Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03819

Experiment: Inosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03818 and CCNA_03819 are separated by 735 nucleotidesCCNA_03819 and CCNA_03820 are separated by 123 nucleotides CCNA_03818: CCNA_03818 - hypothetical protein, at 3,982,782 to 3,983,132 _03818 CCNA_03819: CCNA_03819 - cell division protein FtsK, at 3,983,868 to 3,986,345 _03819 CCNA_03820: CCNA_03820 - outer-membrane lipoproteins carrier protein, at 3,986,469 to 3,987,128 _03820 Position (kb) 3983 3984 3985 3986 3987Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3982.973 kb on + strand, within CCNA_03818at 3982.973 kb on + strand, within CCNA_03818at 3982.973 kb on + strand, within CCNA_03818at 3982.973 kb on + strand, within CCNA_03818at 3982.973 kb on + strand, within CCNA_03818at 3982.973 kb on + strand, within CCNA_03818at 3983.070 kb on - strand, within CCNA_03818at 3983.082 kb on + strand, within CCNA_03818at 3983.089 kb on - strand, within CCNA_03818at 3983.090 kb on - strand, within CCNA_03818at 3983.104 kb on + strandat 3983.112 kb on - strandat 3983.112 kb on - strandat 3983.116 kb on + strandat 3983.116 kb on + strandat 3983.116 kb on + strandat 3983.116 kb on + strandat 3983.130 kb on - strandat 3983.139 kb on + strandat 3983.147 kb on - strandat 3983.149 kb on + strandat 3983.152 kb on - strandat 3983.154 kb on + strandat 3983.157 kb on - strandat 3983.162 kb on - strandat 3983.162 kb on - strandat 3983.241 kb on + strandat 3983.274 kb on + strandat 3983.288 kb on - strandat 3983.305 kb on - strandat 3983.322 kb on - strandat 3983.490 kb on + strandat 3983.490 kb on + strandat 3983.490 kb on + strandat 3983.545 kb on - strandat 3983.550 kb on + strandat 3983.560 kb on + strandat 3983.560 kb on + strandat 3983.567 kb on - strandat 3983.568 kb on - strandat 3983.568 kb on - strandat 3983.568 kb on - strandat 3983.580 kb on + strandat 3983.592 kb on - strandat 3983.670 kb on - strandat 3983.671 kb on - strandat 3983.686 kb on - strandat 3983.754 kb on + strandat 3983.754 kb on + strandat 3983.756 kb on + strandat 3983.766 kb on + strandat 3983.766 kb on + strandat 3983.774 kb on - strandat 3983.790 kb on + strandat 3983.798 kb on - strandat 3983.802 kb on + strandat 3983.808 kb on - strandat 3983.843 kb on - strandat 3983.848 kb on - strandat 3983.848 kb on - strandat 3983.850 kb on + strandat 3983.850 kb on + strandat 3983.850 kb on + strandat 3983.850 kb on + strandat 3983.858 kb on - strandat 3983.858 kb on - strandat 3983.860 kb on + strandat 3983.921 kb on + strandat 3983.921 kb on + strandat 3986.347 kb on - strandat 3986.347 kb on - strandat 3986.379 kb on + strandat 3986.387 kb on - strandat 3986.387 kb on - strandat 3986.387 kb on - strandat 3986.387 kb on - strandat 3986.442 kb on + strandat 3986.447 kb on + strandat 3986.448 kb on + strandat 3986.448 kb on + strandat 3986.453 kb on + strandat 3986.461 kb on - strandat 3986.461 kb on - strandat 3986.463 kb on - strandat 3986.531 kb on + strandat 3986.579 kb on + strand, within CCNA_03820at 3986.620 kb on + strand, within CCNA_03820at 3986.648 kb on + strand, within CCNA_03820at 3986.658 kb on + strand, within CCNA_03820at 3986.679 kb on + strand, within CCNA_03820at 3986.757 kb on + strand, within CCNA_03820at 3986.825 kb on + strand, within CCNA_03820at 3986.981 kb on + strand, within CCNA_03820at 3987.017 kb on + strand, within CCNA_03820at 3987.123 kb on + strandat 3987.234 kb on + strandat 3987.289 kb on + strandat 3987.290 kb on + strandat 3987.307 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (N)
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3,982,973 + CCNA_03818 0.54 -0.4
3,982,973 + CCNA_03818 0.54 -0.6
3,982,973 + CCNA_03818 0.54 +0.8
3,982,973 + CCNA_03818 0.54 +1.0
3,982,973 + CCNA_03818 0.54 +0.7
3,982,973 + CCNA_03818 0.54 +0.0
3,983,070 - CCNA_03818 0.82 +1.2
3,983,082 + CCNA_03818 0.85 +0.6
3,983,089 - CCNA_03818 0.87 +0.6
3,983,090 - CCNA_03818 0.88 -0.0
3,983,104 + -0.2
3,983,112 - -0.1
3,983,112 - -0.3
3,983,116 + +0.1
3,983,116 + +0.5
3,983,116 + +1.6
3,983,116 + +0.1
3,983,130 - +1.0
3,983,139 + +2.2
3,983,147 - -1.2
3,983,149 + -0.2
3,983,152 - -0.2
3,983,154 + -0.2
3,983,157 - -0.6
3,983,162 - -1.9
3,983,162 - +0.6
3,983,241 + +2.1
3,983,274 + -0.0
3,983,288 - -2.2
3,983,305 - -0.3
3,983,322 - +0.3
3,983,490 + -1.2
3,983,490 + -0.8
3,983,490 + -2.1
3,983,545 - -2.0
3,983,550 + +0.4
3,983,560 + +0.5
3,983,560 + +1.0
3,983,567 - -1.7
3,983,568 - -0.6
3,983,568 - +0.6
3,983,568 - -0.7
3,983,580 + -1.2
3,983,592 - -2.1
3,983,670 - -0.2
3,983,671 - +1.0
3,983,686 - +0.2
3,983,754 + -0.3
3,983,754 + -0.8
3,983,756 + -0.2
3,983,766 + -0.7
3,983,766 + -1.3
3,983,774 - +0.3
3,983,790 + -2.6
3,983,798 - +1.2
3,983,802 + -2.3
3,983,808 - -1.5
3,983,843 - -0.5
3,983,848 - -1.2
3,983,848 - +0.0
3,983,850 + +0.4
3,983,850 + +1.0
3,983,850 + +0.4
3,983,850 + +0.4
3,983,858 - -0.8
3,983,858 - +1.1
3,983,860 + +1.0
3,983,921 + +0.6
3,983,921 + -0.4
3,986,347 - +0.8
3,986,347 - -0.2
3,986,379 + +1.0
3,986,387 - -0.2
3,986,387 - +0.6
3,986,387 - +0.3
3,986,387 - -0.1
3,986,442 + +0.5
3,986,447 + +0.1
3,986,448 + +1.2
3,986,448 + +0.2
3,986,453 + +0.3
3,986,461 - +0.4
3,986,461 - +1.2
3,986,463 - +0.5
3,986,531 + -1.7
3,986,579 + CCNA_03820 0.17 -2.0
3,986,620 + CCNA_03820 0.23 -4.6
3,986,648 + CCNA_03820 0.27 -2.6
3,986,658 + CCNA_03820 0.29 +0.2
3,986,679 + CCNA_03820 0.32 -1.9
3,986,757 + CCNA_03820 0.44 -3.6
3,986,825 + CCNA_03820 0.54 -2.7
3,986,981 + CCNA_03820 0.78 -0.9
3,987,017 + CCNA_03820 0.83 -2.9
3,987,123 + +1.0
3,987,234 + +1.5
3,987,289 + +1.2
3,987,290 + +1.1
3,987,307 + +0.7

Or see this region's nucleotide sequence