Experiment: Inosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02686 and CCNA_02687 are separated by 34 nucleotides CCNA_02687 and CCNA_02688 are separated by 130 nucleotides
CCNA_02686: CCNA_02686 - N-carbamoyl-L-amino acid hydrolase, at 2,839,054 to 2,840,337
_02686
CCNA_02687: CCNA_02687 - serine-pyruvate aminotransferase, at 2,840,372 to 2,841,652
_02687
CCNA_02688: CCNA_02688 - PuuE-related allantoinase, at 2,841,783 to 2,842,697
_02688
Position (kb)
2840
2841
2842 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2839.379 kb on - strand, within CCNA_02686 at 2839.383 kb on + strand, within CCNA_02686 at 2839.407 kb on - strand, within CCNA_02686 at 2839.426 kb on - strand, within CCNA_02686 at 2839.485 kb on + strand, within CCNA_02686 at 2839.493 kb on + strand, within CCNA_02686 at 2839.493 kb on + strand, within CCNA_02686 at 2839.500 kb on - strand, within CCNA_02686 at 2839.513 kb on + strand, within CCNA_02686 at 2839.522 kb on - strand, within CCNA_02686 at 2839.532 kb on - strand, within CCNA_02686 at 2839.609 kb on - strand, within CCNA_02686 at 2839.624 kb on + strand, within CCNA_02686 at 2839.661 kb on + strand, within CCNA_02686 at 2839.697 kb on + strand, within CCNA_02686 at 2839.707 kb on - strand, within CCNA_02686 at 2839.743 kb on + strand, within CCNA_02686 at 2839.755 kb on + strand, within CCNA_02686 at 2839.776 kb on + strand, within CCNA_02686 at 2839.796 kb on + strand, within CCNA_02686 at 2839.845 kb on + strand, within CCNA_02686 at 2839.871 kb on - strand, within CCNA_02686 at 2839.889 kb on + strand, within CCNA_02686 at 2839.973 kb on + strand, within CCNA_02686 at 2839.973 kb on + strand, within CCNA_02686 at 2839.986 kb on + strand, within CCNA_02686 at 2840.012 kb on + strand, within CCNA_02686 at 2840.026 kb on - strand, within CCNA_02686 at 2840.026 kb on - strand, within CCNA_02686 at 2840.029 kb on + strand, within CCNA_02686 at 2840.034 kb on + strand, within CCNA_02686 at 2840.073 kb on - strand, within CCNA_02686 at 2840.134 kb on + strand, within CCNA_02686 at 2840.134 kb on + strand, within CCNA_02686 at 2840.134 kb on + strand, within CCNA_02686 at 2840.141 kb on + strand, within CCNA_02686 at 2840.148 kb on + strand, within CCNA_02686 at 2840.163 kb on + strand, within CCNA_02686 at 2840.179 kb on - strand, within CCNA_02686 at 2840.179 kb on - strand, within CCNA_02686 at 2840.207 kb on + strand, within CCNA_02686 at 2840.235 kb on + strand at 2840.256 kb on - strand at 2840.263 kb on + strand at 2840.364 kb on + strand at 2840.364 kb on + strand at 2840.366 kb on + strand at 2840.372 kb on - strand at 2840.372 kb on - strand at 2840.372 kb on - strand at 2840.379 kb on + strand at 2840.478 kb on + strand at 2840.501 kb on - strand, within CCNA_02687 at 2840.501 kb on - strand, within CCNA_02687 at 2840.530 kb on + strand, within CCNA_02687 at 2840.542 kb on + strand, within CCNA_02687 at 2840.668 kb on + strand, within CCNA_02687 at 2840.668 kb on + strand, within CCNA_02687 at 2840.676 kb on - strand, within CCNA_02687 at 2840.686 kb on - strand, within CCNA_02687 at 2840.704 kb on + strand, within CCNA_02687 at 2840.707 kb on - strand, within CCNA_02687 at 2840.712 kb on - strand, within CCNA_02687 at 2840.757 kb on - strand, within CCNA_02687 at 2840.782 kb on + strand, within CCNA_02687 at 2840.863 kb on + strand, within CCNA_02687 at 2840.930 kb on + strand, within CCNA_02687 at 2840.935 kb on + strand, within CCNA_02687 at 2840.943 kb on - strand, within CCNA_02687 at 2840.966 kb on + strand, within CCNA_02687 at 2841.025 kb on - strand, within CCNA_02687 at 2841.141 kb on + strand, within CCNA_02687 at 2841.225 kb on - strand, within CCNA_02687 at 2841.225 kb on - strand, within CCNA_02687 at 2841.241 kb on + strand, within CCNA_02687 at 2841.318 kb on - strand, within CCNA_02687 at 2841.425 kb on + strand, within CCNA_02687 at 2841.425 kb on + strand, within CCNA_02687 at 2841.425 kb on + strand, within CCNA_02687 at 2841.425 kb on + strand, within CCNA_02687 at 2841.425 kb on + strand, within CCNA_02687 at 2841.433 kb on - strand, within CCNA_02687 at 2841.458 kb on + strand, within CCNA_02687 at 2841.482 kb on + strand, within CCNA_02687 at 2841.482 kb on + strand, within CCNA_02687 at 2841.490 kb on - strand, within CCNA_02687 at 2841.513 kb on - strand, within CCNA_02687 at 2841.549 kb on + strand at 2841.589 kb on - strand at 2841.589 kb on - strand at 2841.594 kb on - strand at 2841.615 kb on + strand at 2841.643 kb on + strand at 2841.649 kb on - strand at 2841.651 kb on - strand at 2841.651 kb on - strand at 2841.660 kb on + strand at 2841.708 kb on + strand at 2841.710 kb on + strand at 2841.739 kb on - strand at 2841.786 kb on + strand at 2841.855 kb on - strand at 2841.858 kb on + strand at 2841.858 kb on + strand at 2841.866 kb on - strand at 2841.878 kb on - strand, within CCNA_02688 at 2841.911 kb on - strand, within CCNA_02688 at 2841.952 kb on + strand, within CCNA_02688 at 2841.970 kb on - strand, within CCNA_02688 at 2842.058 kb on - strand, within CCNA_02688 at 2842.059 kb on - strand, within CCNA_02688 at 2842.059 kb on - strand, within CCNA_02688 at 2842.080 kb on - strand, within CCNA_02688 at 2842.086 kb on - strand, within CCNA_02688 at 2842.088 kb on + strand, within CCNA_02688 at 2842.088 kb on + strand, within CCNA_02688 at 2842.120 kb on - strand, within CCNA_02688 at 2842.128 kb on + strand, within CCNA_02688 at 2842.181 kb on + strand, within CCNA_02688 at 2842.216 kb on - strand, within CCNA_02688 at 2842.219 kb on + strand, within CCNA_02688 at 2842.264 kb on + strand, within CCNA_02688 at 2842.266 kb on + strand, within CCNA_02688 at 2842.277 kb on + strand, within CCNA_02688 at 2842.283 kb on + strand, within CCNA_02688 at 2842.283 kb on + strand, within CCNA_02688 at 2842.283 kb on + strand, within CCNA_02688 at 2842.283 kb on + strand, within CCNA_02688 at 2842.285 kb on - strand, within CCNA_02688 at 2842.291 kb on - strand, within CCNA_02688 at 2842.291 kb on - strand, within CCNA_02688 at 2842.291 kb on - strand, within CCNA_02688 at 2842.308 kb on + strand, within CCNA_02688 at 2842.355 kb on + strand, within CCNA_02688 at 2842.368 kb on + strand, within CCNA_02688 at 2842.397 kb on + strand, within CCNA_02688 at 2842.405 kb on + strand, within CCNA_02688 at 2842.406 kb on - strand, within CCNA_02688 at 2842.410 kb on - strand, within CCNA_02688 at 2842.413 kb on - strand, within CCNA_02688 at 2842.443 kb on + strand, within CCNA_02688 at 2842.446 kb on - strand, within CCNA_02688 at 2842.463 kb on + strand, within CCNA_02688 at 2842.463 kb on + strand, within CCNA_02688 at 2842.471 kb on - strand, within CCNA_02688 at 2842.476 kb on - strand, within CCNA_02688 at 2842.532 kb on - strand, within CCNA_02688 at 2842.539 kb on + strand, within CCNA_02688 at 2842.542 kb on - strand, within CCNA_02688 at 2842.547 kb on - strand, within CCNA_02688 at 2842.559 kb on + strand, within CCNA_02688 at 2842.574 kb on + strand, within CCNA_02688 at 2842.582 kb on - strand, within CCNA_02688 at 2842.610 kb on - strand at 2842.625 kb on + strand at 2842.630 kb on - strand at 2842.630 kb on - strand at 2842.648 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Inosine (N) remove 2,839,379 - CCNA_02686 0.25 -1.1 2,839,383 + CCNA_02686 0.26 -1.2 2,839,407 - CCNA_02686 0.27 -0.3 2,839,426 - CCNA_02686 0.29 -2.7 2,839,485 + CCNA_02686 0.34 -2.1 2,839,493 + CCNA_02686 0.34 -2.3 2,839,493 + CCNA_02686 0.34 -1.7 2,839,500 - CCNA_02686 0.35 -2.1 2,839,513 + CCNA_02686 0.36 -1.5 2,839,522 - CCNA_02686 0.36 -1.5 2,839,532 - CCNA_02686 0.37 -0.6 2,839,609 - CCNA_02686 0.43 -2.9 2,839,624 + CCNA_02686 0.44 -2.4 2,839,661 + CCNA_02686 0.47 -1.5 2,839,697 + CCNA_02686 0.50 -1.8 2,839,707 - CCNA_02686 0.51 -1.3 2,839,743 + CCNA_02686 0.54 -1.8 2,839,755 + CCNA_02686 0.55 -1.3 2,839,776 + CCNA_02686 0.56 -1.1 2,839,796 + CCNA_02686 0.58 -1.2 2,839,845 + CCNA_02686 0.62 -3.1 2,839,871 - CCNA_02686 0.64 +0.6 2,839,889 + CCNA_02686 0.65 -1.2 2,839,973 + CCNA_02686 0.72 -1.8 2,839,973 + CCNA_02686 0.72 -2.3 2,839,986 + CCNA_02686 0.73 -1.6 2,840,012 + CCNA_02686 0.75 -1.4 2,840,026 - CCNA_02686 0.76 -2.0 2,840,026 - CCNA_02686 0.76 -1.6 2,840,029 + CCNA_02686 0.76 -0.9 2,840,034 + CCNA_02686 0.76 -1.1 2,840,073 - CCNA_02686 0.79 -2.4 2,840,134 + CCNA_02686 0.84 -1.1 2,840,134 + CCNA_02686 0.84 -0.5 2,840,134 + CCNA_02686 0.84 +0.2 2,840,141 + CCNA_02686 0.85 -2.9 2,840,148 + CCNA_02686 0.85 -0.4 2,840,163 + CCNA_02686 0.86 -2.6 2,840,179 - CCNA_02686 0.88 -2.5 2,840,179 - CCNA_02686 0.88 -1.5 2,840,207 + CCNA_02686 0.90 -0.9 2,840,235 + -2.4 2,840,256 - +0.4 2,840,263 + -3.0 2,840,364 + -0.7 2,840,364 + +0.7 2,840,366 + -1.1 2,840,372 - -1.6 2,840,372 - -1.6 2,840,372 - -1.4 2,840,379 + +0.3 2,840,478 + -1.9 2,840,501 - CCNA_02687 0.10 -1.2 2,840,501 - CCNA_02687 0.10 -2.3 2,840,530 + CCNA_02687 0.12 -1.2 2,840,542 + CCNA_02687 0.13 -1.5 2,840,668 + CCNA_02687 0.23 -1.4 2,840,668 + CCNA_02687 0.23 -0.6 2,840,676 - CCNA_02687 0.24 -0.9 2,840,686 - CCNA_02687 0.25 -3.1 2,840,704 + CCNA_02687 0.26 -0.9 2,840,707 - CCNA_02687 0.26 -1.2 2,840,712 - CCNA_02687 0.27 -0.3 2,840,757 - CCNA_02687 0.30 -1.6 2,840,782 + CCNA_02687 0.32 -1.8 2,840,863 + CCNA_02687 0.38 -2.3 2,840,930 + CCNA_02687 0.44 -1.5 2,840,935 + CCNA_02687 0.44 -0.2 2,840,943 - CCNA_02687 0.45 -1.6 2,840,966 + CCNA_02687 0.46 -1.1 2,841,025 - CCNA_02687 0.51 -0.6 2,841,141 + CCNA_02687 0.60 +1.4 2,841,225 - CCNA_02687 0.67 -2.6 2,841,225 - CCNA_02687 0.67 +0.4 2,841,241 + CCNA_02687 0.68 -1.4 2,841,318 - CCNA_02687 0.74 -0.2 2,841,425 + CCNA_02687 0.82 -1.1 2,841,425 + CCNA_02687 0.82 -0.5 2,841,425 + CCNA_02687 0.82 -2.5 2,841,425 + CCNA_02687 0.82 -2.1 2,841,425 + CCNA_02687 0.82 +0.8 2,841,433 - CCNA_02687 0.83 -1.8 2,841,458 + CCNA_02687 0.85 -2.6 2,841,482 + CCNA_02687 0.87 -1.7 2,841,482 + CCNA_02687 0.87 -2.6 2,841,490 - CCNA_02687 0.87 -0.6 2,841,513 - CCNA_02687 0.89 -2.4 2,841,549 + -1.4 2,841,589 - -1.8 2,841,589 - -2.0 2,841,594 - -1.0 2,841,615 + -1.1 2,841,643 + +0.7 2,841,649 - -0.6 2,841,651 - -0.2 2,841,651 - -2.4 2,841,660 + +1.1 2,841,708 + -2.6 2,841,710 + -1.4 2,841,739 - -1.6 2,841,786 + -2.2 2,841,855 - -1.2 2,841,858 + -2.3 2,841,858 + -1.0 2,841,866 - -2.0 2,841,878 - CCNA_02688 0.10 -0.6 2,841,911 - CCNA_02688 0.14 +0.8 2,841,952 + CCNA_02688 0.18 -2.9 2,841,970 - CCNA_02688 0.20 -0.9 2,842,058 - CCNA_02688 0.30 -2.2 2,842,059 - CCNA_02688 0.30 -1.8 2,842,059 - CCNA_02688 0.30 -2.4 2,842,080 - CCNA_02688 0.32 -0.8 2,842,086 - CCNA_02688 0.33 -1.7 2,842,088 + CCNA_02688 0.33 +0.6 2,842,088 + CCNA_02688 0.33 -1.2 2,842,120 - CCNA_02688 0.37 -1.0 2,842,128 + CCNA_02688 0.38 -2.4 2,842,181 + CCNA_02688 0.43 -2.4 2,842,216 - CCNA_02688 0.47 +0.1 2,842,219 + CCNA_02688 0.48 -3.0 2,842,264 + CCNA_02688 0.53 -1.2 2,842,266 + CCNA_02688 0.53 -1.2 2,842,277 + CCNA_02688 0.54 -2.8 2,842,283 + CCNA_02688 0.55 -1.6 2,842,283 + CCNA_02688 0.55 -2.7 2,842,283 + CCNA_02688 0.55 -2.7 2,842,283 + CCNA_02688 0.55 -1.2 2,842,285 - CCNA_02688 0.55 -2.0 2,842,291 - CCNA_02688 0.56 -1.3 2,842,291 - CCNA_02688 0.56 -2.2 2,842,291 - CCNA_02688 0.56 -1.1 2,842,308 + CCNA_02688 0.57 -1.0 2,842,355 + CCNA_02688 0.63 -3.0 2,842,368 + CCNA_02688 0.64 -1.6 2,842,397 + CCNA_02688 0.67 -1.9 2,842,405 + CCNA_02688 0.68 -2.0 2,842,406 - CCNA_02688 0.68 -0.6 2,842,410 - CCNA_02688 0.69 -1.9 2,842,413 - CCNA_02688 0.69 -0.2 2,842,443 + CCNA_02688 0.72 -1.3 2,842,446 - CCNA_02688 0.72 -2.3 2,842,463 + CCNA_02688 0.74 -0.9 2,842,463 + CCNA_02688 0.74 -0.7 2,842,471 - CCNA_02688 0.75 -1.7 2,842,476 - CCNA_02688 0.76 -2.4 2,842,532 - CCNA_02688 0.82 +0.4 2,842,539 + CCNA_02688 0.83 -1.5 2,842,542 - CCNA_02688 0.83 -0.6 2,842,547 - CCNA_02688 0.83 -0.4 2,842,559 + CCNA_02688 0.85 -1.5 2,842,574 + CCNA_02688 0.86 -3.0 2,842,582 - CCNA_02688 0.87 -1.7 2,842,610 - -2.4 2,842,625 + -2.2 2,842,630 - +0.4 2,842,630 - -1.7 2,842,648 - -0.4
Or see this region's nucleotide sequence