Experiment: R2A with Carbenicillin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS01930 and CA265_RS01935 are separated by 438 nucleotides CA265_RS01935 and CA265_RS01940 are separated by 25 nucleotides
CA265_RS01930: CA265_RS01930 - hypothetical protein, at 486,739 to 488,310
_RS01930
CA265_RS01935: CA265_RS01935 - hypothetical protein, at 488,749 to 491,874
_RS01935
CA265_RS01940: CA265_RS01940 - hypothetical protein, at 491,900 to 493,762
_RS01940
Position (kb) 488
489
490
491
492 Strain fitness (log2 ratio) -2
-1
0
1 at 487.761 kb on + strand, within CA265_RS01930 at 487.808 kb on - strand, within CA265_RS01930 at 487.846 kb on + strand, within CA265_RS01930 at 487.860 kb on - strand, within CA265_RS01930 at 487.860 kb on - strand, within CA265_RS01930 at 487.860 kb on - strand, within CA265_RS01930 at 487.909 kb on - strand, within CA265_RS01930 at 487.915 kb on - strand, within CA265_RS01930 at 487.931 kb on - strand, within CA265_RS01930 at 487.958 kb on + strand, within CA265_RS01930 at 487.959 kb on - strand, within CA265_RS01930 at 487.966 kb on - strand, within CA265_RS01930 at 487.971 kb on - strand, within CA265_RS01930 at 488.004 kb on + strand, within CA265_RS01930 at 488.031 kb on + strand, within CA265_RS01930 at 488.077 kb on - strand, within CA265_RS01930 at 488.080 kb on + strand, within CA265_RS01930 at 488.158 kb on + strand at 488.159 kb on - strand at 488.159 kb on - strand at 488.224 kb on - strand at 488.296 kb on - strand at 488.496 kb on - strand at 488.549 kb on + strand at 488.549 kb on + strand at 488.613 kb on + strand at 488.613 kb on + strand at 488.613 kb on + strand at 488.626 kb on + strand at 488.646 kb on + strand at 488.646 kb on + strand at 488.647 kb on - strand at 488.662 kb on - strand at 488.666 kb on + strand at 488.670 kb on - strand at 488.759 kb on + strand at 488.812 kb on + strand at 488.852 kb on + strand at 488.852 kb on + strand at 488.853 kb on - strand at 488.976 kb on - strand at 488.996 kb on - strand at 489.029 kb on + strand at 489.133 kb on - strand, within CA265_RS01935 at 489.166 kb on - strand, within CA265_RS01935 at 489.178 kb on - strand, within CA265_RS01935 at 489.192 kb on + strand, within CA265_RS01935 at 489.206 kb on + strand, within CA265_RS01935 at 489.206 kb on + strand, within CA265_RS01935 at 489.207 kb on - strand, within CA265_RS01935 at 489.207 kb on - strand, within CA265_RS01935 at 489.208 kb on + strand, within CA265_RS01935 at 489.209 kb on - strand, within CA265_RS01935 at 489.299 kb on + strand, within CA265_RS01935 at 489.299 kb on + strand, within CA265_RS01935 at 489.299 kb on + strand, within CA265_RS01935 at 489.299 kb on + strand, within CA265_RS01935 at 489.300 kb on - strand, within CA265_RS01935 at 489.403 kb on + strand, within CA265_RS01935 at 489.591 kb on + strand, within CA265_RS01935 at 489.591 kb on + strand, within CA265_RS01935 at 489.619 kb on + strand, within CA265_RS01935 at 489.683 kb on - strand, within CA265_RS01935 at 489.702 kb on + strand, within CA265_RS01935 at 489.703 kb on - strand, within CA265_RS01935 at 489.703 kb on - strand, within CA265_RS01935 at 489.703 kb on - strand, within CA265_RS01935 at 489.714 kb on - strand, within CA265_RS01935 at 489.764 kb on - strand, within CA265_RS01935 at 489.825 kb on + strand, within CA265_RS01935 at 489.882 kb on + strand, within CA265_RS01935 at 489.885 kb on + strand, within CA265_RS01935 at 489.921 kb on + strand, within CA265_RS01935 at 489.921 kb on + strand, within CA265_RS01935 at 489.952 kb on + strand, within CA265_RS01935 at 489.952 kb on + strand, within CA265_RS01935 at 489.953 kb on - strand, within CA265_RS01935 at 489.955 kb on - strand, within CA265_RS01935 at 489.955 kb on - strand, within CA265_RS01935 at 489.988 kb on + strand, within CA265_RS01935 at 489.989 kb on - strand, within CA265_RS01935 at 490.045 kb on - strand, within CA265_RS01935 at 490.083 kb on - strand, within CA265_RS01935 at 490.087 kb on + strand, within CA265_RS01935 at 490.112 kb on + strand, within CA265_RS01935 at 490.120 kb on - strand, within CA265_RS01935 at 490.129 kb on + strand, within CA265_RS01935 at 490.132 kb on - strand, within CA265_RS01935 at 490.134 kb on - strand, within CA265_RS01935 at 490.134 kb on - strand, within CA265_RS01935 at 490.183 kb on + strand, within CA265_RS01935 at 490.184 kb on - strand, within CA265_RS01935 at 490.187 kb on - strand, within CA265_RS01935 at 490.223 kb on + strand, within CA265_RS01935 at 490.224 kb on - strand, within CA265_RS01935 at 490.227 kb on + strand, within CA265_RS01935 at 490.266 kb on + strand, within CA265_RS01935 at 490.316 kb on + strand, within CA265_RS01935 at 490.366 kb on + strand, within CA265_RS01935 at 490.367 kb on - strand, within CA265_RS01935 at 490.426 kb on + strand, within CA265_RS01935 at 490.507 kb on + strand, within CA265_RS01935 at 490.508 kb on - strand, within CA265_RS01935 at 490.508 kb on - strand, within CA265_RS01935 at 490.508 kb on - strand, within CA265_RS01935 at 490.521 kb on - strand, within CA265_RS01935 at 490.572 kb on + strand, within CA265_RS01935 at 490.572 kb on + strand, within CA265_RS01935 at 490.572 kb on + strand, within CA265_RS01935 at 490.576 kb on + strand, within CA265_RS01935 at 490.576 kb on + strand, within CA265_RS01935 at 490.577 kb on - strand, within CA265_RS01935 at 490.577 kb on - strand, within CA265_RS01935 at 490.578 kb on + strand, within CA265_RS01935 at 490.693 kb on - strand, within CA265_RS01935 at 490.774 kb on + strand, within CA265_RS01935 at 490.775 kb on - strand, within CA265_RS01935 at 490.831 kb on - strand, within CA265_RS01935 at 490.831 kb on - strand, within CA265_RS01935 at 490.853 kb on + strand, within CA265_RS01935 at 490.873 kb on - strand, within CA265_RS01935 at 490.902 kb on - strand, within CA265_RS01935 at 490.923 kb on - strand, within CA265_RS01935 at 490.966 kb on + strand, within CA265_RS01935 at 490.967 kb on - strand, within CA265_RS01935 at 490.967 kb on - strand, within CA265_RS01935 at 491.053 kb on - strand, within CA265_RS01935 at 491.078 kb on - strand, within CA265_RS01935 at 491.111 kb on + strand, within CA265_RS01935 at 491.111 kb on + strand, within CA265_RS01935 at 491.111 kb on + strand, within CA265_RS01935 at 491.112 kb on - strand, within CA265_RS01935 at 491.112 kb on - strand, within CA265_RS01935 at 491.112 kb on - strand, within CA265_RS01935 at 491.129 kb on - strand, within CA265_RS01935 at 491.129 kb on - strand, within CA265_RS01935 at 491.144 kb on - strand, within CA265_RS01935 at 491.170 kb on + strand, within CA265_RS01935 at 491.184 kb on + strand, within CA265_RS01935 at 491.187 kb on - strand, within CA265_RS01935 at 491.212 kb on - strand, within CA265_RS01935 at 491.212 kb on - strand, within CA265_RS01935 at 491.293 kb on - strand, within CA265_RS01935 at 491.332 kb on + strand, within CA265_RS01935 at 491.344 kb on - strand, within CA265_RS01935 at 491.385 kb on - strand, within CA265_RS01935 at 491.385 kb on - strand, within CA265_RS01935 at 491.397 kb on + strand, within CA265_RS01935 at 491.397 kb on + strand, within CA265_RS01935 at 491.596 kb on + strand at 491.597 kb on - strand at 491.616 kb on - strand at 491.626 kb on - strand at 491.698 kb on - strand at 491.715 kb on - strand at 491.747 kb on - strand at 491.858 kb on + strand at 491.880 kb on - strand at 491.886 kb on - strand at 491.911 kb on - strand at 491.935 kb on + strand at 491.947 kb on + strand at 491.948 kb on - strand at 492.003 kb on + strand at 492.019 kb on - strand at 492.060 kb on + strand at 492.171 kb on + strand, within CA265_RS01940 at 492.199 kb on + strand, within CA265_RS01940 at 492.321 kb on - strand, within CA265_RS01940 at 492.321 kb on - strand, within CA265_RS01940 at 492.364 kb on - strand, within CA265_RS01940 at 492.387 kb on + strand, within CA265_RS01940 at 492.388 kb on - strand, within CA265_RS01940 at 492.403 kb on - strand, within CA265_RS01940 at 492.439 kb on + strand, within CA265_RS01940 at 492.441 kb on + strand, within CA265_RS01940 at 492.509 kb on - strand, within CA265_RS01940 at 492.555 kb on - strand, within CA265_RS01940 at 492.555 kb on - strand, within CA265_RS01940 at 492.568 kb on - strand, within CA265_RS01940 at 492.611 kb on - strand, within CA265_RS01940 at 492.630 kb on + strand at 492.706 kb on + strand, within CA265_RS01940 at 492.707 kb on - strand, within CA265_RS01940 at 492.709 kb on + strand, within CA265_RS01940 at 492.710 kb on - strand, within CA265_RS01940 at 492.725 kb on + strand, within CA265_RS01940 at 492.740 kb on + strand, within CA265_RS01940 at 492.741 kb on - strand, within CA265_RS01940 at 492.787 kb on + strand, within CA265_RS01940 at 492.811 kb on - strand, within CA265_RS01940 at 492.874 kb on - strand, within CA265_RS01940
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Carbenicillin 0.2 mg/ml remove 487,761 + CA265_RS01930 0.65 -0.3 487,808 - CA265_RS01930 0.68 -0.3 487,846 + CA265_RS01930 0.70 -0.7 487,860 - CA265_RS01930 0.71 -0.7 487,860 - CA265_RS01930 0.71 -1.1 487,860 - CA265_RS01930 0.71 -0.1 487,909 - CA265_RS01930 0.74 +0.5 487,915 - CA265_RS01930 0.75 -0.1 487,931 - CA265_RS01930 0.76 +0.2 487,958 + CA265_RS01930 0.78 -0.5 487,959 - CA265_RS01930 0.78 -0.5 487,966 - CA265_RS01930 0.78 -0.1 487,971 - CA265_RS01930 0.78 -0.7 488,004 + CA265_RS01930 0.80 -1.7 488,031 + CA265_RS01930 0.82 +1.0 488,077 - CA265_RS01930 0.85 -1.8 488,080 + CA265_RS01930 0.85 -0.7 488,158 + -0.1 488,159 - -0.2 488,159 - -0.2 488,224 - +0.8 488,296 - -0.5 488,496 - -0.0 488,549 + +1.2 488,549 + +0.5 488,613 + -0.3 488,613 + +0.3 488,613 + -0.2 488,626 + +0.4 488,646 + -0.1 488,646 + -0.2 488,647 - -0.1 488,662 - +0.2 488,666 + -0.8 488,670 - +0.3 488,759 + -1.1 488,812 + -0.2 488,852 + -0.8 488,852 + +0.3 488,853 - +0.0 488,976 - +0.9 488,996 - -0.5 489,029 + -0.1 489,133 - CA265_RS01935 0.12 +0.0 489,166 - CA265_RS01935 0.13 +0.5 489,178 - CA265_RS01935 0.14 +0.4 489,192 + CA265_RS01935 0.14 +1.5 489,206 + CA265_RS01935 0.15 -1.1 489,206 + CA265_RS01935 0.15 -1.1 489,207 - CA265_RS01935 0.15 +0.2 489,207 - CA265_RS01935 0.15 +0.0 489,208 + CA265_RS01935 0.15 +0.1 489,209 - CA265_RS01935 0.15 +0.1 489,299 + CA265_RS01935 0.18 -0.9 489,299 + CA265_RS01935 0.18 -0.1 489,299 + CA265_RS01935 0.18 -0.2 489,299 + CA265_RS01935 0.18 +1.5 489,300 - CA265_RS01935 0.18 -0.4 489,403 + CA265_RS01935 0.21 +0.3 489,591 + CA265_RS01935 0.27 +0.4 489,591 + CA265_RS01935 0.27 +1.0 489,619 + CA265_RS01935 0.28 +0.4 489,683 - CA265_RS01935 0.30 +0.1 489,702 + CA265_RS01935 0.30 +0.4 489,703 - CA265_RS01935 0.31 -0.0 489,703 - CA265_RS01935 0.31 +0.7 489,703 - CA265_RS01935 0.31 -0.6 489,714 - CA265_RS01935 0.31 +0.2 489,764 - CA265_RS01935 0.32 +0.4 489,825 + CA265_RS01935 0.34 +0.5 489,882 + CA265_RS01935 0.36 +0.3 489,885 + CA265_RS01935 0.36 +0.2 489,921 + CA265_RS01935 0.37 +0.9 489,921 + CA265_RS01935 0.37 +1.0 489,952 + CA265_RS01935 0.38 +0.2 489,952 + CA265_RS01935 0.38 -0.7 489,953 - CA265_RS01935 0.39 +0.8 489,955 - CA265_RS01935 0.39 -2.7 489,955 - CA265_RS01935 0.39 -0.7 489,988 + CA265_RS01935 0.40 +0.5 489,989 - CA265_RS01935 0.40 -0.5 490,045 - CA265_RS01935 0.41 +0.2 490,083 - CA265_RS01935 0.43 +1.0 490,087 + CA265_RS01935 0.43 +0.7 490,112 + CA265_RS01935 0.44 +0.7 490,120 - CA265_RS01935 0.44 +0.1 490,129 + CA265_RS01935 0.44 +0.7 490,132 - CA265_RS01935 0.44 +0.3 490,134 - CA265_RS01935 0.44 +1.1 490,134 - CA265_RS01935 0.44 -0.1 490,183 + CA265_RS01935 0.46 -0.1 490,184 - CA265_RS01935 0.46 +0.6 490,187 - CA265_RS01935 0.46 -0.1 490,223 + CA265_RS01935 0.47 +1.3 490,224 - CA265_RS01935 0.47 -0.1 490,227 + CA265_RS01935 0.47 +0.7 490,266 + CA265_RS01935 0.49 +0.5 490,316 + CA265_RS01935 0.50 -0.6 490,366 + CA265_RS01935 0.52 +0.5 490,367 - CA265_RS01935 0.52 -0.5 490,426 + CA265_RS01935 0.54 -0.1 490,507 + CA265_RS01935 0.56 -0.8 490,508 - CA265_RS01935 0.56 -0.2 490,508 - CA265_RS01935 0.56 -0.1 490,508 - CA265_RS01935 0.56 -0.1 490,521 - CA265_RS01935 0.57 -0.1 490,572 + CA265_RS01935 0.58 -0.3 490,572 + CA265_RS01935 0.58 +0.9 490,572 + CA265_RS01935 0.58 +0.3 490,576 + CA265_RS01935 0.58 +0.3 490,576 + CA265_RS01935 0.58 +0.4 490,577 - CA265_RS01935 0.58 +0.1 490,577 - CA265_RS01935 0.58 -2.0 490,578 + CA265_RS01935 0.59 +1.0 490,693 - CA265_RS01935 0.62 -0.0 490,774 + CA265_RS01935 0.65 +0.8 490,775 - CA265_RS01935 0.65 +0.3 490,831 - CA265_RS01935 0.67 +0.1 490,831 - CA265_RS01935 0.67 -0.1 490,853 + CA265_RS01935 0.67 +0.6 490,873 - CA265_RS01935 0.68 -2.1 490,902 - CA265_RS01935 0.69 +0.3 490,923 - CA265_RS01935 0.70 +0.4 490,966 + CA265_RS01935 0.71 +0.2 490,967 - CA265_RS01935 0.71 -0.3 490,967 - CA265_RS01935 0.71 -0.5 491,053 - CA265_RS01935 0.74 -0.8 491,078 - CA265_RS01935 0.75 -0.2 491,111 + CA265_RS01935 0.76 -0.1 491,111 + CA265_RS01935 0.76 -0.1 491,111 + CA265_RS01935 0.76 +0.1 491,112 - CA265_RS01935 0.76 -0.5 491,112 - CA265_RS01935 0.76 -1.8 491,112 - CA265_RS01935 0.76 -0.6 491,129 - CA265_RS01935 0.76 +0.3 491,129 - CA265_RS01935 0.76 +0.2 491,144 - CA265_RS01935 0.77 -0.7 491,170 + CA265_RS01935 0.77 +1.4 491,184 + CA265_RS01935 0.78 +0.7 491,187 - CA265_RS01935 0.78 +0.1 491,212 - CA265_RS01935 0.79 +0.5 491,212 - CA265_RS01935 0.79 +0.0 491,293 - CA265_RS01935 0.81 -0.3 491,332 + CA265_RS01935 0.83 +0.7 491,344 - CA265_RS01935 0.83 +0.6 491,385 - CA265_RS01935 0.84 +0.2 491,385 - CA265_RS01935 0.84 -0.5 491,397 + CA265_RS01935 0.85 +0.9 491,397 + CA265_RS01935 0.85 +1.5 491,596 + +0.5 491,597 - +0.1 491,616 - -0.7 491,626 - +0.4 491,698 - -0.6 491,715 - +0.5 491,747 - +0.0 491,858 + +0.3 491,880 - +0.6 491,886 - -0.2 491,911 - -0.0 491,935 + +0.5 491,947 + +0.5 491,948 - +0.3 492,003 + -0.6 492,019 - +0.9 492,060 + +1.0 492,171 + CA265_RS01940 0.15 +1.3 492,199 + CA265_RS01940 0.16 +0.5 492,321 - CA265_RS01940 0.23 -0.6 492,321 - CA265_RS01940 0.23 +0.2 492,364 - CA265_RS01940 0.25 +0.4 492,387 + CA265_RS01940 0.26 -0.3 492,388 - CA265_RS01940 0.26 -0.5 492,403 - CA265_RS01940 0.27 -0.3 492,439 + CA265_RS01940 0.29 +0.0 492,441 + CA265_RS01940 0.29 -0.7 492,509 - CA265_RS01940 0.33 -1.0 492,555 - CA265_RS01940 0.35 -0.7 492,555 - CA265_RS01940 0.35 -0.1 492,568 - CA265_RS01940 0.36 +0.2 492,611 - CA265_RS01940 0.38 +0.3 492,630 + -0.5 492,706 + CA265_RS01940 0.43 -0.4 492,707 - CA265_RS01940 0.43 +0.8 492,709 + CA265_RS01940 0.43 +0.7 492,710 - CA265_RS01940 0.43 -0.4 492,725 + CA265_RS01940 0.44 +0.5 492,740 + CA265_RS01940 0.45 +0.7 492,741 - CA265_RS01940 0.45 -0.8 492,787 + CA265_RS01940 0.48 +0.0 492,811 - CA265_RS01940 0.49 +0.6 492,874 - CA265_RS01940 0.52 +0.2
Or see this region's nucleotide sequence