Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02687

Experiment: Inosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02686 and CCNA_02687 are separated by 34 nucleotidesCCNA_02687 and CCNA_02688 are separated by 130 nucleotides CCNA_02686: CCNA_02686 - N-carbamoyl-L-amino acid hydrolase, at 2,839,054 to 2,840,337 _02686 CCNA_02687: CCNA_02687 - serine-pyruvate aminotransferase, at 2,840,372 to 2,841,652 _02687 CCNA_02688: CCNA_02688 - PuuE-related allantoinase, at 2,841,783 to 2,842,697 _02688 Position (kb) 2840 2841 2842Strain fitness (log2 ratio) -3 -2 -1 0 1at 2839.379 kb on - strand, within CCNA_02686at 2839.383 kb on + strand, within CCNA_02686at 2839.407 kb on - strand, within CCNA_02686at 2839.426 kb on - strand, within CCNA_02686at 2839.485 kb on + strand, within CCNA_02686at 2839.493 kb on + strand, within CCNA_02686at 2839.493 kb on + strand, within CCNA_02686at 2839.500 kb on - strand, within CCNA_02686at 2839.513 kb on + strand, within CCNA_02686at 2839.522 kb on - strand, within CCNA_02686at 2839.532 kb on - strand, within CCNA_02686at 2839.609 kb on - strand, within CCNA_02686at 2839.624 kb on + strand, within CCNA_02686at 2839.661 kb on + strand, within CCNA_02686at 2839.697 kb on + strand, within CCNA_02686at 2839.707 kb on - strand, within CCNA_02686at 2839.743 kb on + strand, within CCNA_02686at 2839.755 kb on + strand, within CCNA_02686at 2839.776 kb on + strand, within CCNA_02686at 2839.796 kb on + strand, within CCNA_02686at 2839.845 kb on + strand, within CCNA_02686at 2839.871 kb on - strand, within CCNA_02686at 2839.889 kb on + strand, within CCNA_02686at 2839.973 kb on + strand, within CCNA_02686at 2839.973 kb on + strand, within CCNA_02686at 2839.986 kb on + strand, within CCNA_02686at 2840.012 kb on + strand, within CCNA_02686at 2840.026 kb on - strand, within CCNA_02686at 2840.026 kb on - strand, within CCNA_02686at 2840.029 kb on + strand, within CCNA_02686at 2840.034 kb on + strand, within CCNA_02686at 2840.073 kb on - strand, within CCNA_02686at 2840.134 kb on + strand, within CCNA_02686at 2840.134 kb on + strand, within CCNA_02686at 2840.134 kb on + strand, within CCNA_02686at 2840.141 kb on + strand, within CCNA_02686at 2840.148 kb on + strand, within CCNA_02686at 2840.163 kb on + strand, within CCNA_02686at 2840.179 kb on - strand, within CCNA_02686at 2840.179 kb on - strand, within CCNA_02686at 2840.207 kb on + strand, within CCNA_02686at 2840.235 kb on + strandat 2840.256 kb on - strandat 2840.263 kb on + strandat 2840.364 kb on + strandat 2840.364 kb on + strandat 2840.366 kb on + strandat 2840.372 kb on - strandat 2840.372 kb on - strandat 2840.372 kb on - strandat 2840.379 kb on + strandat 2840.478 kb on + strandat 2840.501 kb on - strand, within CCNA_02687at 2840.501 kb on - strand, within CCNA_02687at 2840.530 kb on + strand, within CCNA_02687at 2840.542 kb on + strand, within CCNA_02687at 2840.668 kb on + strand, within CCNA_02687at 2840.668 kb on + strand, within CCNA_02687at 2840.676 kb on - strand, within CCNA_02687at 2840.686 kb on - strand, within CCNA_02687at 2840.704 kb on + strand, within CCNA_02687at 2840.707 kb on - strand, within CCNA_02687at 2840.712 kb on - strand, within CCNA_02687at 2840.757 kb on - strand, within CCNA_02687at 2840.782 kb on + strand, within CCNA_02687at 2840.863 kb on + strand, within CCNA_02687at 2840.930 kb on + strand, within CCNA_02687at 2840.935 kb on + strand, within CCNA_02687at 2840.943 kb on - strand, within CCNA_02687at 2840.966 kb on + strand, within CCNA_02687at 2841.025 kb on - strand, within CCNA_02687at 2841.141 kb on + strand, within CCNA_02687at 2841.225 kb on - strand, within CCNA_02687at 2841.225 kb on - strand, within CCNA_02687at 2841.241 kb on + strand, within CCNA_02687at 2841.318 kb on - strand, within CCNA_02687at 2841.425 kb on + strand, within CCNA_02687at 2841.425 kb on + strand, within CCNA_02687at 2841.425 kb on + strand, within CCNA_02687at 2841.425 kb on + strand, within CCNA_02687at 2841.425 kb on + strand, within CCNA_02687at 2841.433 kb on - strand, within CCNA_02687at 2841.458 kb on + strand, within CCNA_02687at 2841.482 kb on + strand, within CCNA_02687at 2841.482 kb on + strand, within CCNA_02687at 2841.490 kb on - strand, within CCNA_02687at 2841.513 kb on - strand, within CCNA_02687at 2841.549 kb on + strandat 2841.589 kb on - strandat 2841.589 kb on - strandat 2841.594 kb on - strandat 2841.615 kb on + strandat 2841.643 kb on + strandat 2841.649 kb on - strandat 2841.651 kb on - strandat 2841.651 kb on - strandat 2841.660 kb on + strandat 2841.708 kb on + strandat 2841.710 kb on + strandat 2841.739 kb on - strandat 2841.786 kb on + strandat 2841.855 kb on - strandat 2841.858 kb on + strandat 2841.858 kb on + strandat 2841.866 kb on - strandat 2841.878 kb on - strand, within CCNA_02688at 2841.911 kb on - strand, within CCNA_02688at 2841.952 kb on + strand, within CCNA_02688at 2841.970 kb on - strand, within CCNA_02688at 2842.058 kb on - strand, within CCNA_02688at 2842.059 kb on - strand, within CCNA_02688at 2842.059 kb on - strand, within CCNA_02688at 2842.080 kb on - strand, within CCNA_02688at 2842.086 kb on - strand, within CCNA_02688at 2842.088 kb on + strand, within CCNA_02688at 2842.088 kb on + strand, within CCNA_02688at 2842.120 kb on - strand, within CCNA_02688at 2842.128 kb on + strand, within CCNA_02688at 2842.181 kb on + strand, within CCNA_02688at 2842.216 kb on - strand, within CCNA_02688at 2842.219 kb on + strand, within CCNA_02688at 2842.264 kb on + strand, within CCNA_02688at 2842.266 kb on + strand, within CCNA_02688at 2842.277 kb on + strand, within CCNA_02688at 2842.283 kb on + strand, within CCNA_02688at 2842.283 kb on + strand, within CCNA_02688at 2842.283 kb on + strand, within CCNA_02688at 2842.283 kb on + strand, within CCNA_02688at 2842.285 kb on - strand, within CCNA_02688at 2842.291 kb on - strand, within CCNA_02688at 2842.291 kb on - strand, within CCNA_02688at 2842.291 kb on - strand, within CCNA_02688at 2842.308 kb on + strand, within CCNA_02688at 2842.355 kb on + strand, within CCNA_02688at 2842.368 kb on + strand, within CCNA_02688at 2842.397 kb on + strand, within CCNA_02688at 2842.405 kb on + strand, within CCNA_02688at 2842.406 kb on - strand, within CCNA_02688at 2842.410 kb on - strand, within CCNA_02688at 2842.413 kb on - strand, within CCNA_02688at 2842.443 kb on + strand, within CCNA_02688at 2842.446 kb on - strand, within CCNA_02688at 2842.463 kb on + strand, within CCNA_02688at 2842.463 kb on + strand, within CCNA_02688at 2842.471 kb on - strand, within CCNA_02688at 2842.476 kb on - strand, within CCNA_02688at 2842.532 kb on - strand, within CCNA_02688at 2842.539 kb on + strand, within CCNA_02688at 2842.542 kb on - strand, within CCNA_02688at 2842.547 kb on - strand, within CCNA_02688at 2842.559 kb on + strand, within CCNA_02688at 2842.574 kb on + strand, within CCNA_02688at 2842.582 kb on - strand, within CCNA_02688at 2842.610 kb on - strandat 2842.625 kb on + strandat 2842.630 kb on - strandat 2842.630 kb on - strandat 2842.648 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (N)
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2,839,379 - CCNA_02686 0.25 -1.1
2,839,383 + CCNA_02686 0.26 -1.2
2,839,407 - CCNA_02686 0.27 -0.3
2,839,426 - CCNA_02686 0.29 -2.7
2,839,485 + CCNA_02686 0.34 -2.1
2,839,493 + CCNA_02686 0.34 -2.3
2,839,493 + CCNA_02686 0.34 -1.7
2,839,500 - CCNA_02686 0.35 -2.1
2,839,513 + CCNA_02686 0.36 -1.5
2,839,522 - CCNA_02686 0.36 -1.5
2,839,532 - CCNA_02686 0.37 -0.6
2,839,609 - CCNA_02686 0.43 -2.9
2,839,624 + CCNA_02686 0.44 -2.4
2,839,661 + CCNA_02686 0.47 -1.5
2,839,697 + CCNA_02686 0.50 -1.8
2,839,707 - CCNA_02686 0.51 -1.3
2,839,743 + CCNA_02686 0.54 -1.8
2,839,755 + CCNA_02686 0.55 -1.3
2,839,776 + CCNA_02686 0.56 -1.1
2,839,796 + CCNA_02686 0.58 -1.2
2,839,845 + CCNA_02686 0.62 -3.1
2,839,871 - CCNA_02686 0.64 +0.6
2,839,889 + CCNA_02686 0.65 -1.2
2,839,973 + CCNA_02686 0.72 -1.8
2,839,973 + CCNA_02686 0.72 -2.3
2,839,986 + CCNA_02686 0.73 -1.6
2,840,012 + CCNA_02686 0.75 -1.4
2,840,026 - CCNA_02686 0.76 -2.0
2,840,026 - CCNA_02686 0.76 -1.6
2,840,029 + CCNA_02686 0.76 -0.9
2,840,034 + CCNA_02686 0.76 -1.1
2,840,073 - CCNA_02686 0.79 -2.4
2,840,134 + CCNA_02686 0.84 -1.1
2,840,134 + CCNA_02686 0.84 -0.5
2,840,134 + CCNA_02686 0.84 +0.2
2,840,141 + CCNA_02686 0.85 -2.9
2,840,148 + CCNA_02686 0.85 -0.4
2,840,163 + CCNA_02686 0.86 -2.6
2,840,179 - CCNA_02686 0.88 -2.5
2,840,179 - CCNA_02686 0.88 -1.5
2,840,207 + CCNA_02686 0.90 -0.9
2,840,235 + -2.4
2,840,256 - +0.4
2,840,263 + -3.0
2,840,364 + -0.7
2,840,364 + +0.7
2,840,366 + -1.1
2,840,372 - -1.6
2,840,372 - -1.6
2,840,372 - -1.4
2,840,379 + +0.3
2,840,478 + -1.9
2,840,501 - CCNA_02687 0.10 -1.2
2,840,501 - CCNA_02687 0.10 -2.3
2,840,530 + CCNA_02687 0.12 -1.2
2,840,542 + CCNA_02687 0.13 -1.5
2,840,668 + CCNA_02687 0.23 -1.4
2,840,668 + CCNA_02687 0.23 -0.6
2,840,676 - CCNA_02687 0.24 -0.9
2,840,686 - CCNA_02687 0.25 -3.1
2,840,704 + CCNA_02687 0.26 -0.9
2,840,707 - CCNA_02687 0.26 -1.2
2,840,712 - CCNA_02687 0.27 -0.3
2,840,757 - CCNA_02687 0.30 -1.6
2,840,782 + CCNA_02687 0.32 -1.8
2,840,863 + CCNA_02687 0.38 -2.3
2,840,930 + CCNA_02687 0.44 -1.5
2,840,935 + CCNA_02687 0.44 -0.2
2,840,943 - CCNA_02687 0.45 -1.6
2,840,966 + CCNA_02687 0.46 -1.1
2,841,025 - CCNA_02687 0.51 -0.6
2,841,141 + CCNA_02687 0.60 +1.4
2,841,225 - CCNA_02687 0.67 -2.6
2,841,225 - CCNA_02687 0.67 +0.4
2,841,241 + CCNA_02687 0.68 -1.4
2,841,318 - CCNA_02687 0.74 -0.2
2,841,425 + CCNA_02687 0.82 -1.1
2,841,425 + CCNA_02687 0.82 -0.5
2,841,425 + CCNA_02687 0.82 -2.5
2,841,425 + CCNA_02687 0.82 -2.1
2,841,425 + CCNA_02687 0.82 +0.8
2,841,433 - CCNA_02687 0.83 -1.8
2,841,458 + CCNA_02687 0.85 -2.6
2,841,482 + CCNA_02687 0.87 -1.7
2,841,482 + CCNA_02687 0.87 -2.6
2,841,490 - CCNA_02687 0.87 -0.6
2,841,513 - CCNA_02687 0.89 -2.4
2,841,549 + -1.4
2,841,589 - -1.8
2,841,589 - -2.0
2,841,594 - -1.0
2,841,615 + -1.1
2,841,643 + +0.7
2,841,649 - -0.6
2,841,651 - -0.2
2,841,651 - -2.4
2,841,660 + +1.1
2,841,708 + -2.6
2,841,710 + -1.4
2,841,739 - -1.6
2,841,786 + -2.2
2,841,855 - -1.2
2,841,858 + -2.3
2,841,858 + -1.0
2,841,866 - -2.0
2,841,878 - CCNA_02688 0.10 -0.6
2,841,911 - CCNA_02688 0.14 +0.8
2,841,952 + CCNA_02688 0.18 -2.9
2,841,970 - CCNA_02688 0.20 -0.9
2,842,058 - CCNA_02688 0.30 -2.2
2,842,059 - CCNA_02688 0.30 -1.8
2,842,059 - CCNA_02688 0.30 -2.4
2,842,080 - CCNA_02688 0.32 -0.8
2,842,086 - CCNA_02688 0.33 -1.7
2,842,088 + CCNA_02688 0.33 +0.6
2,842,088 + CCNA_02688 0.33 -1.2
2,842,120 - CCNA_02688 0.37 -1.0
2,842,128 + CCNA_02688 0.38 -2.4
2,842,181 + CCNA_02688 0.43 -2.4
2,842,216 - CCNA_02688 0.47 +0.1
2,842,219 + CCNA_02688 0.48 -3.0
2,842,264 + CCNA_02688 0.53 -1.2
2,842,266 + CCNA_02688 0.53 -1.2
2,842,277 + CCNA_02688 0.54 -2.8
2,842,283 + CCNA_02688 0.55 -1.6
2,842,283 + CCNA_02688 0.55 -2.7
2,842,283 + CCNA_02688 0.55 -2.7
2,842,283 + CCNA_02688 0.55 -1.2
2,842,285 - CCNA_02688 0.55 -2.0
2,842,291 - CCNA_02688 0.56 -1.3
2,842,291 - CCNA_02688 0.56 -2.2
2,842,291 - CCNA_02688 0.56 -1.1
2,842,308 + CCNA_02688 0.57 -1.0
2,842,355 + CCNA_02688 0.63 -3.0
2,842,368 + CCNA_02688 0.64 -1.6
2,842,397 + CCNA_02688 0.67 -1.9
2,842,405 + CCNA_02688 0.68 -2.0
2,842,406 - CCNA_02688 0.68 -0.6
2,842,410 - CCNA_02688 0.69 -1.9
2,842,413 - CCNA_02688 0.69 -0.2
2,842,443 + CCNA_02688 0.72 -1.3
2,842,446 - CCNA_02688 0.72 -2.3
2,842,463 + CCNA_02688 0.74 -0.9
2,842,463 + CCNA_02688 0.74 -0.7
2,842,471 - CCNA_02688 0.75 -1.7
2,842,476 - CCNA_02688 0.76 -2.4
2,842,532 - CCNA_02688 0.82 +0.4
2,842,539 + CCNA_02688 0.83 -1.5
2,842,542 - CCNA_02688 0.83 -0.6
2,842,547 - CCNA_02688 0.83 -0.4
2,842,559 + CCNA_02688 0.85 -1.5
2,842,574 + CCNA_02688 0.86 -3.0
2,842,582 - CCNA_02688 0.87 -1.7
2,842,610 - -2.4
2,842,625 + -2.2
2,842,630 - +0.4
2,842,630 - -1.7
2,842,648 - -0.4

Or see this region's nucleotide sequence