Experiment: Inosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03818 and CCNA_03819 are separated by 735 nucleotides CCNA_03819 and CCNA_03820 are separated by 123 nucleotides
CCNA_03818: CCNA_03818 - hypothetical protein, at 3,982,782 to 3,983,132
_03818
CCNA_03819: CCNA_03819 - cell division protein FtsK, at 3,983,868 to 3,986,345
_03819
CCNA_03820: CCNA_03820 - outer-membrane lipoproteins carrier protein, at 3,986,469 to 3,987,128
_03820
Position (kb)
3983
3984
3985
3986
3987 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3982.973 kb on + strand, within CCNA_03818 at 3982.973 kb on + strand, within CCNA_03818 at 3982.973 kb on + strand, within CCNA_03818 at 3982.973 kb on + strand, within CCNA_03818 at 3982.973 kb on + strand, within CCNA_03818 at 3982.973 kb on + strand, within CCNA_03818 at 3983.070 kb on - strand, within CCNA_03818 at 3983.082 kb on + strand, within CCNA_03818 at 3983.089 kb on - strand, within CCNA_03818 at 3983.090 kb on - strand, within CCNA_03818 at 3983.104 kb on + strand at 3983.112 kb on - strand at 3983.112 kb on - strand at 3983.116 kb on + strand at 3983.116 kb on + strand at 3983.116 kb on + strand at 3983.116 kb on + strand at 3983.130 kb on - strand at 3983.139 kb on + strand at 3983.147 kb on - strand at 3983.149 kb on + strand at 3983.152 kb on - strand at 3983.154 kb on + strand at 3983.157 kb on - strand at 3983.162 kb on - strand at 3983.162 kb on - strand at 3983.241 kb on + strand at 3983.274 kb on + strand at 3983.288 kb on - strand at 3983.305 kb on - strand at 3983.322 kb on - strand at 3983.490 kb on + strand at 3983.490 kb on + strand at 3983.490 kb on + strand at 3983.545 kb on - strand at 3983.550 kb on + strand at 3983.560 kb on + strand at 3983.560 kb on + strand at 3983.567 kb on - strand at 3983.568 kb on - strand at 3983.568 kb on - strand at 3983.568 kb on - strand at 3983.580 kb on + strand at 3983.592 kb on - strand at 3983.670 kb on - strand at 3983.671 kb on - strand at 3983.686 kb on - strand at 3983.754 kb on + strand at 3983.754 kb on + strand at 3983.756 kb on + strand at 3983.766 kb on + strand at 3983.766 kb on + strand at 3983.774 kb on - strand at 3983.790 kb on + strand at 3983.798 kb on - strand at 3983.802 kb on + strand at 3983.808 kb on - strand at 3983.843 kb on - strand at 3983.848 kb on - strand at 3983.848 kb on - strand at 3983.850 kb on + strand at 3983.850 kb on + strand at 3983.850 kb on + strand at 3983.850 kb on + strand at 3983.858 kb on - strand at 3983.858 kb on - strand at 3983.860 kb on + strand at 3983.921 kb on + strand at 3983.921 kb on + strand at 3986.347 kb on - strand at 3986.347 kb on - strand at 3986.379 kb on + strand at 3986.387 kb on - strand at 3986.387 kb on - strand at 3986.387 kb on - strand at 3986.387 kb on - strand at 3986.442 kb on + strand at 3986.447 kb on + strand at 3986.448 kb on + strand at 3986.448 kb on + strand at 3986.453 kb on + strand at 3986.461 kb on - strand at 3986.461 kb on - strand at 3986.463 kb on - strand at 3986.531 kb on + strand at 3986.579 kb on + strand, within CCNA_03820 at 3986.620 kb on + strand, within CCNA_03820 at 3986.648 kb on + strand, within CCNA_03820 at 3986.658 kb on + strand, within CCNA_03820 at 3986.679 kb on + strand, within CCNA_03820 at 3986.757 kb on + strand, within CCNA_03820 at 3986.825 kb on + strand, within CCNA_03820 at 3986.981 kb on + strand, within CCNA_03820 at 3987.017 kb on + strand, within CCNA_03820 at 3987.123 kb on + strand at 3987.234 kb on + strand at 3987.289 kb on + strand at 3987.290 kb on + strand at 3987.307 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Inosine (N) remove 3,982,973 + CCNA_03818 0.54 -0.4 3,982,973 + CCNA_03818 0.54 -0.6 3,982,973 + CCNA_03818 0.54 +0.8 3,982,973 + CCNA_03818 0.54 +1.0 3,982,973 + CCNA_03818 0.54 +0.7 3,982,973 + CCNA_03818 0.54 +0.0 3,983,070 - CCNA_03818 0.82 +1.2 3,983,082 + CCNA_03818 0.85 +0.6 3,983,089 - CCNA_03818 0.87 +0.6 3,983,090 - CCNA_03818 0.88 -0.0 3,983,104 + -0.2 3,983,112 - -0.1 3,983,112 - -0.3 3,983,116 + +0.1 3,983,116 + +0.5 3,983,116 + +1.6 3,983,116 + +0.1 3,983,130 - +1.0 3,983,139 + +2.2 3,983,147 - -1.2 3,983,149 + -0.2 3,983,152 - -0.2 3,983,154 + -0.2 3,983,157 - -0.6 3,983,162 - -1.9 3,983,162 - +0.6 3,983,241 + +2.1 3,983,274 + -0.0 3,983,288 - -2.2 3,983,305 - -0.3 3,983,322 - +0.3 3,983,490 + -1.2 3,983,490 + -0.8 3,983,490 + -2.1 3,983,545 - -2.0 3,983,550 + +0.4 3,983,560 + +0.5 3,983,560 + +1.0 3,983,567 - -1.7 3,983,568 - -0.6 3,983,568 - +0.6 3,983,568 - -0.7 3,983,580 + -1.2 3,983,592 - -2.1 3,983,670 - -0.2 3,983,671 - +1.0 3,983,686 - +0.2 3,983,754 + -0.3 3,983,754 + -0.8 3,983,756 + -0.2 3,983,766 + -0.7 3,983,766 + -1.3 3,983,774 - +0.3 3,983,790 + -2.6 3,983,798 - +1.2 3,983,802 + -2.3 3,983,808 - -1.5 3,983,843 - -0.5 3,983,848 - -1.2 3,983,848 - +0.0 3,983,850 + +0.4 3,983,850 + +1.0 3,983,850 + +0.4 3,983,850 + +0.4 3,983,858 - -0.8 3,983,858 - +1.1 3,983,860 + +1.0 3,983,921 + +0.6 3,983,921 + -0.4 3,986,347 - +0.8 3,986,347 - -0.2 3,986,379 + +1.0 3,986,387 - -0.2 3,986,387 - +0.6 3,986,387 - +0.3 3,986,387 - -0.1 3,986,442 + +0.5 3,986,447 + +0.1 3,986,448 + +1.2 3,986,448 + +0.2 3,986,453 + +0.3 3,986,461 - +0.4 3,986,461 - +1.2 3,986,463 - +0.5 3,986,531 + -1.7 3,986,579 + CCNA_03820 0.17 -2.0 3,986,620 + CCNA_03820 0.23 -4.6 3,986,648 + CCNA_03820 0.27 -2.6 3,986,658 + CCNA_03820 0.29 +0.2 3,986,679 + CCNA_03820 0.32 -1.9 3,986,757 + CCNA_03820 0.44 -3.6 3,986,825 + CCNA_03820 0.54 -2.7 3,986,981 + CCNA_03820 0.78 -0.9 3,987,017 + CCNA_03820 0.83 -2.9 3,987,123 + +1.0 3,987,234 + +1.5 3,987,289 + +1.2 3,987,290 + +1.1 3,987,307 + +0.7
Or see this region's nucleotide sequence