Strain Fitness in Rahnella sp. WP5 around EX31_RS01465

Experiment: L-Glutamine (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01460 and EX31_RS01465 are separated by 292 nucleotidesEX31_RS01465 and EX31_RS01470 are separated by 3 nucleotidesEX31_RS01470 and EX31_RS01475 are separated by 67 nucleotides EX31_RS01460: EX31_RS01460 - glycine betaine/L-proline transporter ProP, at 328,697 to 330,199 _RS01460 EX31_RS01465: EX31_RS01465 - oligogalacturonate lyase, at 330,492 to 331,673 _RS01465 EX31_RS01470: EX31_RS01470 - cupin domain-containing protein, at 331,677 to 331,997 _RS01470 EX31_RS01475: EX31_RS01475 - RpiB/LacA/LacB family sugar-phosphate isomerase, at 332,065 to 332,703 _RS01475 Position (kb) 330 331 332Strain fitness (log2 ratio) -2 -1 0 1 2at 329.550 kb on + strand, within EX31_RS01460at 329.550 kb on + strand, within EX31_RS01460at 329.646 kb on - strand, within EX31_RS01460at 329.681 kb on - strand, within EX31_RS01460at 329.681 kb on - strand, within EX31_RS01460at 329.681 kb on - strand, within EX31_RS01460at 329.702 kb on - strand, within EX31_RS01460at 329.762 kb on - strand, within EX31_RS01460at 329.762 kb on - strand, within EX31_RS01460at 329.839 kb on + strand, within EX31_RS01460at 329.840 kb on - strand, within EX31_RS01460at 329.840 kb on - strand, within EX31_RS01460at 329.840 kb on - strand, within EX31_RS01460at 329.840 kb on - strand, within EX31_RS01460at 329.840 kb on - strand, within EX31_RS01460at 329.840 kb on - strand, within EX31_RS01460at 329.840 kb on - strand, within EX31_RS01460at 329.840 kb on - strand, within EX31_RS01460at 329.840 kb on - strand, within EX31_RS01460at 330.152 kb on - strandat 330.170 kb on - strandat 330.204 kb on + strandat 330.205 kb on - strandat 330.205 kb on - strandat 330.205 kb on - strandat 330.223 kb on - strandat 330.223 kb on - strandat 330.264 kb on - strandat 330.276 kb on + strandat 330.277 kb on - strandat 330.293 kb on + strandat 330.298 kb on + strandat 330.298 kb on + strandat 330.298 kb on + strandat 330.298 kb on + strandat 330.298 kb on + strandat 330.298 kb on + strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.300 kb on + strandat 330.301 kb on - strandat 330.306 kb on + strandat 330.307 kb on - strandat 330.309 kb on - strandat 330.309 kb on - strandat 330.309 kb on - strandat 330.309 kb on - strandat 330.309 kb on - strandat 330.309 kb on - strandat 330.309 kb on - strandat 330.309 kb on - strandat 330.319 kb on + strandat 330.320 kb on - strandat 330.320 kb on - strandat 330.476 kb on - strandat 330.601 kb on - strandat 330.601 kb on - strandat 330.675 kb on + strand, within EX31_RS01465at 330.676 kb on - strand, within EX31_RS01465at 330.679 kb on - strand, within EX31_RS01465at 330.679 kb on - strand, within EX31_RS01465at 330.679 kb on - strand, within EX31_RS01465at 330.771 kb on + strand, within EX31_RS01465at 330.771 kb on + strand, within EX31_RS01465at 330.778 kb on - strand, within EX31_RS01465at 330.780 kb on + strand, within EX31_RS01465at 330.781 kb on - strand, within EX31_RS01465at 330.798 kb on - strand, within EX31_RS01465at 330.811 kb on + strand, within EX31_RS01465at 330.844 kb on - strand, within EX31_RS01465at 330.844 kb on - strand, within EX31_RS01465at 331.251 kb on + strand, within EX31_RS01465at 331.251 kb on + strand, within EX31_RS01465at 331.251 kb on + strand, within EX31_RS01465at 331.251 kb on + strand, within EX31_RS01465at 331.251 kb on + strand, within EX31_RS01465at 331.251 kb on + strand, within EX31_RS01465at 331.251 kb on + strand, within EX31_RS01465at 331.251 kb on + strand, within EX31_RS01465at 331.251 kb on + strand, within EX31_RS01465at 331.251 kb on + strand, within EX31_RS01465at 331.251 kb on + strand, within EX31_RS01465at 331.251 kb on + strand, within EX31_RS01465at 331.251 kb on + strand, within EX31_RS01465at 331.251 kb on + strand, within EX31_RS01465at 331.252 kb on - strand, within EX31_RS01465at 331.334 kb on + strand, within EX31_RS01465at 331.335 kb on - strand, within EX31_RS01465at 331.433 kb on + strand, within EX31_RS01465at 331.459 kb on - strand, within EX31_RS01465at 331.506 kb on - strand, within EX31_RS01465at 331.506 kb on - strand, within EX31_RS01465at 331.603 kb on - strandat 331.623 kb on + strandat 331.624 kb on - strandat 331.682 kb on + strandat 331.682 kb on + strandat 331.683 kb on - strandat 331.683 kb on - strandat 331.698 kb on - strandat 331.777 kb on - strand, within EX31_RS01470at 331.833 kb on + strand, within EX31_RS01470at 331.833 kb on + strand, within EX31_RS01470at 331.833 kb on + strand, within EX31_RS01470at 331.833 kb on + strand, within EX31_RS01470at 331.833 kb on + strand, within EX31_RS01470at 331.833 kb on + strand, within EX31_RS01470at 331.833 kb on + strand, within EX31_RS01470at 331.833 kb on + strand, within EX31_RS01470at 331.833 kb on + strand, within EX31_RS01470at 331.833 kb on + strand, within EX31_RS01470at 331.833 kb on + strand, within EX31_RS01470at 331.833 kb on + strand, within EX31_RS01470at 331.833 kb on + strand, within EX31_RS01470at 331.833 kb on + strand, within EX31_RS01470at 331.833 kb on + strand, within EX31_RS01470at 331.833 kb on + strand, within EX31_RS01470at 331.833 kb on + strand, within EX31_RS01470at 331.834 kb on - strand, within EX31_RS01470at 331.834 kb on - strand, within EX31_RS01470at 331.834 kb on - strand, within EX31_RS01470at 331.834 kb on - strand, within EX31_RS01470at 331.834 kb on - strand, within EX31_RS01470at 331.854 kb on - strand, within EX31_RS01470at 331.886 kb on - strand, within EX31_RS01470at 331.886 kb on - strand, within EX31_RS01470at 331.905 kb on + strand, within EX31_RS01470at 331.905 kb on + strand, within EX31_RS01470at 331.906 kb on - strand, within EX31_RS01470at 331.917 kb on + strand, within EX31_RS01470at 331.917 kb on + strand, within EX31_RS01470at 331.917 kb on + strand, within EX31_RS01470at 331.918 kb on - strand, within EX31_RS01470at 331.918 kb on - strand, within EX31_RS01470at 331.996 kb on - strandat 332.011 kb on + strandat 332.011 kb on + strandat 332.199 kb on - strand, within EX31_RS01475at 332.210 kb on - strand, within EX31_RS01475at 332.210 kb on - strand, within EX31_RS01475at 332.427 kb on + strand, within EX31_RS01475at 332.427 kb on + strand, within EX31_RS01475at 332.427 kb on + strand, within EX31_RS01475at 332.428 kb on - strand, within EX31_RS01475at 332.457 kb on + strand, within EX31_RS01475at 332.458 kb on - strand, within EX31_RS01475at 332.521 kb on - strand, within EX31_RS01475at 332.561 kb on + strand, within EX31_RS01475at 332.561 kb on + strand, within EX31_RS01475at 332.561 kb on + strand, within EX31_RS01475at 332.561 kb on + strand, within EX31_RS01475at 332.561 kb on + strand, within EX31_RS01475at 332.561 kb on + strand, within EX31_RS01475at 332.562 kb on - strand, within EX31_RS01475at 332.562 kb on - strand, within EX31_RS01475at 332.562 kb on - strand, within EX31_RS01475at 332.562 kb on - strand, within EX31_RS01475at 332.562 kb on - strand, within EX31_RS01475at 332.562 kb on - strand, within EX31_RS01475

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); RCH2 media; no shaking
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329,550 + EX31_RS01460 0.57 +1.1
329,550 + EX31_RS01460 0.57 -0.6
329,646 - EX31_RS01460 0.63 -2.5
329,681 - EX31_RS01460 0.65 +2.1
329,681 - EX31_RS01460 0.65 +0.6
329,681 - EX31_RS01460 0.65 +1.1
329,702 - EX31_RS01460 0.67 +0.4
329,762 - EX31_RS01460 0.71 +0.1
329,762 - EX31_RS01460 0.71 +1.3
329,839 + EX31_RS01460 0.76 +1.4
329,840 - EX31_RS01460 0.76 +1.1
329,840 - EX31_RS01460 0.76 -0.2
329,840 - EX31_RS01460 0.76 -0.2
329,840 - EX31_RS01460 0.76 +0.3
329,840 - EX31_RS01460 0.76 +0.0
329,840 - EX31_RS01460 0.76 -0.8
329,840 - EX31_RS01460 0.76 +0.2
329,840 - EX31_RS01460 0.76 -1.4
329,840 - EX31_RS01460 0.76 +0.2
330,152 - +0.5
330,170 - -0.7
330,204 + -0.4
330,205 - +0.4
330,205 - -0.1
330,205 - -0.8
330,223 - -0.9
330,223 - -0.0
330,264 - +1.0
330,276 + -0.5
330,277 - +0.5
330,293 + -1.0
330,298 + +0.8
330,298 + -0.2
330,298 + -0.2
330,298 + -0.4
330,298 + +1.1
330,298 + -1.2
330,299 - +0.7
330,299 - -0.2
330,299 - +0.2
330,299 - -0.3
330,299 - -1.2
330,299 - +0.0
330,299 - +1.1
330,299 - -0.2
330,299 - +0.5
330,299 - -1.0
330,299 - -0.2
330,299 - +0.1
330,299 - -1.1
330,299 - -0.5
330,299 - -0.3
330,299 - +0.9
330,299 - -1.3
330,299 - -0.1
330,299 - -0.5
330,299 - -2.1
330,299 - +0.9
330,300 + -0.5
330,301 - -0.9
330,306 + +2.0
330,307 - -1.1
330,309 - +1.1
330,309 - +1.0
330,309 - -0.9
330,309 - -0.8
330,309 - -0.3
330,309 - +0.5
330,309 - +0.7
330,309 - +0.5
330,319 + +1.0
330,320 - +0.2
330,320 - -0.4
330,476 - +2.1
330,601 - +1.3
330,601 - +1.1
330,675 + EX31_RS01465 0.15 +0.6
330,676 - EX31_RS01465 0.16 +0.1
330,679 - EX31_RS01465 0.16 -0.8
330,679 - EX31_RS01465 0.16 +0.1
330,679 - EX31_RS01465 0.16 +1.1
330,771 + EX31_RS01465 0.24 -0.2
330,771 + EX31_RS01465 0.24 +0.8
330,778 - EX31_RS01465 0.24 -1.2
330,780 + EX31_RS01465 0.24 +1.2
330,781 - EX31_RS01465 0.24 +0.4
330,798 - EX31_RS01465 0.26 +0.6
330,811 + EX31_RS01465 0.27 -1.1
330,844 - EX31_RS01465 0.30 -0.6
330,844 - EX31_RS01465 0.30 -0.5
331,251 + EX31_RS01465 0.64 +1.6
331,251 + EX31_RS01465 0.64 +0.7
331,251 + EX31_RS01465 0.64 +0.3
331,251 + EX31_RS01465 0.64 +0.5
331,251 + EX31_RS01465 0.64 +1.5
331,251 + EX31_RS01465 0.64 +0.5
331,251 + EX31_RS01465 0.64 +1.0
331,251 + EX31_RS01465 0.64 -1.1
331,251 + EX31_RS01465 0.64 -1.5
331,251 + EX31_RS01465 0.64 +1.0
331,251 + EX31_RS01465 0.64 +0.0
331,251 + EX31_RS01465 0.64 +0.5
331,251 + EX31_RS01465 0.64 +1.4
331,251 + EX31_RS01465 0.64 +1.5
331,252 - EX31_RS01465 0.64 +1.1
331,334 + EX31_RS01465 0.71 -0.2
331,335 - EX31_RS01465 0.71 +1.7
331,433 + EX31_RS01465 0.80 +1.3
331,459 - EX31_RS01465 0.82 +0.4
331,506 - EX31_RS01465 0.86 +1.2
331,506 - EX31_RS01465 0.86 +0.5
331,603 - -0.1
331,623 + +2.1
331,624 - +0.8
331,682 + +0.2
331,682 + +0.8
331,683 - +0.7
331,683 - +0.1
331,698 - +0.6
331,777 - EX31_RS01470 0.31 -1.1
331,833 + EX31_RS01470 0.49 -1.7
331,833 + EX31_RS01470 0.49 +1.4
331,833 + EX31_RS01470 0.49 +0.3
331,833 + EX31_RS01470 0.49 +1.7
331,833 + EX31_RS01470 0.49 +1.1
331,833 + EX31_RS01470 0.49 +0.2
331,833 + EX31_RS01470 0.49 +1.2
331,833 + EX31_RS01470 0.49 +0.5
331,833 + EX31_RS01470 0.49 +0.3
331,833 + EX31_RS01470 0.49 +0.7
331,833 + EX31_RS01470 0.49 +0.1
331,833 + EX31_RS01470 0.49 +0.7
331,833 + EX31_RS01470 0.49 +0.2
331,833 + EX31_RS01470 0.49 +0.2
331,833 + EX31_RS01470 0.49 +0.6
331,833 + EX31_RS01470 0.49 -0.6
331,833 + EX31_RS01470 0.49 -1.0
331,834 - EX31_RS01470 0.49 -0.6
331,834 - EX31_RS01470 0.49 +0.3
331,834 - EX31_RS01470 0.49 +0.0
331,834 - EX31_RS01470 0.49 -0.5
331,834 - EX31_RS01470 0.49 -0.9
331,854 - EX31_RS01470 0.55 -0.2
331,886 - EX31_RS01470 0.65 +0.5
331,886 - EX31_RS01470 0.65 +1.0
331,905 + EX31_RS01470 0.71 -0.6
331,905 + EX31_RS01470 0.71 +0.1
331,906 - EX31_RS01470 0.71 +1.1
331,917 + EX31_RS01470 0.75 -0.5
331,917 + EX31_RS01470 0.75 +0.8
331,917 + EX31_RS01470 0.75 +1.8
331,918 - EX31_RS01470 0.75 -0.5
331,918 - EX31_RS01470 0.75 +0.5
331,996 - +0.5
332,011 + +0.6
332,011 + -0.5
332,199 - EX31_RS01475 0.21 +0.8
332,210 - EX31_RS01475 0.23 +1.5
332,210 - EX31_RS01475 0.23 +0.7
332,427 + EX31_RS01475 0.57 -2.7
332,427 + EX31_RS01475 0.57 +2.1
332,427 + EX31_RS01475 0.57 -0.8
332,428 - EX31_RS01475 0.57 +1.1
332,457 + EX31_RS01475 0.61 +1.3
332,458 - EX31_RS01475 0.62 -1.6
332,521 - EX31_RS01475 0.71 +0.5
332,561 + EX31_RS01475 0.78 +0.5
332,561 + EX31_RS01475 0.78 +1.6
332,561 + EX31_RS01475 0.78 -0.4
332,561 + EX31_RS01475 0.78 +1.4
332,561 + EX31_RS01475 0.78 +0.6
332,561 + EX31_RS01475 0.78 +0.5
332,562 - EX31_RS01475 0.78 -0.2
332,562 - EX31_RS01475 0.78 +0.3
332,562 - EX31_RS01475 0.78 -0.7
332,562 - EX31_RS01475 0.78 -0.0
332,562 - EX31_RS01475 0.78 -1.8
332,562 - EX31_RS01475 0.78 +1.1

Or see this region's nucleotide sequence