Strain Fitness in Rahnella sp. WP5 around EX31_RS01105

Experiment: L-Glutamine (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01095 and EX31_RS01100 are separated by 139 nucleotidesEX31_RS01100 and EX31_RS01105 are separated by 166 nucleotidesEX31_RS01105 and EX31_RS01110 are separated by 943 nucleotides EX31_RS01095: EX31_RS01095 - metal ABC transporter permease, at 237,908 to 238,762 _RS01095 EX31_RS01100: EX31_RS01100 - hypothetical protein, at 238,902 to 239,081 _RS01100 EX31_RS01105: EX31_RS01105 - tryptophan permease, at 239,248 to 240,492 _RS01105 EX31_RS01110: EX31_RS01110 - hypothetical protein, at 241,436 to 242,170 _RS01110 Position (kb) 239 240 241Strain fitness (log2 ratio) -2 -1 0 1 2at 238.434 kb on + strand, within EX31_RS01095at 238.448 kb on + strand, within EX31_RS01095at 238.449 kb on - strand, within EX31_RS01095at 238.462 kb on + strand, within EX31_RS01095at 238.462 kb on + strand, within EX31_RS01095at 238.462 kb on + strand, within EX31_RS01095at 238.462 kb on + strand, within EX31_RS01095at 238.462 kb on + strand, within EX31_RS01095at 238.462 kb on + strand, within EX31_RS01095at 238.463 kb on - strand, within EX31_RS01095at 238.640 kb on + strand, within EX31_RS01095at 238.640 kb on + strand, within EX31_RS01095at 238.640 kb on + strand, within EX31_RS01095at 238.640 kb on + strand, within EX31_RS01095at 238.641 kb on - strand, within EX31_RS01095at 238.641 kb on - strand, within EX31_RS01095at 238.641 kb on - strand, within EX31_RS01095at 238.641 kb on - strand, within EX31_RS01095at 238.642 kb on + strand, within EX31_RS01095at 238.642 kb on + strand, within EX31_RS01095at 238.756 kb on + strandat 238.760 kb on + strandat 238.760 kb on + strandat 238.760 kb on + strandat 238.841 kb on - strandat 238.884 kb on + strandat 238.884 kb on + strandat 238.885 kb on - strandat 238.901 kb on + strandat 238.901 kb on + strandat 238.901 kb on + strandat 238.901 kb on + strandat 239.073 kb on - strandat 239.079 kb on + strandat 239.117 kb on + strandat 239.189 kb on - strandat 239.189 kb on - strandat 239.191 kb on - strandat 239.191 kb on - strandat 239.191 kb on - strandat 239.196 kb on - strandat 239.258 kb on - strandat 239.273 kb on - strandat 239.337 kb on + strandat 239.358 kb on - strandat 239.358 kb on - strandat 239.461 kb on - strand, within EX31_RS01105at 239.475 kb on - strand, within EX31_RS01105at 239.571 kb on - strand, within EX31_RS01105at 239.698 kb on - strand, within EX31_RS01105at 239.698 kb on - strand, within EX31_RS01105at 239.698 kb on - strand, within EX31_RS01105at 239.774 kb on + strand, within EX31_RS01105at 239.774 kb on + strand, within EX31_RS01105at 239.775 kb on - strand, within EX31_RS01105at 239.775 kb on - strand, within EX31_RS01105at 239.775 kb on - strand, within EX31_RS01105at 239.775 kb on - strand, within EX31_RS01105at 239.775 kb on - strand, within EX31_RS01105at 239.791 kb on - strand, within EX31_RS01105at 239.844 kb on - strand, within EX31_RS01105at 239.861 kb on - strand, within EX31_RS01105at 239.915 kb on + strand, within EX31_RS01105at 239.915 kb on + strand, within EX31_RS01105at 239.916 kb on - strand, within EX31_RS01105at 239.916 kb on - strand, within EX31_RS01105at 239.916 kb on - strand, within EX31_RS01105at 239.916 kb on - strand, within EX31_RS01105at 239.916 kb on - strand, within EX31_RS01105at 239.916 kb on - strand, within EX31_RS01105at 239.916 kb on - strand, within EX31_RS01105at 239.916 kb on - strand, within EX31_RS01105at 239.916 kb on - strand, within EX31_RS01105at 239.916 kb on - strand, within EX31_RS01105at 239.916 kb on - strand, within EX31_RS01105at 239.924 kb on + strand, within EX31_RS01105at 239.924 kb on + strand, within EX31_RS01105at 239.924 kb on + strand, within EX31_RS01105at 239.924 kb on + strand, within EX31_RS01105at 239.924 kb on + strand, within EX31_RS01105at 239.925 kb on - strand, within EX31_RS01105at 239.980 kb on + strand, within EX31_RS01105at 239.981 kb on - strand, within EX31_RS01105at 239.981 kb on - strand, within EX31_RS01105at 239.981 kb on - strand, within EX31_RS01105at 240.145 kb on - strand, within EX31_RS01105at 240.145 kb on - strand, within EX31_RS01105at 240.145 kb on - strand, within EX31_RS01105at 240.145 kb on - strand, within EX31_RS01105at 240.174 kb on + strand, within EX31_RS01105at 240.175 kb on - strand, within EX31_RS01105at 240.175 kb on - strand, within EX31_RS01105at 240.175 kb on - strand, within EX31_RS01105at 240.176 kb on + strand, within EX31_RS01105at 240.176 kb on + strand, within EX31_RS01105at 240.176 kb on + strand, within EX31_RS01105at 240.176 kb on + strand, within EX31_RS01105at 240.182 kb on + strand, within EX31_RS01105at 240.182 kb on + strand, within EX31_RS01105at 240.182 kb on + strand, within EX31_RS01105at 240.182 kb on + strand, within EX31_RS01105at 240.183 kb on - strand, within EX31_RS01105at 240.183 kb on - strand, within EX31_RS01105at 240.183 kb on - strand, within EX31_RS01105at 240.183 kb on - strand, within EX31_RS01105at 240.183 kb on - strand, within EX31_RS01105at 240.183 kb on - strand, within EX31_RS01105at 240.183 kb on - strand, within EX31_RS01105at 240.194 kb on + strand, within EX31_RS01105at 240.194 kb on + strand, within EX31_RS01105at 240.195 kb on - strand, within EX31_RS01105at 240.195 kb on - strand, within EX31_RS01105at 240.195 kb on - strand, within EX31_RS01105at 240.195 kb on - strand, within EX31_RS01105at 240.195 kb on - strand, within EX31_RS01105at 240.268 kb on - strand, within EX31_RS01105at 240.281 kb on - strand, within EX31_RS01105at 240.287 kb on + strand, within EX31_RS01105at 240.291 kb on + strand, within EX31_RS01105at 240.291 kb on + strand, within EX31_RS01105at 240.292 kb on - strand, within EX31_RS01105at 240.292 kb on - strand, within EX31_RS01105at 240.292 kb on - strand, within EX31_RS01105at 240.292 kb on - strand, within EX31_RS01105at 240.331 kb on - strand, within EX31_RS01105at 240.331 kb on - strand, within EX31_RS01105at 240.423 kb on + strandat 240.423 kb on + strandat 240.423 kb on + strandat 240.424 kb on - strandat 240.424 kb on - strandat 240.455 kb on - strandat 240.492 kb on + strandat 240.530 kb on - strandat 240.584 kb on - strandat 240.614 kb on + strandat 240.614 kb on + strandat 240.614 kb on + strandat 240.614 kb on + strandat 240.615 kb on - strandat 240.615 kb on - strandat 240.615 kb on - strandat 240.669 kb on + strandat 240.669 kb on + strandat 240.744 kb on + strandat 240.864 kb on + strandat 240.865 kb on - strandat 240.901 kb on + strandat 240.940 kb on + strandat 240.940 kb on + strandat 240.940 kb on + strandat 240.967 kb on + strandat 240.972 kb on + strandat 241.004 kb on + strandat 241.093 kb on + strandat 241.125 kb on + strandat 241.177 kb on + strandat 241.179 kb on + strandat 241.179 kb on + strandat 241.179 kb on + strandat 241.179 kb on + strandat 241.179 kb on + strandat 241.197 kb on + strandat 241.226 kb on + strandat 241.226 kb on + strandat 241.266 kb on + strandat 241.312 kb on + strandat 241.312 kb on + strandat 241.333 kb on + strandat 241.333 kb on + strandat 241.359 kb on + strandat 241.374 kb on + strandat 241.382 kb on + strandat 241.438 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); RCH2 media; no shaking
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238,434 + EX31_RS01095 0.62 -0.3
238,448 + EX31_RS01095 0.63 +1.7
238,449 - EX31_RS01095 0.63 +0.3
238,462 + EX31_RS01095 0.65 -1.7
238,462 + EX31_RS01095 0.65 +1.3
238,462 + EX31_RS01095 0.65 -0.6
238,462 + EX31_RS01095 0.65 +0.6
238,462 + EX31_RS01095 0.65 +0.0
238,462 + EX31_RS01095 0.65 -1.1
238,463 - EX31_RS01095 0.65 +0.2
238,640 + EX31_RS01095 0.86 -1.6
238,640 + EX31_RS01095 0.86 +1.7
238,640 + EX31_RS01095 0.86 +1.3
238,640 + EX31_RS01095 0.86 +0.1
238,641 - EX31_RS01095 0.86 +2.6
238,641 - EX31_RS01095 0.86 -1.1
238,641 - EX31_RS01095 0.86 +0.1
238,641 - EX31_RS01095 0.86 -0.2
238,642 + EX31_RS01095 0.86 +0.9
238,642 + EX31_RS01095 0.86 -0.0
238,756 + +1.2
238,760 + +0.8
238,760 + -0.4
238,760 + +1.4
238,841 - -1.1
238,884 + +1.8
238,884 + -1.5
238,885 - +1.6
238,901 + +0.1
238,901 + +0.7
238,901 + +2.1
238,901 + +0.3
239,073 - +0.1
239,079 + +0.1
239,117 + +0.8
239,189 - +1.5
239,189 - -0.8
239,191 - -1.2
239,191 - +0.8
239,191 - -0.9
239,196 - -0.4
239,258 - +0.7
239,273 - +0.5
239,337 + -2.4
239,358 - -0.3
239,358 - +0.8
239,461 - EX31_RS01105 0.17 +1.0
239,475 - EX31_RS01105 0.18 -1.2
239,571 - EX31_RS01105 0.26 +0.8
239,698 - EX31_RS01105 0.36 +1.7
239,698 - EX31_RS01105 0.36 +1.4
239,698 - EX31_RS01105 0.36 +0.0
239,774 + EX31_RS01105 0.42 +1.1
239,774 + EX31_RS01105 0.42 -1.2
239,775 - EX31_RS01105 0.42 +1.2
239,775 - EX31_RS01105 0.42 -2.2
239,775 - EX31_RS01105 0.42 +0.5
239,775 - EX31_RS01105 0.42 +0.5
239,775 - EX31_RS01105 0.42 -0.1
239,791 - EX31_RS01105 0.44 -1.1
239,844 - EX31_RS01105 0.48 -0.4
239,861 - EX31_RS01105 0.49 -0.1
239,915 + EX31_RS01105 0.54 +1.2
239,915 + EX31_RS01105 0.54 +0.1
239,916 - EX31_RS01105 0.54 -0.9
239,916 - EX31_RS01105 0.54 +0.5
239,916 - EX31_RS01105 0.54 +0.1
239,916 - EX31_RS01105 0.54 +0.5
239,916 - EX31_RS01105 0.54 -1.8
239,916 - EX31_RS01105 0.54 -0.2
239,916 - EX31_RS01105 0.54 -1.1
239,916 - EX31_RS01105 0.54 +0.1
239,916 - EX31_RS01105 0.54 -0.2
239,916 - EX31_RS01105 0.54 -0.1
239,916 - EX31_RS01105 0.54 -1.3
239,924 + EX31_RS01105 0.54 +0.5
239,924 + EX31_RS01105 0.54 -0.2
239,924 + EX31_RS01105 0.54 -2.2
239,924 + EX31_RS01105 0.54 +0.5
239,924 + EX31_RS01105 0.54 -0.9
239,925 - EX31_RS01105 0.54 -1.2
239,980 + EX31_RS01105 0.59 +1.1
239,981 - EX31_RS01105 0.59 +0.2
239,981 - EX31_RS01105 0.59 +0.6
239,981 - EX31_RS01105 0.59 -0.6
240,145 - EX31_RS01105 0.72 -0.4
240,145 - EX31_RS01105 0.72 +1.4
240,145 - EX31_RS01105 0.72 -0.6
240,145 - EX31_RS01105 0.72 -0.6
240,174 + EX31_RS01105 0.74 +0.5
240,175 - EX31_RS01105 0.74 -0.4
240,175 - EX31_RS01105 0.74 -0.9
240,175 - EX31_RS01105 0.74 +0.7
240,176 + EX31_RS01105 0.75 +0.2
240,176 + EX31_RS01105 0.75 +1.2
240,176 + EX31_RS01105 0.75 +2.1
240,176 + EX31_RS01105 0.75 +0.3
240,182 + EX31_RS01105 0.75 -0.2
240,182 + EX31_RS01105 0.75 +0.4
240,182 + EX31_RS01105 0.75 -1.1
240,182 + EX31_RS01105 0.75 -0.3
240,183 - EX31_RS01105 0.75 -0.5
240,183 - EX31_RS01105 0.75 -0.1
240,183 - EX31_RS01105 0.75 -0.9
240,183 - EX31_RS01105 0.75 +0.3
240,183 - EX31_RS01105 0.75 +0.9
240,183 - EX31_RS01105 0.75 +0.2
240,183 - EX31_RS01105 0.75 +0.2
240,194 + EX31_RS01105 0.76 -0.2
240,194 + EX31_RS01105 0.76 -0.4
240,195 - EX31_RS01105 0.76 +0.5
240,195 - EX31_RS01105 0.76 +0.2
240,195 - EX31_RS01105 0.76 -1.5
240,195 - EX31_RS01105 0.76 +1.0
240,195 - EX31_RS01105 0.76 +0.4
240,268 - EX31_RS01105 0.82 -0.1
240,281 - EX31_RS01105 0.83 -1.5
240,287 + EX31_RS01105 0.83 -1.4
240,291 + EX31_RS01105 0.84 -0.0
240,291 + EX31_RS01105 0.84 +0.9
240,292 - EX31_RS01105 0.84 -1.0
240,292 - EX31_RS01105 0.84 -0.2
240,292 - EX31_RS01105 0.84 +0.8
240,292 - EX31_RS01105 0.84 +0.1
240,331 - EX31_RS01105 0.87 +0.1
240,331 - EX31_RS01105 0.87 +1.0
240,423 + -1.3
240,423 + +0.9
240,423 + -0.4
240,424 - -0.2
240,424 - +0.3
240,455 - +1.8
240,492 + -0.7
240,530 - -0.5
240,584 - -0.1
240,614 + +2.1
240,614 + +2.1
240,614 + +0.0
240,614 + +1.1
240,615 - +0.5
240,615 - -2.5
240,615 - +0.1
240,669 + +1.2
240,669 + +0.5
240,744 + +0.8
240,864 + -1.2
240,865 - -0.5
240,901 + -0.6
240,940 + +0.8
240,940 + +0.6
240,940 + +0.3
240,967 + -0.7
240,972 + +0.8
241,004 + -0.8
241,093 + +0.7
241,125 + +0.2
241,177 + -0.4
241,179 + -1.1
241,179 + -0.1
241,179 + +0.3
241,179 + -2.5
241,179 + -0.9
241,197 + -1.0
241,226 + -0.9
241,226 + -2.7
241,266 + +0.1
241,312 + -0.8
241,312 + -0.2
241,333 + -1.5
241,333 + +0.7
241,359 + -0.3
241,374 + -0.2
241,382 + +0.2
241,438 - +2.3

Or see this region's nucleotide sequence