Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01940

Experiment: R2A with Carbenicillin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS01935 and CA265_RS01940 are separated by 25 nucleotidesCA265_RS01940 and CA265_RS01945 are separated by 83 nucleotides CA265_RS01935: CA265_RS01935 - hypothetical protein, at 488,749 to 491,874 _RS01935 CA265_RS01940: CA265_RS01940 - hypothetical protein, at 491,900 to 493,762 _RS01940 CA265_RS01945: CA265_RS01945 - hypothetical protein, at 493,846 to 496,143 _RS01945 Position (kb) 491 492 493 494Strain fitness (log2 ratio) -3 -2 -1 0 1at 490.902 kb on - strand, within CA265_RS01935at 490.923 kb on - strand, within CA265_RS01935at 490.966 kb on + strand, within CA265_RS01935at 490.967 kb on - strand, within CA265_RS01935at 490.967 kb on - strand, within CA265_RS01935at 491.053 kb on - strand, within CA265_RS01935at 491.078 kb on - strand, within CA265_RS01935at 491.111 kb on + strand, within CA265_RS01935at 491.111 kb on + strand, within CA265_RS01935at 491.111 kb on + strand, within CA265_RS01935at 491.112 kb on - strand, within CA265_RS01935at 491.112 kb on - strand, within CA265_RS01935at 491.112 kb on - strand, within CA265_RS01935at 491.129 kb on - strand, within CA265_RS01935at 491.129 kb on - strand, within CA265_RS01935at 491.144 kb on - strand, within CA265_RS01935at 491.170 kb on + strand, within CA265_RS01935at 491.184 kb on + strand, within CA265_RS01935at 491.187 kb on - strand, within CA265_RS01935at 491.212 kb on - strand, within CA265_RS01935at 491.212 kb on - strand, within CA265_RS01935at 491.293 kb on - strand, within CA265_RS01935at 491.332 kb on + strand, within CA265_RS01935at 491.344 kb on - strand, within CA265_RS01935at 491.385 kb on - strand, within CA265_RS01935at 491.385 kb on - strand, within CA265_RS01935at 491.397 kb on + strand, within CA265_RS01935at 491.397 kb on + strand, within CA265_RS01935at 491.596 kb on + strandat 491.597 kb on - strandat 491.616 kb on - strandat 491.626 kb on - strandat 491.698 kb on - strandat 491.715 kb on - strandat 491.747 kb on - strandat 491.858 kb on + strandat 491.880 kb on - strandat 491.886 kb on - strandat 491.911 kb on - strandat 491.935 kb on + strandat 491.947 kb on + strandat 491.948 kb on - strandat 492.003 kb on + strandat 492.019 kb on - strandat 492.060 kb on + strandat 492.171 kb on + strand, within CA265_RS01940at 492.199 kb on + strand, within CA265_RS01940at 492.321 kb on - strand, within CA265_RS01940at 492.321 kb on - strand, within CA265_RS01940at 492.364 kb on - strand, within CA265_RS01940at 492.387 kb on + strand, within CA265_RS01940at 492.388 kb on - strand, within CA265_RS01940at 492.403 kb on - strand, within CA265_RS01940at 492.439 kb on + strand, within CA265_RS01940at 492.441 kb on + strand, within CA265_RS01940at 492.509 kb on - strand, within CA265_RS01940at 492.555 kb on - strand, within CA265_RS01940at 492.555 kb on - strand, within CA265_RS01940at 492.568 kb on - strand, within CA265_RS01940at 492.611 kb on - strand, within CA265_RS01940at 492.630 kb on + strandat 492.706 kb on + strand, within CA265_RS01940at 492.707 kb on - strand, within CA265_RS01940at 492.709 kb on + strand, within CA265_RS01940at 492.710 kb on - strand, within CA265_RS01940at 492.725 kb on + strand, within CA265_RS01940at 492.740 kb on + strand, within CA265_RS01940at 492.741 kb on - strand, within CA265_RS01940at 492.787 kb on + strand, within CA265_RS01940at 492.811 kb on - strand, within CA265_RS01940at 492.874 kb on - strand, within CA265_RS01940at 492.889 kb on + strand, within CA265_RS01940at 492.890 kb on - strand, within CA265_RS01940at 492.890 kb on - strand, within CA265_RS01940at 492.962 kb on - strand, within CA265_RS01940at 492.968 kb on + strand, within CA265_RS01940at 492.988 kb on + strand, within CA265_RS01940at 492.993 kb on + strand, within CA265_RS01940at 492.994 kb on - strand, within CA265_RS01940at 492.997 kb on + strand, within CA265_RS01940at 493.019 kb on - strand, within CA265_RS01940at 493.084 kb on + strand, within CA265_RS01940at 493.172 kb on - strand, within CA265_RS01940at 493.172 kb on - strand, within CA265_RS01940at 493.372 kb on + strand, within CA265_RS01940at 493.373 kb on - strand, within CA265_RS01940at 493.373 kb on - strand, within CA265_RS01940at 493.373 kb on - strand, within CA265_RS01940at 493.447 kb on + strand, within CA265_RS01940at 493.447 kb on + strand, within CA265_RS01940at 493.647 kb on - strandat 493.648 kb on + strandat 493.649 kb on - strandat 493.661 kb on - strandat 493.661 kb on - strandat 493.661 kb on - strandat 493.695 kb on + strandat 493.695 kb on + strandat 493.755 kb on + strandat 493.780 kb on - strandat 493.834 kb on + strandat 493.887 kb on - strandat 493.887 kb on - strandat 493.887 kb on - strandat 494.011 kb on - strandat 494.061 kb on - strandat 494.071 kb on - strandat 494.141 kb on + strand, within CA265_RS01945at 494.143 kb on + strand, within CA265_RS01945at 494.143 kb on + strand, within CA265_RS01945at 494.261 kb on + strand, within CA265_RS01945at 494.283 kb on - strand, within CA265_RS01945at 494.283 kb on - strand, within CA265_RS01945at 494.333 kb on - strand, within CA265_RS01945at 494.333 kb on - strand, within CA265_RS01945at 494.337 kb on + strand, within CA265_RS01945at 494.361 kb on + strand, within CA265_RS01945at 494.413 kb on + strand, within CA265_RS01945at 494.526 kb on + strand, within CA265_RS01945at 494.526 kb on + strand, within CA265_RS01945at 494.571 kb on - strand, within CA265_RS01945at 494.636 kb on - strand, within CA265_RS01945at 494.688 kb on - strand, within CA265_RS01945at 494.710 kb on + strand, within CA265_RS01945at 494.710 kb on + strand, within CA265_RS01945at 494.710 kb on + strand, within CA265_RS01945at 494.711 kb on - strand, within CA265_RS01945at 494.711 kb on - strand, within CA265_RS01945

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Carbenicillin 0.2 mg/ml
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490,902 - CA265_RS01935 0.69 +0.3
490,923 - CA265_RS01935 0.70 +0.4
490,966 + CA265_RS01935 0.71 +0.2
490,967 - CA265_RS01935 0.71 -0.3
490,967 - CA265_RS01935 0.71 -0.5
491,053 - CA265_RS01935 0.74 -0.8
491,078 - CA265_RS01935 0.75 -0.2
491,111 + CA265_RS01935 0.76 -0.1
491,111 + CA265_RS01935 0.76 -0.1
491,111 + CA265_RS01935 0.76 +0.1
491,112 - CA265_RS01935 0.76 -0.5
491,112 - CA265_RS01935 0.76 -1.8
491,112 - CA265_RS01935 0.76 -0.6
491,129 - CA265_RS01935 0.76 +0.3
491,129 - CA265_RS01935 0.76 +0.2
491,144 - CA265_RS01935 0.77 -0.7
491,170 + CA265_RS01935 0.77 +1.4
491,184 + CA265_RS01935 0.78 +0.7
491,187 - CA265_RS01935 0.78 +0.1
491,212 - CA265_RS01935 0.79 +0.5
491,212 - CA265_RS01935 0.79 +0.0
491,293 - CA265_RS01935 0.81 -0.3
491,332 + CA265_RS01935 0.83 +0.7
491,344 - CA265_RS01935 0.83 +0.6
491,385 - CA265_RS01935 0.84 +0.2
491,385 - CA265_RS01935 0.84 -0.5
491,397 + CA265_RS01935 0.85 +0.9
491,397 + CA265_RS01935 0.85 +1.5
491,596 + +0.5
491,597 - +0.1
491,616 - -0.7
491,626 - +0.4
491,698 - -0.6
491,715 - +0.5
491,747 - +0.0
491,858 + +0.3
491,880 - +0.6
491,886 - -0.2
491,911 - -0.0
491,935 + +0.5
491,947 + +0.5
491,948 - +0.3
492,003 + -0.6
492,019 - +0.9
492,060 + +1.0
492,171 + CA265_RS01940 0.15 +1.3
492,199 + CA265_RS01940 0.16 +0.5
492,321 - CA265_RS01940 0.23 -0.6
492,321 - CA265_RS01940 0.23 +0.2
492,364 - CA265_RS01940 0.25 +0.4
492,387 + CA265_RS01940 0.26 -0.3
492,388 - CA265_RS01940 0.26 -0.5
492,403 - CA265_RS01940 0.27 -0.3
492,439 + CA265_RS01940 0.29 +0.0
492,441 + CA265_RS01940 0.29 -0.7
492,509 - CA265_RS01940 0.33 -1.0
492,555 - CA265_RS01940 0.35 -0.7
492,555 - CA265_RS01940 0.35 -0.1
492,568 - CA265_RS01940 0.36 +0.2
492,611 - CA265_RS01940 0.38 +0.3
492,630 + -0.5
492,706 + CA265_RS01940 0.43 -0.4
492,707 - CA265_RS01940 0.43 +0.8
492,709 + CA265_RS01940 0.43 +0.7
492,710 - CA265_RS01940 0.43 -0.4
492,725 + CA265_RS01940 0.44 +0.5
492,740 + CA265_RS01940 0.45 +0.7
492,741 - CA265_RS01940 0.45 -0.8
492,787 + CA265_RS01940 0.48 +0.0
492,811 - CA265_RS01940 0.49 +0.6
492,874 - CA265_RS01940 0.52 +0.2
492,889 + CA265_RS01940 0.53 -0.1
492,890 - CA265_RS01940 0.53 +0.2
492,890 - CA265_RS01940 0.53 -0.5
492,962 - CA265_RS01940 0.57 +1.1
492,968 + CA265_RS01940 0.57 +1.3
492,988 + CA265_RS01940 0.58 +0.3
492,993 + CA265_RS01940 0.59 -0.0
492,994 - CA265_RS01940 0.59 -0.1
492,997 + CA265_RS01940 0.59 +0.5
493,019 - CA265_RS01940 0.60 -0.0
493,084 + CA265_RS01940 0.64 -0.9
493,172 - CA265_RS01940 0.68 +0.4
493,172 - CA265_RS01940 0.68 -0.8
493,372 + CA265_RS01940 0.79 +0.3
493,373 - CA265_RS01940 0.79 -1.3
493,373 - CA265_RS01940 0.79 +0.0
493,373 - CA265_RS01940 0.79 -0.9
493,447 + CA265_RS01940 0.83 +0.7
493,447 + CA265_RS01940 0.83 +0.7
493,647 - -0.1
493,648 + +1.0
493,649 - +0.8
493,661 - +0.9
493,661 - +0.6
493,661 - -0.8
493,695 + +1.6
493,695 + +0.2
493,755 + +1.5
493,780 - +0.0
493,834 + +0.3
493,887 - -1.7
493,887 - -0.4
493,887 - +0.2
494,011 - -0.1
494,061 - +0.7
494,071 - -0.5
494,141 + CA265_RS01945 0.13 +0.2
494,143 + CA265_RS01945 0.13 +0.3
494,143 + CA265_RS01945 0.13 -1.7
494,261 + CA265_RS01945 0.18 -0.3
494,283 - CA265_RS01945 0.19 -1.0
494,283 - CA265_RS01945 0.19 -0.4
494,333 - CA265_RS01945 0.21 -0.1
494,333 - CA265_RS01945 0.21 +0.0
494,337 + CA265_RS01945 0.21 +0.5
494,361 + CA265_RS01945 0.22 +0.1
494,413 + CA265_RS01945 0.25 -0.0
494,526 + CA265_RS01945 0.30 +0.2
494,526 + CA265_RS01945 0.30 +0.7
494,571 - CA265_RS01945 0.32 -0.4
494,636 - CA265_RS01945 0.34 -3.0
494,688 - CA265_RS01945 0.37 +1.0
494,710 + CA265_RS01945 0.38 -0.2
494,710 + CA265_RS01945 0.38 -0.2
494,710 + CA265_RS01945 0.38 +0.1
494,711 - CA265_RS01945 0.38 +0.1
494,711 - CA265_RS01945 0.38 +0.3

Or see this region's nucleotide sequence