Strain Fitness in Rahnella sp. WP5 around EX31_RS02295

Experiment: L-Glutamine (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02290 and EX31_RS02295 are separated by 488 nucleotidesEX31_RS02295 and EX31_RS02300 are separated by 45 nucleotides EX31_RS02290: EX31_RS02290 - LacI family DNA-binding transcriptional regulator, at 494,378 to 495,412 _RS02290 EX31_RS02295: EX31_RS02295 - gluconate 2-dehydrogenase subunit 3 family protein, at 495,901 to 496,626 _RS02295 EX31_RS02300: EX31_RS02300 - GMC family oxidoreductase, at 496,672 to 498,441 _RS02300 Position (kb) 495 496 497Strain fitness (log2 ratio) -2 -1 0 1 2 3at 494.971 kb on + strand, within EX31_RS02290at 494.971 kb on + strand, within EX31_RS02290at 494.972 kb on - strand, within EX31_RS02290at 495.053 kb on - strand, within EX31_RS02290at 495.082 kb on + strand, within EX31_RS02290at 495.204 kb on + strand, within EX31_RS02290at 495.325 kb on + strandat 495.326 kb on - strandat 495.326 kb on - strandat 495.326 kb on - strandat 495.367 kb on + strandat 495.367 kb on + strandat 495.367 kb on + strandat 495.368 kb on - strandat 495.368 kb on - strandat 495.383 kb on + strandat 495.394 kb on + strandat 495.411 kb on - strandat 495.448 kb on + strandat 495.448 kb on + strandat 495.449 kb on - strandat 495.449 kb on - strandat 495.498 kb on + strandat 495.499 kb on - strandat 495.510 kb on - strandat 495.526 kb on + strandat 495.527 kb on - strandat 495.527 kb on - strandat 495.658 kb on - strandat 495.782 kb on + strandat 495.783 kb on - strandat 495.783 kb on - strandat 495.856 kb on + strandat 495.856 kb on + strandat 495.857 kb on - strandat 495.900 kb on + strandat 496.028 kb on + strand, within EX31_RS02295at 496.047 kb on - strand, within EX31_RS02295at 496.074 kb on + strand, within EX31_RS02295at 496.198 kb on + strand, within EX31_RS02295at 496.198 kb on + strand, within EX31_RS02295at 496.199 kb on - strand, within EX31_RS02295at 496.200 kb on + strand, within EX31_RS02295at 496.201 kb on - strand, within EX31_RS02295at 496.489 kb on + strand, within EX31_RS02295at 496.641 kb on + strandat 496.667 kb on + strandat 496.668 kb on - strandat 496.682 kb on + strandat 496.682 kb on + strandat 496.841 kb on - strandat 496.841 kb on - strandat 496.847 kb on - strandat 496.860 kb on + strand, within EX31_RS02300at 496.860 kb on + strand, within EX31_RS02300at 496.903 kb on + strand, within EX31_RS02300at 496.903 kb on + strand, within EX31_RS02300at 496.903 kb on + strand, within EX31_RS02300at 496.904 kb on - strand, within EX31_RS02300at 497.054 kb on - strand, within EX31_RS02300at 497.128 kb on + strand, within EX31_RS02300at 497.128 kb on + strand, within EX31_RS02300at 497.129 kb on - strand, within EX31_RS02300at 497.133 kb on + strand, within EX31_RS02300at 497.145 kb on + strand, within EX31_RS02300at 497.146 kb on - strand, within EX31_RS02300at 497.379 kb on + strand, within EX31_RS02300at 497.380 kb on - strand, within EX31_RS02300at 497.380 kb on - strand, within EX31_RS02300at 497.400 kb on + strand, within EX31_RS02300at 497.472 kb on + strand, within EX31_RS02300at 497.482 kb on + strand, within EX31_RS02300at 497.483 kb on - strand, within EX31_RS02300at 497.551 kb on + strand, within EX31_RS02300at 497.551 kb on + strand, within EX31_RS02300at 497.551 kb on + strand, within EX31_RS02300at 497.551 kb on + strand, within EX31_RS02300at 497.551 kb on + strand, within EX31_RS02300at 497.552 kb on - strand, within EX31_RS02300at 497.552 kb on - strand, within EX31_RS02300at 497.552 kb on - strand, within EX31_RS02300at 497.552 kb on - strand, within EX31_RS02300at 497.552 kb on - strand, within EX31_RS02300at 497.552 kb on - strand, within EX31_RS02300

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); RCH2 media; no shaking
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494,971 + EX31_RS02290 0.57 -0.5
494,971 + EX31_RS02290 0.57 +1.4
494,972 - EX31_RS02290 0.57 -2.0
495,053 - EX31_RS02290 0.65 -0.8
495,082 + EX31_RS02290 0.68 +1.0
495,204 + EX31_RS02290 0.80 +0.5
495,325 + -1.3
495,326 - -0.3
495,326 - -0.9
495,326 - +3.1
495,367 + -0.2
495,367 + +0.1
495,367 + +1.2
495,368 - -2.2
495,368 - -0.2
495,383 + +0.6
495,394 + -0.4
495,411 - +1.1
495,448 + -0.6
495,448 + -0.5
495,449 - -0.1
495,449 - +0.3
495,498 + -0.2
495,499 - +0.5
495,510 - -0.9
495,526 + +1.6
495,527 - -1.5
495,527 - -0.4
495,658 - +0.5
495,782 + -0.9
495,783 - +1.5
495,783 - +0.5
495,856 + -0.1
495,856 + -0.2
495,857 - +0.5
495,900 + +1.2
496,028 + EX31_RS02295 0.17 +1.7
496,047 - EX31_RS02295 0.20 +0.0
496,074 + EX31_RS02295 0.24 +2.5
496,198 + EX31_RS02295 0.41 +0.8
496,198 + EX31_RS02295 0.41 +2.1
496,199 - EX31_RS02295 0.41 +0.5
496,200 + EX31_RS02295 0.41 +0.0
496,201 - EX31_RS02295 0.41 +0.3
496,489 + EX31_RS02295 0.81 +1.1
496,641 + -0.1
496,667 + +0.5
496,668 - +0.3
496,682 + +1.5
496,682 + +0.1
496,841 - +0.2
496,841 - -0.2
496,847 - -0.2
496,860 + EX31_RS02300 0.11 -0.1
496,860 + EX31_RS02300 0.11 +0.7
496,903 + EX31_RS02300 0.13 +1.1
496,903 + EX31_RS02300 0.13 +1.1
496,903 + EX31_RS02300 0.13 -0.9
496,904 - EX31_RS02300 0.13 +0.6
497,054 - EX31_RS02300 0.22 -0.9
497,128 + EX31_RS02300 0.26 +1.1
497,128 + EX31_RS02300 0.26 +1.1
497,129 - EX31_RS02300 0.26 -0.2
497,133 + EX31_RS02300 0.26 -0.1
497,145 + EX31_RS02300 0.27 +0.1
497,146 - EX31_RS02300 0.27 -0.5
497,379 + EX31_RS02300 0.40 -2.5
497,380 - EX31_RS02300 0.40 +0.5
497,380 - EX31_RS02300 0.40 +2.1
497,400 + EX31_RS02300 0.41 +0.8
497,472 + EX31_RS02300 0.45 +1.1
497,482 + EX31_RS02300 0.46 -0.5
497,483 - EX31_RS02300 0.46 -0.1
497,551 + EX31_RS02300 0.50 -1.4
497,551 + EX31_RS02300 0.50 +1.4
497,551 + EX31_RS02300 0.50 +0.1
497,551 + EX31_RS02300 0.50 -0.3
497,551 + EX31_RS02300 0.50 +1.7
497,552 - EX31_RS02300 0.50 +0.7
497,552 - EX31_RS02300 0.50 -0.8
497,552 - EX31_RS02300 0.50 -1.5
497,552 - EX31_RS02300 0.50 +0.4
497,552 - EX31_RS02300 0.50 +1.4
497,552 - EX31_RS02300 0.50 +0.2

Or see this region's nucleotide sequence