Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS10215

Experiment: R2A with Carbenicillin 0.2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Carbenicillin 0.2 mg/ml
2,509,871	-		CA265_RS10210	0.43	+0.0
2,509,931	-		CA265_RS10210	0.47	+0.6
2,509,935	-		CA265_RS10210	0.47	-0.1
2,509,967	+		CA265_RS10210	0.49	+0.4
2,509,986	+		CA265_RS10210	0.50	-0.1
2,510,083	-		CA265_RS10210	0.57	+0.3
2,510,135	-		CA265_RS10210	0.60	+0.9
2,510,142	+		CA265_RS10210	0.61	+0.3
2,510,143	-		CA265_RS10210	0.61	+0.7
2,510,153	-		CA265_RS10210	0.61	-0.1
2,510,163	-		CA265_RS10210	0.62	+0.5
2,510,176	-		CA265_RS10210	0.63	+0.2
2,510,181	+		CA265_RS10210	0.63	-0.1
2,510,181	+		CA265_RS10210	0.63	-0.0
2,510,182	-		CA265_RS10210	0.63	-0.0
2,510,183	+		CA265_RS10210	0.63	-0.1
2,510,184	-		CA265_RS10210	0.64	+1.1
2,510,184	-		CA265_RS10210	0.64	+0.4
2,510,203	+		CA265_RS10210	0.65	+0.0
2,510,205	+		CA265_RS10210	0.65	-0.3
2,510,213	+		CA265_RS10210	0.65	+0.2
2,510,271	+		CA265_RS10210	0.69	+0.9
2,510,381	-		CA265_RS10210	0.77	+0.7
2,510,386	+				+0.2
2,510,409	+		CA265_RS10210	0.79	+0.1
2,510,556	+		CA265_RS10210	0.88	+0.0
2,510,575	+		CA265_RS10210	0.90	+0.4
2,510,575	+		CA265_RS10210	0.90	-0.3
2,510,688	-				-1.3
2,510,702	-				-0.3
2,510,723	-				+0.3
2,510,737	+				-0.4
2,510,774	+				+0.0
2,510,783	+				-0.8
2,510,784	-				+0.7
2,510,856	+				+0.1
2,510,914	+				+0.1
2,510,914	+				-0.7
2,510,917	+				-0.2
2,510,959	-				+0.8
2,510,959	-				+0.7
2,511,065	+		CA265_RS10215	0.14	-1.1
2,511,065	+		CA265_RS10215	0.14	+0.1
2,511,102	+		CA265_RS10215	0.16	-0.1
2,511,103	-		CA265_RS10215	0.16	+1.7
2,511,178	+		CA265_RS10215	0.21	-0.1
2,511,178	+		CA265_RS10215	0.21	-0.1
2,511,202	+		CA265_RS10215	0.23	+0.1
2,511,236	-		CA265_RS10215	0.25	-0.1
2,511,255	+		CA265_RS10215	0.26	-0.2
2,511,275	+		CA265_RS10215	0.27	+0.4
2,511,288	-		CA265_RS10215	0.28	+0.9
2,511,397	+		CA265_RS10215	0.35	-0.0
2,511,414	-		CA265_RS10215	0.36	+1.0
2,511,592	+		CA265_RS10215	0.47	-0.6
2,511,689	+		CA265_RS10215	0.53	-0.1
2,511,690	-		CA265_RS10215	0.53	+0.4
2,511,730	+		CA265_RS10215	0.56	+0.0
2,511,730	+		CA265_RS10215	0.56	-0.5
2,511,745	+		CA265_RS10215	0.57	+0.0
2,511,798	-		CA265_RS10215	0.60	+1.0
2,511,835	-				+2.6
2,511,835	-		CA265_RS10215	0.63	+1.2
2,511,904	-		CA265_RS10215	0.67	+0.5
2,511,904	-		CA265_RS10215	0.67	+0.2
2,511,939	+		CA265_RS10215	0.69	-0.4
2,511,998	-		CA265_RS10215	0.73	+0.3
2,512,075	-		CA265_RS10215	0.78	-0.3
2,512,144	+		CA265_RS10215	0.82	+0.2
2,512,242	+		CA265_RS10215	0.88	-0.6
2,512,242	+		CA265_RS10215	0.88	+0.1
2,512,311	-				-1.0
2,512,394	-				+0.6
2,512,410	+				-0.1
2,512,411	-				+0.4
2,512,419	+				+0.2
2,512,451	+				-0.3
2,512,517	-				+0.3
2,512,517	-				+0.7
2,512,541	-				+0.9
2,512,604	+		CA265_RS10220	0.13	-1.3
2,512,605	-		CA265_RS10220	0.13	+1.1
2,512,661	-		CA265_RS10220	0.17	+1.1
2,512,665	+		CA265_RS10220	0.17	+0.6
2,512,744	+		CA265_RS10220	0.23	-0.2
2,512,744	+		CA265_RS10220	0.23	+0.4
2,512,745	-		CA265_RS10220	0.23	+1.1
2,512,745	-		CA265_RS10220	0.23	+1.8
2,512,747	+		CA265_RS10220	0.23	+0.1
2,512,801	-		CA265_RS10220	0.27	+0.8
2,512,801	-		CA265_RS10220	0.27	+0.5
2,512,873	+		CA265_RS10220	0.32	-0.4
2,512,873	+		CA265_RS10220	0.32	-0.2
2,512,874	-		CA265_RS10220	0.32	+0.8
2,512,926	-		CA265_RS10220	0.36	+0.2
2,512,981	+		CA265_RS10220	0.40	-0.1
2,513,209	+		CA265_RS10220	0.56	+0.0
2,513,269	+		CA265_RS10220	0.60	-0.6
2,513,270	-		CA265_RS10220	0.60	+0.7
2,513,296	+		CA265_RS10220	0.62	+0.4
2,513,316	-		CA265_RS10220	0.64	-0.4
2,513,371	-		CA265_RS10220	0.68	+0.9