Strain Fitness in Rahnella sp. WP5 around EX31_RS00175

Experiment: L-Glutamine (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS00170 and EX31_RS25880 are separated by 143 nucleotidesEX31_RS25880 and EX31_RS00175 are separated by 278 nucleotidesEX31_RS00175 and EX31_RS00180 are separated by 132 nucleotides EX31_RS00170: EX31_RS00170 - DUF1471 domain-containing protein, at 35,737 to 36,042 _RS00170 EX31_RS25880: EX31_RS25880 - hypothetical protein, at 36,186 to 36,407 _RS25880 EX31_RS00175: EX31_RS00175 - membrane protein, at 36,686 to 37,963 _RS00175 EX31_RS00180: EX31_RS00180 - aldehyde dehydrogenase family protein, at 38,096 to 39,481 _RS00180 Position (kb) 36 37 38Strain fitness (log2 ratio) -2 -1 0 1 2at 35.712 kb on - strandat 35.712 kb on - strandat 35.744 kb on + strandat 35.769 kb on - strand, within EX31_RS00170at 35.769 kb on - strand, within EX31_RS00170at 35.769 kb on - strand, within EX31_RS00170at 35.769 kb on - strand, within EX31_RS00170at 36.017 kb on - strandat 36.126 kb on + strandat 36.127 kb on - strandat 36.165 kb on - strandat 36.219 kb on + strand, within EX31_RS25880at 36.266 kb on - strand, within EX31_RS25880at 36.266 kb on - strand, within EX31_RS25880at 36.266 kb on - strand, within EX31_RS25880at 36.266 kb on - strand, within EX31_RS25880at 36.266 kb on - strand, within EX31_RS25880at 36.315 kb on + strand, within EX31_RS25880at 36.315 kb on + strand, within EX31_RS25880at 36.372 kb on - strand, within EX31_RS25880at 36.372 kb on - strand, within EX31_RS25880at 36.372 kb on - strand, within EX31_RS25880at 36.372 kb on - strand, within EX31_RS25880at 36.372 kb on - strand, within EX31_RS25880at 36.437 kb on + strandat 36.437 kb on + strandat 36.437 kb on + strandat 36.438 kb on - strandat 36.438 kb on - strandat 36.438 kb on - strandat 36.438 kb on - strandat 36.438 kb on - strandat 36.438 kb on - strandat 36.438 kb on - strandat 36.438 kb on - strandat 36.459 kb on - strandat 36.481 kb on - strandat 36.481 kb on - strandat 36.481 kb on - strandat 36.662 kb on - strandat 36.663 kb on + strandat 36.724 kb on + strandat 36.757 kb on - strandat 36.757 kb on - strandat 36.774 kb on + strandat 36.818 kb on - strand, within EX31_RS00175at 36.892 kb on + strand, within EX31_RS00175at 36.986 kb on - strand, within EX31_RS00175at 36.995 kb on - strand, within EX31_RS00175at 36.995 kb on - strand, within EX31_RS00175at 36.997 kb on + strand, within EX31_RS00175at 37.030 kb on + strand, within EX31_RS00175at 37.061 kb on - strand, within EX31_RS00175at 37.102 kb on + strand, within EX31_RS00175at 37.102 kb on + strand, within EX31_RS00175at 37.102 kb on + strand, within EX31_RS00175at 37.102 kb on + strand, within EX31_RS00175at 37.103 kb on - strand, within EX31_RS00175at 37.103 kb on - strand, within EX31_RS00175at 37.103 kb on - strand, within EX31_RS00175at 37.103 kb on - strand, within EX31_RS00175at 37.106 kb on + strand, within EX31_RS00175at 37.106 kb on + strand, within EX31_RS00175at 37.107 kb on - strand, within EX31_RS00175at 37.107 kb on - strand, within EX31_RS00175at 37.107 kb on - strand, within EX31_RS00175at 37.107 kb on - strand, within EX31_RS00175at 37.110 kb on - strand, within EX31_RS00175at 37.120 kb on + strand, within EX31_RS00175at 37.121 kb on - strand, within EX31_RS00175at 37.233 kb on + strand, within EX31_RS00175at 37.233 kb on + strand, within EX31_RS00175at 37.241 kb on + strand, within EX31_RS00175at 37.241 kb on + strand, within EX31_RS00175at 37.241 kb on + strand, within EX31_RS00175at 37.242 kb on - strand, within EX31_RS00175at 37.243 kb on + strand, within EX31_RS00175at 37.243 kb on + strand, within EX31_RS00175at 37.243 kb on + strand, within EX31_RS00175at 37.244 kb on - strand, within EX31_RS00175at 37.256 kb on + strand, within EX31_RS00175at 37.256 kb on + strand, within EX31_RS00175at 37.257 kb on - strand, within EX31_RS00175at 37.258 kb on + strand, within EX31_RS00175at 37.280 kb on - strand, within EX31_RS00175at 37.356 kb on + strand, within EX31_RS00175at 37.357 kb on - strand, within EX31_RS00175at 37.380 kb on + strand, within EX31_RS00175at 37.380 kb on + strand, within EX31_RS00175at 37.390 kb on - strand, within EX31_RS00175at 37.390 kb on - strand, within EX31_RS00175at 37.433 kb on + strand, within EX31_RS00175at 37.433 kb on + strand, within EX31_RS00175at 37.459 kb on + strand, within EX31_RS00175at 37.471 kb on + strand, within EX31_RS00175at 37.534 kb on - strand, within EX31_RS00175at 37.551 kb on + strand, within EX31_RS00175at 37.627 kb on + strand, within EX31_RS00175at 37.687 kb on + strand, within EX31_RS00175at 37.747 kb on + strand, within EX31_RS00175at 37.820 kb on - strand, within EX31_RS00175at 37.836 kb on + strandat 37.836 kb on + strandat 37.837 kb on - strandat 37.837 kb on - strandat 37.842 kb on + strandat 37.843 kb on - strandat 37.843 kb on - strandat 37.846 kb on - strandat 37.846 kb on - strandat 37.957 kb on + strandat 37.957 kb on + strandat 38.098 kb on - strandat 38.101 kb on + strandat 38.101 kb on + strandat 38.102 kb on - strandat 38.102 kb on - strandat 38.231 kb on - strandat 38.231 kb on - strandat 38.231 kb on - strandat 38.231 kb on - strandat 38.234 kb on + strandat 38.235 kb on - strand, within EX31_RS00180at 38.235 kb on - strand, within EX31_RS00180at 38.235 kb on - strand, within EX31_RS00180at 38.235 kb on - strand, within EX31_RS00180at 38.292 kb on + strand, within EX31_RS00180at 38.387 kb on + strand, within EX31_RS00180at 38.388 kb on - strand, within EX31_RS00180at 38.388 kb on - strand, within EX31_RS00180at 38.388 kb on - strand, within EX31_RS00180at 38.435 kb on - strand, within EX31_RS00180at 38.445 kb on + strand, within EX31_RS00180at 38.445 kb on + strand, within EX31_RS00180at 38.446 kb on - strand, within EX31_RS00180at 38.449 kb on - strand, within EX31_RS00180at 38.568 kb on + strand, within EX31_RS00180at 38.568 kb on + strand, within EX31_RS00180at 38.569 kb on - strand, within EX31_RS00180at 38.569 kb on - strand, within EX31_RS00180at 38.569 kb on - strand, within EX31_RS00180at 38.569 kb on - strand, within EX31_RS00180at 38.569 kb on - strand, within EX31_RS00180at 38.569 kb on - strand, within EX31_RS00180at 38.569 kb on - strand, within EX31_RS00180at 38.569 kb on - strand, within EX31_RS00180at 38.569 kb on - strand, within EX31_RS00180at 38.665 kb on + strand, within EX31_RS00180at 38.666 kb on - strand, within EX31_RS00180at 38.666 kb on - strand, within EX31_RS00180at 38.666 kb on - strand, within EX31_RS00180at 38.666 kb on - strand, within EX31_RS00180at 38.696 kb on - strand, within EX31_RS00180at 38.761 kb on + strand, within EX31_RS00180at 38.761 kb on + strand, within EX31_RS00180at 38.762 kb on - strand, within EX31_RS00180at 38.762 kb on - strand, within EX31_RS00180at 38.917 kb on + strand, within EX31_RS00180

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); RCH2 media; no shaking
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35,712 - +0.8
35,712 - -0.1
35,744 + -0.5
35,769 - EX31_RS00170 0.10 -0.6
35,769 - EX31_RS00170 0.10 +0.6
35,769 - EX31_RS00170 0.10 -1.2
35,769 - EX31_RS00170 0.10 -0.3
36,017 - -0.0
36,126 + -1.0
36,127 - +1.3
36,165 - +0.5
36,219 + EX31_RS25880 0.15 +0.5
36,266 - EX31_RS25880 0.36 +0.3
36,266 - EX31_RS25880 0.36 +0.0
36,266 - EX31_RS25880 0.36 -0.8
36,266 - EX31_RS25880 0.36 -1.0
36,266 - EX31_RS25880 0.36 -0.5
36,315 + EX31_RS25880 0.58 +0.5
36,315 + EX31_RS25880 0.58 +0.5
36,372 - EX31_RS25880 0.84 -0.6
36,372 - EX31_RS25880 0.84 -1.7
36,372 - EX31_RS25880 0.84 +1.4
36,372 - EX31_RS25880 0.84 +1.2
36,372 - EX31_RS25880 0.84 +0.5
36,437 + +0.0
36,437 + +0.3
36,437 + -0.5
36,438 - -0.1
36,438 - +0.9
36,438 - +1.7
36,438 - +2.2
36,438 - -0.5
36,438 - +0.6
36,438 - +1.3
36,438 - +1.0
36,459 - +1.3
36,481 - +0.5
36,481 - +0.9
36,481 - +0.2
36,662 - -1.4
36,663 + -0.2
36,724 + +0.7
36,757 - +1.0
36,757 - -1.3
36,774 + -1.9
36,818 - EX31_RS00175 0.10 +0.0
36,892 + EX31_RS00175 0.16 +0.5
36,986 - EX31_RS00175 0.23 -0.2
36,995 - EX31_RS00175 0.24 +2.3
36,995 - EX31_RS00175 0.24 +0.2
36,997 + EX31_RS00175 0.24 -0.8
37,030 + EX31_RS00175 0.27 +1.5
37,061 - EX31_RS00175 0.29 -0.5
37,102 + EX31_RS00175 0.33 -1.0
37,102 + EX31_RS00175 0.33 -1.2
37,102 + EX31_RS00175 0.33 -2.3
37,102 + EX31_RS00175 0.33 +0.9
37,103 - EX31_RS00175 0.33 +0.2
37,103 - EX31_RS00175 0.33 +0.0
37,103 - EX31_RS00175 0.33 +1.0
37,103 - EX31_RS00175 0.33 -1.1
37,106 + EX31_RS00175 0.33 -0.5
37,106 + EX31_RS00175 0.33 -0.6
37,107 - EX31_RS00175 0.33 -1.1
37,107 - EX31_RS00175 0.33 +0.0
37,107 - EX31_RS00175 0.33 +1.0
37,107 - EX31_RS00175 0.33 +1.2
37,110 - EX31_RS00175 0.33 -1.2
37,120 + EX31_RS00175 0.34 +0.5
37,121 - EX31_RS00175 0.34 +0.3
37,233 + EX31_RS00175 0.43 -0.8
37,233 + EX31_RS00175 0.43 -0.1
37,241 + EX31_RS00175 0.43 -0.3
37,241 + EX31_RS00175 0.43 +1.0
37,241 + EX31_RS00175 0.43 +2.5
37,242 - EX31_RS00175 0.44 +0.1
37,243 + EX31_RS00175 0.44 +0.8
37,243 + EX31_RS00175 0.44 -0.0
37,243 + EX31_RS00175 0.44 +1.0
37,244 - EX31_RS00175 0.44 +0.3
37,256 + EX31_RS00175 0.45 +2.0
37,256 + EX31_RS00175 0.45 -0.5
37,257 - EX31_RS00175 0.45 -0.3
37,258 + EX31_RS00175 0.45 -0.2
37,280 - EX31_RS00175 0.46 +2.0
37,356 + EX31_RS00175 0.52 -0.3
37,357 - EX31_RS00175 0.53 -0.2
37,380 + EX31_RS00175 0.54 -0.2
37,380 + EX31_RS00175 0.54 -0.7
37,390 - EX31_RS00175 0.55 +0.4
37,390 - EX31_RS00175 0.55 +0.4
37,433 + EX31_RS00175 0.58 -0.8
37,433 + EX31_RS00175 0.58 -1.2
37,459 + EX31_RS00175 0.60 -0.3
37,471 + EX31_RS00175 0.61 +0.9
37,534 - EX31_RS00175 0.66 -1.5
37,551 + EX31_RS00175 0.68 +0.2
37,627 + EX31_RS00175 0.74 +0.2
37,687 + EX31_RS00175 0.78 -0.2
37,747 + EX31_RS00175 0.83 -1.7
37,820 - EX31_RS00175 0.89 -0.3
37,836 + +0.7
37,836 + -0.5
37,837 - -1.7
37,837 - +1.0
37,842 + +0.8
37,843 - +0.7
37,843 - +0.8
37,846 - +1.7
37,846 - +1.0
37,957 + +0.7
37,957 + +0.7
38,098 - +0.0
38,101 + +0.7
38,101 + -0.4
38,102 - +1.3
38,102 - +0.8
38,231 - +0.2
38,231 - +0.1
38,231 - +0.7
38,231 - -0.5
38,234 + -0.2
38,235 - EX31_RS00180 0.10 -0.7
38,235 - EX31_RS00180 0.10 -0.2
38,235 - EX31_RS00180 0.10 -1.1
38,235 - EX31_RS00180 0.10 -0.1
38,292 + EX31_RS00180 0.14 +0.4
38,387 + EX31_RS00180 0.21 -1.7
38,388 - EX31_RS00180 0.21 -0.4
38,388 - EX31_RS00180 0.21 +1.5
38,388 - EX31_RS00180 0.21 +0.2
38,435 - EX31_RS00180 0.24 -1.2
38,445 + EX31_RS00180 0.25 -0.7
38,445 + EX31_RS00180 0.25 +2.0
38,446 - EX31_RS00180 0.25 +1.6
38,449 - EX31_RS00180 0.25 +0.5
38,568 + EX31_RS00180 0.34 +0.0
38,568 + EX31_RS00180 0.34 -1.5
38,569 - EX31_RS00180 0.34 +0.8
38,569 - EX31_RS00180 0.34 -1.2
38,569 - EX31_RS00180 0.34 -1.3
38,569 - EX31_RS00180 0.34 +0.2
38,569 - EX31_RS00180 0.34 -0.2
38,569 - EX31_RS00180 0.34 -0.5
38,569 - EX31_RS00180 0.34 +0.6
38,569 - EX31_RS00180 0.34 -1.0
38,569 - EX31_RS00180 0.34 +0.0
38,665 + EX31_RS00180 0.41 +0.2
38,666 - EX31_RS00180 0.41 -0.1
38,666 - EX31_RS00180 0.41 +0.6
38,666 - EX31_RS00180 0.41 +0.2
38,666 - EX31_RS00180 0.41 -0.4
38,696 - EX31_RS00180 0.43 +0.6
38,761 + EX31_RS00180 0.48 -0.3
38,761 + EX31_RS00180 0.48 +1.7
38,762 - EX31_RS00180 0.48 -1.2
38,762 - EX31_RS00180 0.48 -0.3
38,917 + EX31_RS00180 0.59 -0.8

Or see this region's nucleotide sequence