Strain Fitness in Rahnella sp. WP5 around EX31_RS04105

Experiment: L-Glutamine (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS04100 and EX31_RS04105 are separated by 2 nucleotidesEX31_RS04105 and EX31_RS04110 are separated by 231 nucleotidesEX31_RS04110 and EX31_RS04115 overlap by 32 nucleotides EX31_RS04100: EX31_RS04100 - type II toxin-antitoxin system HipA family toxin, at 345,988 to 347,247 _RS04100 EX31_RS04105: EX31_RS04105 - helix-turn-helix domain-containing protein, at 347,250 to 347,573 _RS04105 EX31_RS04110: EX31_RS04110 - ribosomal protein S18-alanine N-acetyltransferase, at 347,805 to 348,248 _RS04110 EX31_RS04115: EX31_RS04115 - DNA polymerase III subunit psi, at 348,217 to 348,630 _RS04115 Position (kb) 347 348Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 346.255 kb on - strand, within EX31_RS04100at 346.268 kb on + strand, within EX31_RS04100at 346.268 kb on + strand, within EX31_RS04100at 346.268 kb on + strand, within EX31_RS04100at 346.304 kb on + strand, within EX31_RS04100at 346.305 kb on - strand, within EX31_RS04100at 346.305 kb on - strand, within EX31_RS04100at 346.324 kb on + strand, within EX31_RS04100at 346.324 kb on + strand, within EX31_RS04100at 346.387 kb on - strand, within EX31_RS04100at 346.413 kb on + strand, within EX31_RS04100at 346.413 kb on + strand, within EX31_RS04100at 346.413 kb on + strand, within EX31_RS04100at 346.413 kb on + strand, within EX31_RS04100at 346.414 kb on - strand, within EX31_RS04100at 346.415 kb on + strand, within EX31_RS04100at 346.415 kb on + strand, within EX31_RS04100at 346.415 kb on + strand, within EX31_RS04100at 346.416 kb on - strand, within EX31_RS04100at 346.431 kb on + strand, within EX31_RS04100at 346.439 kb on + strand, within EX31_RS04100at 346.439 kb on + strand, within EX31_RS04100at 346.439 kb on + strand, within EX31_RS04100at 346.440 kb on - strand, within EX31_RS04100at 346.440 kb on - strand, within EX31_RS04100at 346.440 kb on - strand, within EX31_RS04100at 346.440 kb on - strand, within EX31_RS04100at 346.443 kb on + strand, within EX31_RS04100at 346.444 kb on - strand, within EX31_RS04100at 346.444 kb on - strand, within EX31_RS04100at 346.444 kb on - strand, within EX31_RS04100at 346.444 kb on - strand, within EX31_RS04100at 346.444 kb on - strand, within EX31_RS04100at 346.444 kb on - strand, within EX31_RS04100at 346.444 kb on - strand, within EX31_RS04100at 346.444 kb on - strand, within EX31_RS04100at 346.444 kb on - strand, within EX31_RS04100at 346.444 kb on - strand, within EX31_RS04100at 346.445 kb on + strand, within EX31_RS04100at 346.445 kb on + strand, within EX31_RS04100at 346.445 kb on + strand, within EX31_RS04100at 346.452 kb on + strand, within EX31_RS04100at 346.452 kb on + strand, within EX31_RS04100at 346.452 kb on + strand, within EX31_RS04100at 346.453 kb on - strand, within EX31_RS04100at 346.453 kb on - strand, within EX31_RS04100at 346.454 kb on + strand, within EX31_RS04100at 346.454 kb on + strand, within EX31_RS04100at 346.454 kb on + strand, within EX31_RS04100at 346.455 kb on - strand, within EX31_RS04100at 346.455 kb on - strand, within EX31_RS04100at 346.455 kb on - strand, within EX31_RS04100at 346.455 kb on - strand, within EX31_RS04100at 346.458 kb on + strand, within EX31_RS04100at 346.459 kb on - strand, within EX31_RS04100at 346.459 kb on - strand, within EX31_RS04100at 346.459 kb on - strand, within EX31_RS04100at 346.459 kb on - strand, within EX31_RS04100at 346.459 kb on - strand, within EX31_RS04100at 346.550 kb on + strand, within EX31_RS04100at 346.550 kb on + strand, within EX31_RS04100at 346.550 kb on + strand, within EX31_RS04100at 346.551 kb on - strand, within EX31_RS04100at 346.551 kb on - strand, within EX31_RS04100at 346.611 kb on + strand, within EX31_RS04100at 346.612 kb on - strand, within EX31_RS04100at 346.637 kb on - strand, within EX31_RS04100at 346.659 kb on + strand, within EX31_RS04100at 346.734 kb on + strand, within EX31_RS04100at 346.735 kb on - strand, within EX31_RS04100at 346.735 kb on - strand, within EX31_RS04100at 346.735 kb on - strand, within EX31_RS04100at 346.762 kb on + strand, within EX31_RS04100at 346.812 kb on + strand, within EX31_RS04100at 346.876 kb on + strand, within EX31_RS04100at 346.877 kb on - strand, within EX31_RS04100at 346.890 kb on + strand, within EX31_RS04100at 346.890 kb on + strand, within EX31_RS04100at 346.891 kb on - strand, within EX31_RS04100at 346.891 kb on - strand, within EX31_RS04100at 346.891 kb on - strand, within EX31_RS04100at 346.891 kb on - strand, within EX31_RS04100at 346.934 kb on + strand, within EX31_RS04100at 346.943 kb on - strand, within EX31_RS04100at 347.052 kb on + strand, within EX31_RS04100at 347.062 kb on - strand, within EX31_RS04100at 347.062 kb on - strand, within EX31_RS04100at 347.062 kb on - strand, within EX31_RS04100at 347.069 kb on + strand, within EX31_RS04100at 347.069 kb on + strand, within EX31_RS04100at 347.069 kb on + strand, within EX31_RS04100at 347.070 kb on - strand, within EX31_RS04100at 347.070 kb on - strand, within EX31_RS04100at 347.070 kb on - strand, within EX31_RS04100at 347.097 kb on + strand, within EX31_RS04100at 347.098 kb on - strand, within EX31_RS04100at 347.098 kb on - strand, within EX31_RS04100at 347.122 kb on + strandat 347.122 kb on + strandat 347.123 kb on - strandat 347.132 kb on + strandat 347.149 kb on + strandat 347.149 kb on + strandat 347.150 kb on - strandat 347.154 kb on + strandat 347.154 kb on + strandat 347.155 kb on - strandat 347.172 kb on - strandat 347.172 kb on - strandat 347.172 kb on - strandat 347.179 kb on + strandat 347.179 kb on + strandat 347.207 kb on + strandat 347.207 kb on + strandat 347.207 kb on + strandat 347.207 kb on + strandat 347.208 kb on - strandat 347.208 kb on - strandat 347.215 kb on + strandat 347.215 kb on + strandat 347.216 kb on - strandat 347.216 kb on - strandat 347.216 kb on - strandat 347.216 kb on - strandat 347.216 kb on - strandat 347.216 kb on - strandat 347.251 kb on + strandat 347.252 kb on - strandat 347.252 kb on - strandat 347.260 kb on - strandat 347.268 kb on + strandat 347.268 kb on + strandat 347.268 kb on + strandat 347.268 kb on + strandat 347.268 kb on + strandat 347.268 kb on + strandat 347.268 kb on + strandat 347.269 kb on - strandat 347.269 kb on - strandat 347.269 kb on - strandat 347.269 kb on - strandat 347.269 kb on - strandat 347.269 kb on - strandat 347.269 kb on - strandat 347.324 kb on + strand, within EX31_RS04105at 347.330 kb on + strand, within EX31_RS04105at 347.333 kb on + strand, within EX31_RS04105at 347.333 kb on + strand, within EX31_RS04105at 347.333 kb on + strand, within EX31_RS04105at 347.333 kb on + strand, within EX31_RS04105at 347.357 kb on + strand, within EX31_RS04105at 347.501 kb on + strand, within EX31_RS04105at 347.574 kb on + strandat 347.574 kb on + strandat 347.574 kb on + strandat 347.578 kb on + strandat 347.644 kb on + strandat 347.728 kb on + strandat 347.729 kb on - strandat 347.729 kb on - strandat 347.735 kb on - strandat 347.773 kb on + strandat 347.773 kb on + strandat 347.774 kb on - strandat 347.784 kb on - strandat 347.784 kb on - strandat 347.798 kb on + strandat 347.803 kb on + strandat 347.804 kb on - strandat 347.804 kb on - strandat 347.804 kb on - strandat 347.861 kb on - strand, within EX31_RS04110at 347.863 kb on + strand, within EX31_RS04110at 347.863 kb on + strand, within EX31_RS04110at 347.863 kb on + strand, within EX31_RS04110at 347.863 kb on + strand, within EX31_RS04110at 347.864 kb on - strand, within EX31_RS04110at 347.864 kb on - strand, within EX31_RS04110at 347.864 kb on - strand, within EX31_RS04110at 347.864 kb on - strand, within EX31_RS04110at 347.864 kb on - strand, within EX31_RS04110at 347.864 kb on - strand, within EX31_RS04110at 347.864 kb on - strand, within EX31_RS04110at 347.864 kb on - strand, within EX31_RS04110at 347.864 kb on - strand, within EX31_RS04110at 347.888 kb on + strand, within EX31_RS04110at 347.888 kb on + strand, within EX31_RS04110at 347.889 kb on - strand, within EX31_RS04110at 347.889 kb on - strand, within EX31_RS04110at 347.950 kb on - strand, within EX31_RS04110at 347.954 kb on + strand, within EX31_RS04110at 347.955 kb on - strand, within EX31_RS04110at 348.010 kb on - strand, within EX31_RS04110at 348.045 kb on - strand, within EX31_RS04110at 348.045 kb on - strand, within EX31_RS04110at 348.048 kb on - strand, within EX31_RS04110at 348.158 kb on + strand, within EX31_RS04110at 348.159 kb on - strand, within EX31_RS04110at 348.296 kb on + strand, within EX31_RS04115

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); RCH2 media; no shaking
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346,255 - EX31_RS04100 0.21 +1.2
346,268 + EX31_RS04100 0.22 +1.1
346,268 + EX31_RS04100 0.22 -0.5
346,268 + EX31_RS04100 0.22 +0.7
346,304 + EX31_RS04100 0.25 +0.2
346,305 - EX31_RS04100 0.25 -0.9
346,305 - EX31_RS04100 0.25 +0.2
346,324 + EX31_RS04100 0.27 -0.5
346,324 + EX31_RS04100 0.27 -0.2
346,387 - EX31_RS04100 0.32 -1.1
346,413 + EX31_RS04100 0.34 +0.9
346,413 + EX31_RS04100 0.34 +1.3
346,413 + EX31_RS04100 0.34 -0.2
346,413 + EX31_RS04100 0.34 +1.1
346,414 - EX31_RS04100 0.34 +0.4
346,415 + EX31_RS04100 0.34 +0.2
346,415 + EX31_RS04100 0.34 -0.3
346,415 + EX31_RS04100 0.34 +0.5
346,416 - EX31_RS04100 0.34 -0.6
346,431 + EX31_RS04100 0.35 -0.4
346,439 + EX31_RS04100 0.36 -0.2
346,439 + EX31_RS04100 0.36 -0.5
346,439 + EX31_RS04100 0.36 +0.5
346,440 - EX31_RS04100 0.36 +0.9
346,440 - EX31_RS04100 0.36 -0.9
346,440 - EX31_RS04100 0.36 +0.2
346,440 - EX31_RS04100 0.36 +0.2
346,443 + EX31_RS04100 0.36 +0.0
346,444 - EX31_RS04100 0.36 -0.7
346,444 - EX31_RS04100 0.36 +0.6
346,444 - EX31_RS04100 0.36 -0.8
346,444 - EX31_RS04100 0.36 -0.4
346,444 - EX31_RS04100 0.36 -0.6
346,444 - EX31_RS04100 0.36 +1.6
346,444 - EX31_RS04100 0.36 +0.1
346,444 - EX31_RS04100 0.36 +0.1
346,444 - EX31_RS04100 0.36 +0.5
346,444 - EX31_RS04100 0.36 +1.7
346,445 + EX31_RS04100 0.36 -1.0
346,445 + EX31_RS04100 0.36 +0.0
346,445 + EX31_RS04100 0.36 +0.7
346,452 + EX31_RS04100 0.37 +0.2
346,452 + EX31_RS04100 0.37 -0.1
346,452 + EX31_RS04100 0.37 +0.7
346,453 - EX31_RS04100 0.37 +0.1
346,453 - EX31_RS04100 0.37 -0.3
346,454 + EX31_RS04100 0.37 +1.2
346,454 + EX31_RS04100 0.37 -0.1
346,454 + EX31_RS04100 0.37 -0.0
346,455 - EX31_RS04100 0.37 -0.8
346,455 - EX31_RS04100 0.37 -0.6
346,455 - EX31_RS04100 0.37 -0.5
346,455 - EX31_RS04100 0.37 -0.6
346,458 + EX31_RS04100 0.37 -0.1
346,459 - EX31_RS04100 0.37 -1.7
346,459 - EX31_RS04100 0.37 +0.5
346,459 - EX31_RS04100 0.37 -0.9
346,459 - EX31_RS04100 0.37 -0.1
346,459 - EX31_RS04100 0.37 -0.2
346,550 + EX31_RS04100 0.45 -0.3
346,550 + EX31_RS04100 0.45 -1.2
346,550 + EX31_RS04100 0.45 -2.5
346,551 - EX31_RS04100 0.45 +0.8
346,551 - EX31_RS04100 0.45 +0.5
346,611 + EX31_RS04100 0.49 -0.3
346,612 - EX31_RS04100 0.50 +0.4
346,637 - EX31_RS04100 0.52 -0.3
346,659 + EX31_RS04100 0.53 +0.5
346,734 + EX31_RS04100 0.59 +0.8
346,735 - EX31_RS04100 0.59 +0.6
346,735 - EX31_RS04100 0.59 -0.2
346,735 - EX31_RS04100 0.59 +0.5
346,762 + EX31_RS04100 0.61 +1.2
346,812 + EX31_RS04100 0.65 +0.0
346,876 + EX31_RS04100 0.70 -0.6
346,877 - EX31_RS04100 0.71 +0.3
346,890 + EX31_RS04100 0.72 -1.2
346,890 + EX31_RS04100 0.72 +0.7
346,891 - EX31_RS04100 0.72 -0.3
346,891 - EX31_RS04100 0.72 -1.6
346,891 - EX31_RS04100 0.72 +1.8
346,891 - EX31_RS04100 0.72 +0.5
346,934 + EX31_RS04100 0.75 +0.5
346,943 - EX31_RS04100 0.76 -0.6
347,052 + EX31_RS04100 0.84 +0.5
347,062 - EX31_RS04100 0.85 -1.5
347,062 - EX31_RS04100 0.85 -0.9
347,062 - EX31_RS04100 0.85 -0.5
347,069 + EX31_RS04100 0.86 +0.6
347,069 + EX31_RS04100 0.86 -0.4
347,069 + EX31_RS04100 0.86 -0.8
347,070 - EX31_RS04100 0.86 +1.1
347,070 - EX31_RS04100 0.86 +0.7
347,070 - EX31_RS04100 0.86 +0.5
347,097 + EX31_RS04100 0.88 -1.0
347,098 - EX31_RS04100 0.88 +0.2
347,098 - EX31_RS04100 0.88 +0.3
347,122 + -0.1
347,122 + -0.1
347,123 - -0.3
347,132 + -0.3
347,149 + -1.3
347,149 + -0.4
347,150 - -2.7
347,154 + -0.1
347,154 + -0.3
347,155 - +1.2
347,172 - -0.5
347,172 - -0.4
347,172 - +0.7
347,179 + +0.3
347,179 + +0.5
347,207 + +0.5
347,207 + -0.4
347,207 + -0.8
347,207 + -0.3
347,208 - -1.0
347,208 - -0.2
347,215 + -0.3
347,215 + -1.3
347,216 - -1.0
347,216 - +0.1
347,216 - -0.2
347,216 - +0.9
347,216 - -1.1
347,216 - +0.6
347,251 + -0.3
347,252 - +0.6
347,252 - +0.3
347,260 - -1.0
347,268 + -0.5
347,268 + +0.0
347,268 + +0.1
347,268 + +0.5
347,268 + +2.0
347,268 + +1.3
347,268 + +2.5
347,269 - -1.3
347,269 - -2.7
347,269 - -2.1
347,269 - +1.0
347,269 - -2.4
347,269 - +0.0
347,269 - -3.0
347,324 + EX31_RS04105 0.23 -0.3
347,330 + EX31_RS04105 0.25 -1.0
347,333 + EX31_RS04105 0.26 -0.3
347,333 + EX31_RS04105 0.26 -0.8
347,333 + EX31_RS04105 0.26 -1.4
347,333 + EX31_RS04105 0.26 -0.8
347,357 + EX31_RS04105 0.33 +0.8
347,501 + EX31_RS04105 0.77 -1.7
347,574 + -0.8
347,574 + +1.0
347,574 + -1.8
347,578 + +1.0
347,644 + +0.5
347,728 + -0.1
347,729 - -0.4
347,729 - +1.1
347,735 - +0.8
347,773 + +1.0
347,773 + -0.5
347,774 - +0.0
347,784 - -1.2
347,784 - -1.3
347,798 + -2.1
347,803 + -1.3
347,804 - +0.2
347,804 - -0.5
347,804 - +0.2
347,861 - EX31_RS04110 0.13 -0.9
347,863 + EX31_RS04110 0.13 +0.2
347,863 + EX31_RS04110 0.13 +0.0
347,863 + EX31_RS04110 0.13 +2.0
347,863 + EX31_RS04110 0.13 +0.9
347,864 - EX31_RS04110 0.13 +0.0
347,864 - EX31_RS04110 0.13 -0.1
347,864 - EX31_RS04110 0.13 +0.5
347,864 - EX31_RS04110 0.13 +0.0
347,864 - EX31_RS04110 0.13 +0.5
347,864 - EX31_RS04110 0.13 +0.5
347,864 - EX31_RS04110 0.13 -0.4
347,864 - EX31_RS04110 0.13 +0.0
347,864 - EX31_RS04110 0.13 +0.1
347,888 + EX31_RS04110 0.19 +0.2
347,888 + EX31_RS04110 0.19 -1.8
347,889 - EX31_RS04110 0.19 +0.2
347,889 - EX31_RS04110 0.19 +0.9
347,950 - EX31_RS04110 0.33 +0.7
347,954 + EX31_RS04110 0.34 -0.7
347,955 - EX31_RS04110 0.34 -0.1
348,010 - EX31_RS04110 0.46 +0.7
348,045 - EX31_RS04110 0.54 -0.3
348,045 - EX31_RS04110 0.54 +0.6
348,048 - EX31_RS04110 0.55 -0.8
348,158 + EX31_RS04110 0.80 +0.5
348,159 - EX31_RS04110 0.80 -0.4
348,296 + EX31_RS04115 0.19 -0.8

Or see this region's nucleotide sequence