Strain Fitness in Rahnella sp. WP5 around EX31_RS11295

Experiment: L-Glutamine (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS11285 and EX31_RS11290 are separated by 127 nucleotidesEX31_RS11290 and EX31_RS11295 are separated by 21 nucleotidesEX31_RS11295 and EX31_RS11300 are separated by 34 nucleotides EX31_RS11285: EX31_RS11285 - flagellar basal body L-ring protein FlgH, at 190,259 to 190,963 _RS11285 EX31_RS11290: EX31_RS11290 - flagellar basal-body rod protein FlgG, at 191,091 to 191,873 _RS11290 EX31_RS11295: EX31_RS11295 - flagellar basal body rod protein FlgF, at 191,895 to 192,650 _RS11295 EX31_RS11300: EX31_RS11300 - flagellar hook protein FlgE, at 192,685 to 193,929 _RS11300 Position (kb) 191 192 193Strain fitness (log2 ratio) -2 -1 0 1 2 3at 190.907 kb on + strandat 190.952 kb on - strandat 191.141 kb on + strandat 191.141 kb on + strandat 191.142 kb on - strandat 191.142 kb on - strandat 191.208 kb on - strand, within EX31_RS11290at 191.221 kb on + strand, within EX31_RS11290at 191.222 kb on - strand, within EX31_RS11290at 191.222 kb on - strand, within EX31_RS11290at 191.231 kb on - strand, within EX31_RS11290at 191.534 kb on - strand, within EX31_RS11290at 191.534 kb on - strand, within EX31_RS11290at 191.534 kb on - strand, within EX31_RS11290at 191.645 kb on + strand, within EX31_RS11290at 191.646 kb on - strand, within EX31_RS11290at 191.771 kb on + strand, within EX31_RS11290at 191.772 kb on - strand, within EX31_RS11290at 191.811 kb on + strandat 191.812 kb on - strandat 191.812 kb on - strandat 191.856 kb on - strandat 191.857 kb on + strandat 191.857 kb on + strandat 191.857 kb on + strandat 191.858 kb on - strandat 191.858 kb on - strandat 191.858 kb on - strandat 191.858 kb on - strandat 191.858 kb on - strandat 191.858 kb on - strandat 191.858 kb on - strandat 191.858 kb on - strandat 191.858 kb on - strandat 192.119 kb on + strand, within EX31_RS11295at 192.119 kb on + strand, within EX31_RS11295at 192.119 kb on + strand, within EX31_RS11295at 192.119 kb on + strand, within EX31_RS11295at 192.120 kb on - strand, within EX31_RS11295at 192.120 kb on - strand, within EX31_RS11295at 192.120 kb on - strand, within EX31_RS11295at 192.120 kb on - strand, within EX31_RS11295at 192.355 kb on + strand, within EX31_RS11295at 192.356 kb on - strand, within EX31_RS11295at 192.356 kb on - strand, within EX31_RS11295at 192.405 kb on - strand, within EX31_RS11295at 192.433 kb on + strand, within EX31_RS11295at 192.433 kb on + strand, within EX31_RS11295at 192.456 kb on - strand, within EX31_RS11295at 192.456 kb on - strand, within EX31_RS11295at 192.560 kb on + strand, within EX31_RS11295at 192.561 kb on - strand, within EX31_RS11295at 192.561 kb on - strand, within EX31_RS11295at 192.561 kb on - strand, within EX31_RS11295at 192.634 kb on + strandat 192.634 kb on + strandat 192.635 kb on - strandat 192.639 kb on - strandat 192.639 kb on - strandat 192.687 kb on - strandat 192.753 kb on - strandat 192.757 kb on - strandat 192.987 kb on - strand, within EX31_RS11300at 192.987 kb on - strand, within EX31_RS11300at 192.987 kb on - strand, within EX31_RS11300at 192.987 kb on - strand, within EX31_RS11300at 193.046 kb on + strand, within EX31_RS11300at 193.233 kb on + strand, within EX31_RS11300at 193.234 kb on - strand, within EX31_RS11300at 193.331 kb on + strand, within EX31_RS11300at 193.331 kb on + strand, within EX31_RS11300at 193.332 kb on - strand, within EX31_RS11300at 193.332 kb on - strand, within EX31_RS11300at 193.367 kb on + strand, within EX31_RS11300at 193.367 kb on + strand, within EX31_RS11300at 193.367 kb on + strand, within EX31_RS11300at 193.368 kb on - strand, within EX31_RS11300at 193.368 kb on - strand, within EX31_RS11300at 193.368 kb on - strand, within EX31_RS11300at 193.368 kb on - strand, within EX31_RS11300at 193.388 kb on + strand, within EX31_RS11300at 193.388 kb on + strand, within EX31_RS11300at 193.388 kb on + strand, within EX31_RS11300at 193.388 kb on + strand, within EX31_RS11300at 193.388 kb on + strand, within EX31_RS11300at 193.388 kb on + strand, within EX31_RS11300at 193.388 kb on + strand, within EX31_RS11300at 193.389 kb on - strand, within EX31_RS11300at 193.389 kb on - strand, within EX31_RS11300at 193.389 kb on - strand, within EX31_RS11300at 193.389 kb on - strand, within EX31_RS11300at 193.389 kb on - strand, within EX31_RS11300at 193.389 kb on - strand, within EX31_RS11300at 193.389 kb on - strand, within EX31_RS11300at 193.389 kb on - strand, within EX31_RS11300at 193.394 kb on + strand, within EX31_RS11300at 193.394 kb on + strand, within EX31_RS11300at 193.395 kb on - strand, within EX31_RS11300at 193.395 kb on - strand, within EX31_RS11300at 193.395 kb on - strand, within EX31_RS11300at 193.395 kb on - strand, within EX31_RS11300at 193.612 kb on - strand, within EX31_RS11300at 193.612 kb on - strand, within EX31_RS11300

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); RCH2 media; no shaking
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190,907 + -0.7
190,952 - +0.5
191,141 + +0.9
191,141 + -1.9
191,142 - -0.8
191,142 - -1.2
191,208 - EX31_RS11290 0.15 -2.5
191,221 + EX31_RS11290 0.17 -1.9
191,222 - EX31_RS11290 0.17 -0.7
191,222 - EX31_RS11290 0.17 -0.0
191,231 - EX31_RS11290 0.18 +0.5
191,534 - EX31_RS11290 0.57 -1.0
191,534 - EX31_RS11290 0.57 -2.7
191,534 - EX31_RS11290 0.57 -0.6
191,645 + EX31_RS11290 0.71 +0.3
191,646 - EX31_RS11290 0.71 -0.5
191,771 + EX31_RS11290 0.87 -1.7
191,772 - EX31_RS11290 0.87 -0.1
191,811 + -0.1
191,812 - +0.1
191,812 - -0.2
191,856 - -1.1
191,857 + +0.3
191,857 + -0.2
191,857 + +0.4
191,858 - -2.7
191,858 - -1.0
191,858 - -0.2
191,858 - +0.1
191,858 - -1.5
191,858 - -2.0
191,858 - +0.5
191,858 - +1.9
191,858 - -0.3
192,119 + EX31_RS11295 0.30 -0.3
192,119 + EX31_RS11295 0.30 -1.3
192,119 + EX31_RS11295 0.30 -1.9
192,119 + EX31_RS11295 0.30 -1.5
192,120 - EX31_RS11295 0.30 +0.3
192,120 - EX31_RS11295 0.30 -0.8
192,120 - EX31_RS11295 0.30 -1.4
192,120 - EX31_RS11295 0.30 -0.7
192,355 + EX31_RS11295 0.61 -1.8
192,356 - EX31_RS11295 0.61 -0.7
192,356 - EX31_RS11295 0.61 +0.3
192,405 - EX31_RS11295 0.67 -0.6
192,433 + EX31_RS11295 0.71 -0.4
192,433 + EX31_RS11295 0.71 +0.8
192,456 - EX31_RS11295 0.74 -0.4
192,456 - EX31_RS11295 0.74 -0.5
192,560 + EX31_RS11295 0.88 +1.3
192,561 - EX31_RS11295 0.88 -0.7
192,561 - EX31_RS11295 0.88 -1.4
192,561 - EX31_RS11295 0.88 -1.0
192,634 + -2.0
192,634 + -0.4
192,635 - +0.3
192,639 - +0.2
192,639 - -1.2
192,687 - -1.6
192,753 - -1.0
192,757 - -1.9
192,987 - EX31_RS11300 0.24 -1.5
192,987 - EX31_RS11300 0.24 -1.7
192,987 - EX31_RS11300 0.24 -1.0
192,987 - EX31_RS11300 0.24 -0.1
193,046 + EX31_RS11300 0.29 -1.3
193,233 + EX31_RS11300 0.44 -1.9
193,234 - EX31_RS11300 0.44 +0.1
193,331 + EX31_RS11300 0.52 +1.5
193,331 + EX31_RS11300 0.52 -1.4
193,332 - EX31_RS11300 0.52 +0.9
193,332 - EX31_RS11300 0.52 +0.3
193,367 + EX31_RS11300 0.55 -1.3
193,367 + EX31_RS11300 0.55 +0.1
193,367 + EX31_RS11300 0.55 -0.1
193,368 - EX31_RS11300 0.55 -0.8
193,368 - EX31_RS11300 0.55 -1.6
193,368 - EX31_RS11300 0.55 -2.1
193,368 - EX31_RS11300 0.55 -2.0
193,388 + EX31_RS11300 0.56 +2.9
193,388 + EX31_RS11300 0.56 +0.1
193,388 + EX31_RS11300 0.56 -2.0
193,388 + EX31_RS11300 0.56 -1.9
193,388 + EX31_RS11300 0.56 -1.0
193,388 + EX31_RS11300 0.56 -1.3
193,388 + EX31_RS11300 0.56 -0.1
193,389 - EX31_RS11300 0.57 +0.1
193,389 - EX31_RS11300 0.57 -2.0
193,389 - EX31_RS11300 0.57 -0.6
193,389 - EX31_RS11300 0.57 -0.9
193,389 - EX31_RS11300 0.57 -0.7
193,389 - EX31_RS11300 0.57 -0.8
193,389 - EX31_RS11300 0.57 -1.3
193,389 - EX31_RS11300 0.57 -1.9
193,394 + EX31_RS11300 0.57 -0.4
193,394 + EX31_RS11300 0.57 -0.8
193,395 - EX31_RS11300 0.57 -1.3
193,395 - EX31_RS11300 0.57 -0.4
193,395 - EX31_RS11300 0.57 -1.1
193,395 - EX31_RS11300 0.57 -1.4
193,612 - EX31_RS11300 0.74 -0.8
193,612 - EX31_RS11300 0.74 +0.6

Or see this region's nucleotide sequence