0.9
222,977 + EX31_RS11440 0.73 -2.1
223,053 - EX31_RS11440 0.79 -0.7
223,111 - EX31_RS11440 0.83 -3.3
223,143 + EX31_RS11440 0.85 -1.9
223,144 - EX31_RS11440 0.85 -2.7
223,149 + EX31_RS11440 0.86 -2.3
223,244 + -2.6
223,375 + -1.6
223,375 + -2.5
223,376 - -2.0
223,376 - -2.7
223,457 + EX31_RS11445 0.11 -0.7
223,550 + EX31_RS11445 0.19 -1.0
223,550 + EX31_RS11445 0.19 -2.1
223,679 + EX31_RS11445 0.30 -2.0
223,679 + EX31_RS11445 0.30 -1.9
223,680 - EX31_RS11445 0.31 -1.4
223,680 - EX31_RS11445 0.31 +0.3
223,680 - EX31_RS11445 0.31 -3.4
223,680 - EX31_RS11445 0.31 -0.4
223,680 - EX31_RS11445 0.31 -2.0
223,793 + EX31_RS11445 0.40 -1.9
223,793 + EX31_RS11445 0.40 -1.9
223,825 + EX31_RS11445 0.43 -2.3
223,884 + EX31_RS11445 0.49 -1.1
223,901 + EX31_RS11445 0.50 -1.8
223,901 + EX31_RS11445 0.50 -1.1
223,901 + EX31_RS11445 0.50 -2.4
223,901 + EX31_RS11445 0.50 -2.8
223,901 + EX31_RS11445 0.50 -2.1
223,901 + EX31_RS11445 0.50 -0.7
223,901 + EX31_RS11445 0.50 -1.3
223,901 + EX31_RS11445 0.50 -3.7
223,902 - EX31_RS11445 0.50 -1.1
223,902 - EX31_RS11445 0.50 -1.4
223,902 - EX31_RS11445 0.50 -2.4
223,903 + EX31_RS11445 0.50 -2.4
223,904 - EX31_RS11445 0.50 -1.6
224,046 + EX31_RS11445 0.63 -2.6
224,046 + EX31_RS11445 0.63 -2.8
224,047 - EX31_RS11445 0.63 +0.3
224,050 - EX31_RS11445 0.63 -3.2
224,070 - EX31_RS11445 0.65 -2.3
224,076 + EX31_RS11445 0.65 -2.2
224,080 + EX31_RS11445 0.66 +0.9
224,081 - EX31_RS11445 0.66 -0.9
224,233 + EX31_RS11445 0.79 -2.0
224,233 + EX31_RS11445 0.79 -2.3
224,234 - EX31_RS11445 0.79 -1.3
224,234 - EX31_RS11445 0.79 -1.9
224,234 - EX31_RS11445 0.79 -2.0
224,237 + EX31_RS11445 0.80 -1.6
224,237 + EX31_RS11445 0.80 -0.9
224,237 + EX31_RS11445 0.80 +0.3
224,238 - EX31_RS11445 0.80 -0.7
224,238 - EX31_RS11445 0.80 -1.3
224,238 - EX31_RS11445 0.80 -1.4
224,255 + EX31_RS11445 0.81 -0.4
224,255 + EX31_RS11445 0.81 -1.7
224,276 - EX31_RS11445 0.83 -2.4

Or see this region's nucleotide sequence