Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS03705

Experiment: R2A with Carbenicillin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS03695 and CA265_RS03700 are separated by 40 nucleotidesCA265_RS03700 and CA265_RS03705 are separated by 207 nucleotidesCA265_RS03705 and CA265_RS03710 overlap by 4 nucleotides CA265_RS03695: CA265_RS03695 - hypothetical protein, at 879,502 to 879,906 _RS03695 CA265_RS03700: CA265_RS03700 - hypothetical protein, at 879,947 to 880,477 _RS03700 CA265_RS03705: CA265_RS03705 - hypothetical protein, at 880,685 to 882,724 _RS03705 CA265_RS03710: CA265_RS03710 - dihydroorotase, at 882,721 to 883,977 _RS03710 Position (kb) 880 881 882 883Strain fitness (log2 ratio) -2 -1 0 1 2at 879.697 kb on + strand, within CA265_RS03695at 879.697 kb on + strand, within CA265_RS03695at 879.697 kb on + strand, within CA265_RS03695at 879.698 kb on - strand, within CA265_RS03695at 879.720 kb on + strand, within CA265_RS03695at 879.835 kb on - strand, within CA265_RS03695at 879.855 kb on + strand, within CA265_RS03695at 879.855 kb on + strand, within CA265_RS03695at 879.856 kb on - strand, within CA265_RS03695at 879.978 kb on + strandat 879.994 kb on + strandat 880.034 kb on + strand, within CA265_RS03700at 880.035 kb on - strand, within CA265_RS03700at 880.036 kb on + strand, within CA265_RS03700at 880.036 kb on + strand, within CA265_RS03700at 880.038 kb on + strand, within CA265_RS03700at 880.039 kb on - strand, within CA265_RS03700at 880.039 kb on - strand, within CA265_RS03700at 880.039 kb on - strand, within CA265_RS03700at 880.093 kb on + strand, within CA265_RS03700at 880.127 kb on + strand, within CA265_RS03700at 880.142 kb on - strand, within CA265_RS03700at 880.183 kb on + strand, within CA265_RS03700at 880.188 kb on + strand, within CA265_RS03700at 880.188 kb on + strand, within CA265_RS03700at 880.195 kb on + strand, within CA265_RS03700at 880.196 kb on - strand, within CA265_RS03700at 880.196 kb on - strand, within CA265_RS03700at 880.196 kb on - strand, within CA265_RS03700at 880.206 kb on - strand, within CA265_RS03700at 880.208 kb on - strand, within CA265_RS03700at 880.227 kb on + strand, within CA265_RS03700at 880.228 kb on - strand, within CA265_RS03700at 880.298 kb on + strand, within CA265_RS03700at 880.418 kb on + strand, within CA265_RS03700at 880.419 kb on - strand, within CA265_RS03700at 880.441 kb on - strandat 880.598 kb on + strandat 880.612 kb on - strandat 880.618 kb on + strandat 880.633 kb on + strandat 880.723 kb on - strandat 880.753 kb on - strandat 880.781 kb on + strandat 880.914 kb on - strand, within CA265_RS03705at 880.955 kb on - strand, within CA265_RS03705at 880.956 kb on + strand, within CA265_RS03705at 880.968 kb on - strand, within CA265_RS03705at 880.983 kb on - strand, within CA265_RS03705at 880.988 kb on - strand, within CA265_RS03705at 881.086 kb on - strand, within CA265_RS03705at 881.088 kb on + strand, within CA265_RS03705at 881.088 kb on + strand, within CA265_RS03705at 881.216 kb on - strand, within CA265_RS03705at 881.237 kb on - strand, within CA265_RS03705at 881.240 kb on + strand, within CA265_RS03705at 881.240 kb on + strand, within CA265_RS03705at 881.241 kb on - strand, within CA265_RS03705at 881.288 kb on - strand, within CA265_RS03705at 881.353 kb on + strand, within CA265_RS03705at 881.354 kb on - strand, within CA265_RS03705at 881.361 kb on + strand, within CA265_RS03705at 881.362 kb on - strand, within CA265_RS03705at 881.416 kb on - strand, within CA265_RS03705at 881.421 kb on + strand, within CA265_RS03705at 881.476 kb on + strand, within CA265_RS03705at 881.483 kb on - strand, within CA265_RS03705at 881.483 kb on - strand, within CA265_RS03705at 881.533 kb on + strand, within CA265_RS03705at 881.539 kb on + strand, within CA265_RS03705at 881.620 kb on + strand, within CA265_RS03705at 881.621 kb on - strand, within CA265_RS03705at 881.693 kb on + strand, within CA265_RS03705at 881.694 kb on - strand, within CA265_RS03705at 881.694 kb on - strand, within CA265_RS03705at 881.698 kb on + strand, within CA265_RS03705at 881.727 kb on - strand, within CA265_RS03705at 881.727 kb on - strand, within CA265_RS03705at 881.728 kb on + strand, within CA265_RS03705at 881.729 kb on - strand, within CA265_RS03705at 881.753 kb on - strand, within CA265_RS03705at 881.863 kb on + strand, within CA265_RS03705at 882.103 kb on + strand, within CA265_RS03705at 882.104 kb on - strand, within CA265_RS03705at 882.104 kb on - strand, within CA265_RS03705at 882.187 kb on + strand, within CA265_RS03705at 882.187 kb on + strand, within CA265_RS03705at 882.188 kb on - strand, within CA265_RS03705at 882.188 kb on - strand, within CA265_RS03705at 882.237 kb on - strand, within CA265_RS03705at 882.274 kb on - strand, within CA265_RS03705at 882.275 kb on + strand, within CA265_RS03705at 882.276 kb on - strand, within CA265_RS03705at 882.276 kb on - strand, within CA265_RS03705at 882.295 kb on + strand, within CA265_RS03705at 882.343 kb on - strand, within CA265_RS03705at 882.411 kb on - strand, within CA265_RS03705at 882.443 kb on + strand, within CA265_RS03705at 882.518 kb on + strandat 882.518 kb on + strand, within CA265_RS03705at 882.519 kb on - strand, within CA265_RS03705at 882.559 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Carbenicillin 0.2 mg/ml
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879,697 + CA265_RS03695 0.48 -0.1
879,697 + CA265_RS03695 0.48 -0.6
879,697 + CA265_RS03695 0.48 -0.1
879,698 - CA265_RS03695 0.48 -0.0
879,720 + CA265_RS03695 0.54 -1.5
879,835 - CA265_RS03695 0.82 -0.1
879,855 + CA265_RS03695 0.87 -0.5
879,855 + CA265_RS03695 0.87 -0.1
879,856 - CA265_RS03695 0.87 +0.0
879,978 + -0.7
879,994 + +0.9
880,034 + CA265_RS03700 0.16 -0.9
880,035 - CA265_RS03700 0.17 -1.4
880,036 + CA265_RS03700 0.17 +0.1
880,036 + CA265_RS03700 0.17 -0.2
880,038 + CA265_RS03700 0.17 +0.3
880,039 - CA265_RS03700 0.17 -0.2
880,039 - CA265_RS03700 0.17 +0.0
880,039 - CA265_RS03700 0.17 +0.2
880,093 + CA265_RS03700 0.27 +0.1
880,127 + CA265_RS03700 0.34 +0.5
880,142 - CA265_RS03700 0.37 -0.3
880,183 + CA265_RS03700 0.44 +0.6
880,188 + CA265_RS03700 0.45 +0.0
880,188 + CA265_RS03700 0.45 +0.3
880,195 + CA265_RS03700 0.47 +0.1
880,196 - CA265_RS03700 0.47 -1.0
880,196 - CA265_RS03700 0.47 +0.3
880,196 - CA265_RS03700 0.47 -0.0
880,206 - CA265_RS03700 0.49 +0.1
880,208 - CA265_RS03700 0.49 -1.4
880,227 + CA265_RS03700 0.53 -0.3
880,228 - CA265_RS03700 0.53 +0.1
880,298 + CA265_RS03700 0.66 -0.3
880,418 + CA265_RS03700 0.89 +1.1
880,419 - CA265_RS03700 0.89 -0.0
880,441 - +0.0
880,598 + -0.2
880,612 - +0.2
880,618 + +0.3
880,633 + +0.2
880,723 - -0.3
880,753 - -0.2
880,781 + +0.6
880,914 - CA265_RS03705 0.11 -0.0
880,955 - CA265_RS03705 0.13 +0.5
880,956 + CA265_RS03705 0.13 +0.3
880,968 - CA265_RS03705 0.14 +0.2
880,983 - CA265_RS03705 0.15 -0.4
880,988 - CA265_RS03705 0.15 +0.3
881,086 - CA265_RS03705 0.20 +0.6
881,088 + CA265_RS03705 0.20 +0.1
881,088 + CA265_RS03705 0.20 -0.3
881,216 - CA265_RS03705 0.26 -0.6
881,237 - CA265_RS03705 0.27 +0.9
881,240 + CA265_RS03705 0.27 +0.6
881,240 + CA265_RS03705 0.27 +0.1
881,241 - CA265_RS03705 0.27 -0.4
881,288 - CA265_RS03705 0.30 +0.2
881,353 + CA265_RS03705 0.33 +0.5
881,354 - CA265_RS03705 0.33 +0.1
881,361 + CA265_RS03705 0.33 -0.0
881,362 - CA265_RS03705 0.33 +0.7
881,416 - CA265_RS03705 0.36 +0.0
881,421 + CA265_RS03705 0.36 +0.3
881,476 + CA265_RS03705 0.39 -0.3
881,483 - CA265_RS03705 0.39 -1.1
881,483 - CA265_RS03705 0.39 -0.0
881,533 + CA265_RS03705 0.42 +0.8
881,539 + CA265_RS03705 0.42 +0.6
881,620 + CA265_RS03705 0.46 +0.4
881,621 - CA265_RS03705 0.46 +0.0
881,693 + CA265_RS03705 0.49 +1.2
881,694 - CA265_RS03705 0.49 +1.8
881,694 - CA265_RS03705 0.49 +0.4
881,698 + CA265_RS03705 0.50 +0.3
881,727 - CA265_RS03705 0.51 +0.4
881,727 - CA265_RS03705 0.51 +0.2
881,728 + CA265_RS03705 0.51 +0.2
881,729 - CA265_RS03705 0.51 +0.2
881,753 - CA265_RS03705 0.52 +0.0
881,863 + CA265_RS03705 0.58 +1.1
882,103 + CA265_RS03705 0.70 -1.9
882,104 - CA265_RS03705 0.70 +0.4
882,104 - CA265_RS03705 0.70 +0.2
882,187 + CA265_RS03705 0.74 +0.7
882,187 + CA265_RS03705 0.74 -0.1
882,188 - CA265_RS03705 0.74 +0.4
882,188 - CA265_RS03705 0.74 +0.4
882,237 - CA265_RS03705 0.76 +0.1
882,274 - CA265_RS03705 0.78 +0.5
882,275 + CA265_RS03705 0.78 -2.2
882,276 - CA265_RS03705 0.78 -0.0
882,276 - CA265_RS03705 0.78 -0.2
882,295 + CA265_RS03705 0.79 -0.7
882,343 - CA265_RS03705 0.81 -0.1
882,411 - CA265_RS03705 0.85 +0.6
882,443 + CA265_RS03705 0.86 -1.9
882,518 + +2.4
882,518 + CA265_RS03705 0.90 -1.1
882,519 - CA265_RS03705 0.90 +0.3
882,559 + +1.2

Or see this region's nucleotide sequence