Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01729

Experiment: Inosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01727 and CCNA_01728 are separated by 185 nucleotidesCCNA_01728 and CCNA_01729 are separated by 48 nucleotidesCCNA_01729 and CCNA_01730 are separated by 19 nucleotides CCNA_01727: CCNA_01727 - methyl-accepting chemotaxis protein, at 1,854,729 to 1,856,234 _01727 CCNA_01728: CCNA_01728 - short chain dehydrogenase, at 1,856,420 to 1,857,175 _01728 CCNA_01729: CCNA_01729 - transporter, sodium/bile acid symporter family, at 1,857,224 to 1,858,237 _01729 CCNA_01730: CCNA_01730 - amidophosphoribosyltransferase, at 1,858,257 to 1,859,759 _01730 Position (kb) 1857 1858 1859Strain fitness (log2 ratio) -2 -1 0 1 2at 1856.226 kb on - strandat 1856.226 kb on - strandat 1856.226 kb on - strandat 1856.226 kb on - strandat 1856.287 kb on + strandat 1856.319 kb on - strandat 1856.455 kb on + strandat 1856.464 kb on + strandat 1856.465 kb on + strandat 1856.472 kb on + strandat 1856.473 kb on - strandat 1856.501 kb on - strand, within CCNA_01728at 1856.501 kb on - strand, within CCNA_01728at 1856.518 kb on + strand, within CCNA_01728at 1856.533 kb on - strand, within CCNA_01728at 1856.544 kb on + strand, within CCNA_01728at 1856.633 kb on - strand, within CCNA_01728at 1856.659 kb on - strand, within CCNA_01728at 1856.663 kb on + strand, within CCNA_01728at 1856.714 kb on + strand, within CCNA_01728at 1856.714 kb on + strand, within CCNA_01728at 1856.735 kb on + strand, within CCNA_01728at 1856.755 kb on + strand, within CCNA_01728at 1856.776 kb on + strand, within CCNA_01728at 1856.784 kb on + strand, within CCNA_01728at 1856.802 kb on - strand, within CCNA_01728at 1856.828 kb on - strand, within CCNA_01728at 1856.832 kb on - strand, within CCNA_01728at 1856.889 kb on - strand, within CCNA_01728at 1856.924 kb on + strand, within CCNA_01728at 1856.952 kb on - strand, within CCNA_01728at 1856.958 kb on + strand, within CCNA_01728at 1856.966 kb on - strand, within CCNA_01728at 1856.966 kb on - strand, within CCNA_01728at 1857.057 kb on - strand, within CCNA_01728at 1857.058 kb on - strand, within CCNA_01728at 1857.083 kb on - strand, within CCNA_01728at 1857.083 kb on - strand, within CCNA_01728at 1857.089 kb on - strand, within CCNA_01728at 1857.093 kb on - strand, within CCNA_01728at 1857.133 kb on - strandat 1857.162 kb on - strandat 1857.162 kb on - strandat 1857.183 kb on + strandat 1857.183 kb on + strandat 1857.191 kb on - strandat 1857.227 kb on + strandat 1857.230 kb on - strandat 1857.230 kb on - strandat 1857.230 kb on - strandat 1857.255 kb on + strandat 1857.255 kb on + strandat 1857.263 kb on - strandat 1857.360 kb on - strand, within CCNA_01729at 1857.541 kb on - strand, within CCNA_01729at 1857.570 kb on + strand, within CCNA_01729at 1857.797 kb on + strand, within CCNA_01729at 1857.797 kb on + strand, within CCNA_01729at 1857.825 kb on + strand, within CCNA_01729at 1857.868 kb on - strand, within CCNA_01729at 1857.878 kb on - strand, within CCNA_01729at 1857.878 kb on - strand, within CCNA_01729at 1857.947 kb on + strand, within CCNA_01729at 1857.948 kb on - strand, within CCNA_01729at 1858.029 kb on - strand, within CCNA_01729at 1858.184 kb on - strandat 1858.264 kb on - strandat 1858.269 kb on - strandat 1858.313 kb on - strandat 1858.359 kb on - strandat 1858.408 kb on - strand, within CCNA_01730at 1858.517 kb on + strand, within CCNA_01730at 1858.535 kb on - strand, within CCNA_01730at 1858.537 kb on + strand, within CCNA_01730at 1858.548 kb on - strand, within CCNA_01730at 1858.566 kb on + strand, within CCNA_01730at 1858.609 kb on + strand, within CCNA_01730at 1858.729 kb on - strand, within CCNA_01730at 1858.731 kb on - strand, within CCNA_01730at 1858.744 kb on - strand, within CCNA_01730at 1858.744 kb on - strand, within CCNA_01730at 1858.804 kb on + strand, within CCNA_01730at 1858.812 kb on - strand, within CCNA_01730at 1858.883 kb on + strand, within CCNA_01730at 1858.892 kb on - strand, within CCNA_01730at 1858.938 kb on + strand, within CCNA_01730at 1858.990 kb on + strand, within CCNA_01730at 1858.998 kb on - strand, within CCNA_01730at 1859.012 kb on - strand, within CCNA_01730at 1859.104 kb on - strand, within CCNA_01730

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (N)
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1,856,226 - +0.4
1,856,226 - +0.5
1,856,226 - +0.4
1,856,226 - +0.3
1,856,287 + -2.3
1,856,319 - +0.2
1,856,455 + +1.6
1,856,464 + -0.2
1,856,465 + -0.2
1,856,472 + +0.7
1,856,473 - +1.1
1,856,501 - CCNA_01728 0.11 +2.6
1,856,501 - CCNA_01728 0.11 +2.1
1,856,518 + CCNA_01728 0.13 +0.1
1,856,533 - CCNA_01728 0.15 +0.6
1,856,544 + CCNA_01728 0.16 -0.9
1,856,633 - CCNA_01728 0.28 +1.0
1,856,659 - CCNA_01728 0.32 +1.0
1,856,663 + CCNA_01728 0.32 +0.6
1,856,714 + CCNA_01728 0.39 -1.2
1,856,714 + CCNA_01728 0.39 -0.3
1,856,735 + CCNA_01728 0.42 +1.4
1,856,755 + CCNA_01728 0.44 -0.4
1,856,776 + CCNA_01728 0.47 -2.3
1,856,784 + CCNA_01728 0.48 -0.4
1,856,802 - CCNA_01728 0.51 +1.6
1,856,828 - CCNA_01728 0.54 +2.7
1,856,832 - CCNA_01728 0.54 +0.0
1,856,889 - CCNA_01728 0.62 +1.3
1,856,924 + CCNA_01728 0.67 +0.6
1,856,952 - CCNA_01728 0.70 +0.4
1,856,958 + CCNA_01728 0.71 -0.1
1,856,966 - CCNA_01728 0.72 +1.7
1,856,966 - CCNA_01728 0.72 +1.0
1,857,057 - CCNA_01728 0.84 +1.5
1,857,058 - CCNA_01728 0.84 +1.4
1,857,083 - CCNA_01728 0.88 +1.4
1,857,083 - CCNA_01728 0.88 +0.3
1,857,089 - CCNA_01728 0.88 +1.1
1,857,093 - CCNA_01728 0.89 +1.5
1,857,133 - +0.5
1,857,162 - +1.1
1,857,162 - +1.0
1,857,183 + +0.2
1,857,183 + -1.3
1,857,191 - +1.2
1,857,227 + -1.1
1,857,230 - -1.3
1,857,230 - +0.2
1,857,230 - +0.5
1,857,255 + -1.0
1,857,255 + -0.4
1,857,263 - -0.6
1,857,360 - CCNA_01729 0.13 -0.0
1,857,541 - CCNA_01729 0.31 -0.8
1,857,570 + CCNA_01729 0.34 -0.3
1,857,797 + CCNA_01729 0.57 -0.2
1,857,797 + CCNA_01729 0.57 -0.0
1,857,825 + CCNA_01729 0.59 -0.9
1,857,868 - CCNA_01729 0.64 -1.4
1,857,878 - CCNA_01729 0.64 -1.2
1,857,878 - CCNA_01729 0.64 -0.6
1,857,947 + CCNA_01729 0.71 -1.3
1,857,948 - CCNA_01729 0.71 -1.0
1,858,029 - CCNA_01729 0.79 -1.4
1,858,184 - -0.3
1,858,264 - +2.0
1,858,269 - -2.1
1,858,313 - +1.2
1,858,359 - -0.7
1,858,408 - CCNA_01730 0.10 -1.2
1,858,517 + CCNA_01730 0.17 +0.6
1,858,535 - CCNA_01730 0.18 -1.1
1,858,537 + CCNA_01730 0.19 -0.0
1,858,548 - CCNA_01730 0.19 -2.2
1,858,566 + CCNA_01730 0.21 -0.6
1,858,609 + CCNA_01730 0.23 -1.5
1,858,729 - CCNA_01730 0.31 -0.7
1,858,731 - CCNA_01730 0.32 -2.3
1,858,744 - CCNA_01730 0.32 -0.1
1,858,744 - CCNA_01730 0.32 +0.2
1,858,804 + CCNA_01730 0.36 +0.1
1,858,812 - CCNA_01730 0.37 -1.4
1,858,883 + CCNA_01730 0.42 -1.6
1,858,892 - CCNA_01730 0.42 -0.3
1,858,938 + CCNA_01730 0.45 -0.4
1,858,990 + CCNA_01730 0.49 -0.8
1,858,998 - CCNA_01730 0.49 -0.6
1,859,012 - CCNA_01730 0.50 -0.6
1,859,104 - CCNA_01730 0.56 -0.8

Or see this region's nucleotide sequence