Strain Fitness in Rahnella sp. WP5 around EX31_RS08130

Experiment: L-Glutamine (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS08125 and EX31_RS08130 are separated by 441 nucleotidesEX31_RS08130 and EX31_RS08135 are separated by 65 nucleotides EX31_RS08125: EX31_RS08125 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 116,171 to 116,824 _RS08125 EX31_RS08130: EX31_RS08130 - accessory factor UbiK family protein, at 117,266 to 117,538 _RS08130 EX31_RS08135: EX31_RS08135 - L-methionine/branched-chain amino acid transporter, at 117,604 to 118,854 _RS08135 Position (kb) 117 118Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 116.849 kb on - strandat 116.858 kb on - strandat 116.911 kb on - strandat 116.911 kb on - strandat 116.941 kb on - strandat 116.941 kb on - strandat 117.002 kb on - strandat 117.143 kb on - strandat 117.143 kb on - strandat 117.143 kb on - strandat 117.143 kb on - strandat 117.143 kb on - strandat 117.143 kb on - strandat 117.143 kb on - strandat 117.143 kb on - strandat 117.143 kb on - strandat 117.145 kb on - strandat 117.154 kb on - strandat 117.187 kb on + strandat 117.187 kb on + strandat 117.188 kb on - strandat 117.188 kb on - strandat 117.205 kb on - strandat 117.206 kb on + strandat 117.206 kb on + strandat 117.206 kb on + strandat 117.206 kb on + strandat 117.207 kb on - strandat 117.226 kb on - strandat 117.226 kb on - strandat 117.226 kb on - strandat 117.226 kb on - strandat 117.226 kb on - strandat 117.230 kb on + strandat 117.263 kb on - strandat 117.316 kb on + strand, within EX31_RS08130at 117.316 kb on + strand, within EX31_RS08130at 117.317 kb on - strand, within EX31_RS08130at 117.373 kb on - strand, within EX31_RS08130at 117.403 kb on - strand, within EX31_RS08130at 117.442 kb on - strand, within EX31_RS08130at 117.541 kb on - strandat 117.541 kb on - strandat 117.541 kb on - strandat 117.552 kb on + strandat 117.552 kb on + strandat 117.610 kb on + strandat 117.610 kb on + strandat 117.611 kb on - strandat 117.611 kb on - strandat 117.620 kb on - strandat 117.620 kb on - strandat 117.641 kb on - strandat 117.641 kb on - strandat 117.674 kb on + strandat 117.675 kb on - strandat 117.675 kb on - strandat 117.675 kb on - strandat 117.675 kb on - strandat 117.675 kb on - strandat 117.718 kb on + strandat 117.718 kb on + strandat 117.718 kb on + strandat 117.718 kb on + strandat 117.719 kb on - strandat 117.719 kb on - strandat 117.719 kb on - strandat 117.780 kb on + strand, within EX31_RS08135at 117.780 kb on + strand, within EX31_RS08135at 117.780 kb on + strand, within EX31_RS08135at 117.780 kb on + strand, within EX31_RS08135at 117.780 kb on + strand, within EX31_RS08135at 117.780 kb on + strand, within EX31_RS08135at 117.780 kb on + strand, within EX31_RS08135at 117.780 kb on + strand, within EX31_RS08135at 117.780 kb on + strand, within EX31_RS08135at 117.780 kb on + strand, within EX31_RS08135at 117.780 kb on + strand, within EX31_RS08135at 117.780 kb on + strand, within EX31_RS08135at 117.780 kb on + strand, within EX31_RS08135at 117.780 kb on + strand, within EX31_RS08135at 117.780 kb on + strand, within EX31_RS08135at 117.780 kb on + strand, within EX31_RS08135at 117.780 kb on + strand, within EX31_RS08135at 117.780 kb on + strand, within EX31_RS08135at 117.780 kb on + strand, within EX31_RS08135at 117.780 kb on + strand, within EX31_RS08135at 117.781 kb on - strand, within EX31_RS08135at 117.781 kb on - strand, within EX31_RS08135at 117.781 kb on - strand, within EX31_RS08135at 117.781 kb on - strand, within EX31_RS08135at 117.781 kb on - strand, within EX31_RS08135at 117.781 kb on - strand, within EX31_RS08135at 117.781 kb on - strand, within EX31_RS08135at 117.781 kb on - strand, within EX31_RS08135at 117.781 kb on - strand, within EX31_RS08135at 117.781 kb on - strand, within EX31_RS08135at 117.781 kb on - strand, within EX31_RS08135at 117.781 kb on - strand, within EX31_RS08135at 117.781 kb on - strand, within EX31_RS08135at 117.784 kb on + strand, within EX31_RS08135at 117.784 kb on + strand, within EX31_RS08135at 117.784 kb on + strand, within EX31_RS08135at 117.784 kb on + strand, within EX31_RS08135at 117.784 kb on + strand, within EX31_RS08135at 117.784 kb on + strand, within EX31_RS08135at 117.784 kb on + strand, within EX31_RS08135at 117.784 kb on + strand, within EX31_RS08135at 117.784 kb on + strand, within EX31_RS08135at 117.784 kb on + strand, within EX31_RS08135at 117.784 kb on + strand, within EX31_RS08135at 117.785 kb on - strand, within EX31_RS08135at 117.785 kb on - strand, within EX31_RS08135at 117.785 kb on - strand, within EX31_RS08135at 117.785 kb on - strand, within EX31_RS08135at 117.785 kb on - strand, within EX31_RS08135at 117.785 kb on - strand, within EX31_RS08135at 117.785 kb on - strand, within EX31_RS08135at 117.785 kb on - strand, within EX31_RS08135at 117.785 kb on - strand, within EX31_RS08135at 117.791 kb on + strand, within EX31_RS08135at 117.792 kb on - strand, within EX31_RS08135at 117.818 kb on + strand, within EX31_RS08135at 117.819 kb on - strand, within EX31_RS08135at 117.867 kb on + strand, within EX31_RS08135at 117.868 kb on - strand, within EX31_RS08135at 117.868 kb on - strand, within EX31_RS08135at 117.868 kb on - strand, within EX31_RS08135at 117.868 kb on - strand, within EX31_RS08135at 117.868 kb on - strand, within EX31_RS08135at 117.942 kb on + strand, within EX31_RS08135at 118.002 kb on + strand, within EX31_RS08135at 118.002 kb on + strand, within EX31_RS08135at 118.002 kb on + strand, within EX31_RS08135at 118.003 kb on - strand, within EX31_RS08135at 118.003 kb on - strand, within EX31_RS08135at 118.028 kb on + strand, within EX31_RS08135at 118.029 kb on - strand, within EX31_RS08135at 118.149 kb on + strand, within EX31_RS08135at 118.149 kb on + strand, within EX31_RS08135at 118.149 kb on + strand, within EX31_RS08135at 118.149 kb on + strand, within EX31_RS08135at 118.149 kb on + strand, within EX31_RS08135at 118.149 kb on + strand, within EX31_RS08135at 118.149 kb on + strand, within EX31_RS08135at 118.149 kb on + strand, within EX31_RS08135at 118.149 kb on + strand, within EX31_RS08135at 118.149 kb on + strand, within EX31_RS08135at 118.149 kb on + strand, within EX31_RS08135at 118.149 kb on + strand, within EX31_RS08135at 118.149 kb on + strand, within EX31_RS08135at 118.149 kb on + strand, within EX31_RS08135at 118.150 kb on - strand, within EX31_RS08135at 118.150 kb on - strand, within EX31_RS08135at 118.150 kb on - strand, within EX31_RS08135at 118.150 kb on - strand, within EX31_RS08135at 118.150 kb on - strand, within EX31_RS08135at 118.150 kb on - strand, within EX31_RS08135at 118.150 kb on - strand, within EX31_RS08135at 118.150 kb on - strand, within EX31_RS08135at 118.150 kb on - strand, within EX31_RS08135at 118.150 kb on - strand, within EX31_RS08135at 118.150 kb on - strand, within EX31_RS08135at 118.150 kb on - strand, within EX31_RS08135at 118.150 kb on - strand, within EX31_RS08135at 118.150 kb on - strand, within EX31_RS08135at 118.150 kb on - strand, within EX31_RS08135at 118.161 kb on - strand, within EX31_RS08135at 118.161 kb on - strand, within EX31_RS08135at 118.353 kb on + strand, within EX31_RS08135at 118.416 kb on + strand, within EX31_RS08135at 118.416 kb on + strand, within EX31_RS08135at 118.458 kb on + strand, within EX31_RS08135at 118.458 kb on + strand, within EX31_RS08135at 118.459 kb on - strand, within EX31_RS08135at 118.495 kb on + strand, within EX31_RS08135at 118.495 kb on + strand, within EX31_RS08135at 118.495 kb on + strand, within EX31_RS08135at 118.495 kb on + strand, within EX31_RS08135at 118.495 kb on + strand, within EX31_RS08135at 118.495 kb on + strand, within EX31_RS08135at 118.495 kb on + strand, within EX31_RS08135at 118.496 kb on - strand, within EX31_RS08135at 118.496 kb on - strand, within EX31_RS08135

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); RCH2 media; no shaking
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116,849 - -1.0
116,858 - -0.3
116,911 - +0.4
116,911 - +1.5
116,941 - -0.5
116,941 - -1.4
117,002 - +0.6
117,143 - -0.2
117,143 - +0.2
117,143 - +0.2
117,143 - -1.8
117,143 - +1.9
117,143 - +1.2
117,143 - +0.5
117,143 - -1.5
117,143 - -1.0
117,145 - +1.5
117,154 - -0.3
117,187 + -0.4
117,187 + +0.7
117,188 - -0.4
117,188 - +1.0
117,205 - +1.1
117,206 + -0.4
117,206 + +3.5
117,206 + -0.2
117,206 + +0.2
117,207 - +0.6
117,226 - -0.5
117,226 - -0.7
117,226 - -0.3
117,226 - +2.8
117,226 - -0.8
117,230 + -0.6
117,263 - +0.3
117,316 + EX31_RS08130 0.18 +0.9
117,316 + EX31_RS08130 0.18 -1.4
117,317 - EX31_RS08130 0.19 +1.2
117,373 - EX31_RS08130 0.39 -0.8
117,403 - EX31_RS08130 0.50 -0.4
117,442 - EX31_RS08130 0.64 -1.6
117,541 - +0.6
117,541 - -0.0
117,541 - -1.1
117,552 + -0.5
117,552 + -1.7
117,610 + -2.0
117,610 + +1.1
117,611 - +0.7
117,611 - +0.8
117,620 - -0.1
117,620 - +0.2
117,641 - -0.6
117,641 - -0.1
117,674 + -0.3
117,675 - +0.8
117,675 - -1.6
117,675 - -0.3
117,675 - -0.2
117,675 - -0.1
117,718 + -0.7
117,718 + -0.6
117,718 + -1.5
117,718 + +1.2
117,719 - -0.4
117,719 - -0.4
117,719 - -0.2
117,780 + EX31_RS08135 0.14 +0.6
117,780 + EX31_RS08135 0.14 +0.5
117,780 + EX31_RS08135 0.14 +0.2
117,780 + EX31_RS08135 0.14 +0.1
117,780 + EX31_RS08135 0.14 -1.0
117,780 + EX31_RS08135 0.14 +2.1
117,780 + EX31_RS08135 0.14 +0.1
117,780 + EX31_RS08135 0.14 +0.9
117,780 + EX31_RS08135 0.14 +0.4
117,780 + EX31_RS08135 0.14 -1.3
117,780 + EX31_RS08135 0.14 +0.0
117,780 + EX31_RS08135 0.14 -0.3
117,780 + EX31_RS08135 0.14 +0.5
117,780 + EX31_RS08135 0.14 -0.9
117,780 + EX31_RS08135 0.14 -0.1
117,780 + EX31_RS08135 0.14 +0.5
117,780 + EX31_RS08135 0.14 -0.3
117,780 + EX31_RS08135 0.14 +0.1
117,780 + EX31_RS08135 0.14 -0.1
117,780 + EX31_RS08135 0.14 +0.6
117,781 - EX31_RS08135 0.14 +1.1
117,781 - EX31_RS08135 0.14 -1.1
117,781 - EX31_RS08135 0.14 -0.1
117,781 - EX31_RS08135 0.14 -0.8
117,781 - EX31_RS08135 0.14 +0.1
117,781 - EX31_RS08135 0.14 +0.1
117,781 - EX31_RS08135 0.14 +2.5
117,781 - EX31_RS08135 0.14 -0.3
117,781 - EX31_RS08135 0.14 +0.2
117,781 - EX31_RS08135 0.14 -0.8
117,781 - EX31_RS08135 0.14 -0.1
117,781 - EX31_RS08135 0.14 +0.3
117,781 - EX31_RS08135 0.14 -0.2
117,784 + EX31_RS08135 0.14 -0.4
117,784 + EX31_RS08135 0.14 +0.4
117,784 + EX31_RS08135 0.14 -0.7
117,784 + EX31_RS08135 0.14 +0.8
117,784 + EX31_RS08135 0.14 +0.2
117,784 + EX31_RS08135 0.14 -0.3
117,784 + EX31_RS08135 0.14 +1.2
117,784 + EX31_RS08135 0.14 +0.5
117,784 + EX31_RS08135 0.14 -0.6
117,784 + EX31_RS08135 0.14 +0.6
117,784 + EX31_RS08135 0.14 +0.9
117,785 - EX31_RS08135 0.14 -0.8
117,785 - EX31_RS08135 0.14 +1.5
117,785 - EX31_RS08135 0.14 +0.5
117,785 - EX31_RS08135 0.14 -0.0
117,785 - EX31_RS08135 0.14 +1.2
117,785 - EX31_RS08135 0.14 -0.6
117,785 - EX31_RS08135 0.14 -0.0
117,785 - EX31_RS08135 0.14 -1.1
117,785 - EX31_RS08135 0.14 -0.5
117,791 + EX31_RS08135 0.15 -0.2
117,792 - EX31_RS08135 0.15 +0.0
117,818 + EX31_RS08135 0.17 +0.3
117,819 - EX31_RS08135 0.17 +0.4
117,867 + EX31_RS08135 0.21 -0.8
117,868 - EX31_RS08135 0.21 +0.3
117,868 - EX31_RS08135 0.21 +2.2
117,868 - EX31_RS08135 0.21 +0.0
117,868 - EX31_RS08135 0.21 -0.7
117,868 - EX31_RS08135 0.21 -0.3
117,942 + EX31_RS08135 0.27 +0.5
118,002 + EX31_RS08135 0.32 +1.1
118,002 + EX31_RS08135 0.32 +0.5
118,002 + EX31_RS08135 0.32 +0.7
118,003 - EX31_RS08135 0.32 -0.6
118,003 - EX31_RS08135 0.32 +0.7
118,028 + EX31_RS08135 0.34 +0.1
118,029 - EX31_RS08135 0.34 -1.1
118,149 + EX31_RS08135 0.44 +1.5
118,149 + EX31_RS08135 0.44 -1.0
118,149 + EX31_RS08135 0.44 +0.6
118,149 + EX31_RS08135 0.44 -3.2
118,149 + EX31_RS08135 0.44 -0.4
118,149 + EX31_RS08135 0.44 -0.7
118,149 + EX31_RS08135 0.44 +0.6
118,149 + EX31_RS08135 0.44 -0.9
118,149 + EX31_RS08135 0.44 +1.0
118,149 + EX31_RS08135 0.44 +1.0
118,149 + EX31_RS08135 0.44 -0.2
118,149 + EX31_RS08135 0.44 -0.8
118,149 + EX31_RS08135 0.44 -0.1
118,149 + EX31_RS08135 0.44 -0.4
118,150 - EX31_RS08135 0.44 -0.8
118,150 - EX31_RS08135 0.44 +0.4
118,150 - EX31_RS08135 0.44 -1.7
118,150 - EX31_RS08135 0.44 +0.7
118,150 - EX31_RS08135 0.44 -0.3
118,150 - EX31_RS08135 0.44 +1.2
118,150 - EX31_RS08135 0.44 +0.3
118,150 - EX31_RS08135 0.44 -0.3
118,150 - EX31_RS08135 0.44 +0.5
118,150 - EX31_RS08135 0.44 -0.1
118,150 - EX31_RS08135 0.44 -0.2
118,150 - EX31_RS08135 0.44 +1.4
118,150 - EX31_RS08135 0.44 -0.5
118,150 - EX31_RS08135 0.44 +0.5
118,150 - EX31_RS08135 0.44 +0.4
118,161 - EX31_RS08135 0.45 +1.1
118,161 - EX31_RS08135 0.45 -0.1
118,353 + EX31_RS08135 0.60 +0.2
118,416 + EX31_RS08135 0.65 +0.2
118,416 + EX31_RS08135 0.65 +1.1
118,458 + EX31_RS08135 0.68 -1.5
118,458 + EX31_RS08135 0.68 +0.4
118,459 - EX31_RS08135 0.68 +0.2
118,495 + EX31_RS08135 0.71 +0.1
118,495 + EX31_RS08135 0.71 -0.5
118,495 + EX31_RS08135 0.71 +1.2
118,495 + EX31_RS08135 0.71 -0.5
118,495 + EX31_RS08135 0.71 +0.9
118,495 + EX31_RS08135 0.71 -0.4
118,495 + EX31_RS08135 0.71 +0.7
118,496 - EX31_RS08135 0.71 +0.5
118,496 - EX31_RS08135 0.71 +0.5

Or see this region's nucleotide sequence