Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01920

Experiment: R2A with Carbenicillin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS01915 and CA265_RS01920 are separated by 11 nucleotidesCA265_RS01920 and CA265_RS01925 are separated by 229 nucleotides CA265_RS01915: CA265_RS01915 - SusC/RagA family protein, at 479,791 to 482,955 _RS01915 CA265_RS01920: CA265_RS01920 - RagB/SusD family nutrient uptake outer membrane protein, at 482,967 to 484,972 _RS01920 CA265_RS01925: CA265_RS01925 - aryl-sulfate sulfohydrolase, at 485,202 to 486,632 _RS01925 Position (kb) 482 483 484 485Strain fitness (log2 ratio) -2 -1 0 1 2at 481.982 kb on + strand, within CA265_RS01915at 482.012 kb on + strand, within CA265_RS01915at 482.013 kb on - strand, within CA265_RS01915at 482.026 kb on - strand, within CA265_RS01915at 482.057 kb on + strand, within CA265_RS01915at 482.079 kb on + strand, within CA265_RS01915at 482.079 kb on + strand, within CA265_RS01915at 482.158 kb on - strand, within CA265_RS01915at 482.164 kb on - strand, within CA265_RS01915at 482.169 kb on + strand, within CA265_RS01915at 482.170 kb on - strand, within CA265_RS01915at 482.170 kb on - strand, within CA265_RS01915at 482.176 kb on + strand, within CA265_RS01915at 482.177 kb on - strand, within CA265_RS01915at 482.179 kb on - strand, within CA265_RS01915at 482.180 kb on + strand, within CA265_RS01915at 482.180 kb on + strand, within CA265_RS01915at 482.181 kb on - strand, within CA265_RS01915at 482.222 kb on + strand, within CA265_RS01915at 482.222 kb on + strand, within CA265_RS01915at 482.319 kb on + strand, within CA265_RS01915at 482.319 kb on + strand, within CA265_RS01915at 482.320 kb on - strand, within CA265_RS01915at 482.323 kb on + strand, within CA265_RS01915at 482.351 kb on + strand, within CA265_RS01915at 482.372 kb on + strand, within CA265_RS01915at 482.397 kb on + strand, within CA265_RS01915at 482.406 kb on + strand, within CA265_RS01915at 482.434 kb on - strand, within CA265_RS01915at 482.464 kb on - strand, within CA265_RS01915at 482.517 kb on + strand, within CA265_RS01915at 482.518 kb on - strand, within CA265_RS01915at 482.520 kb on + strandat 482.531 kb on - strand, within CA265_RS01915at 482.531 kb on - strand, within CA265_RS01915at 482.534 kb on - strand, within CA265_RS01915at 482.559 kb on - strand, within CA265_RS01915at 482.559 kb on - strand, within CA265_RS01915at 482.563 kb on + strand, within CA265_RS01915at 482.569 kb on - strand, within CA265_RS01915at 482.613 kb on + strand, within CA265_RS01915at 482.674 kb on - strandat 482.686 kb on - strandat 482.686 kb on - strandat 482.703 kb on - strandat 482.824 kb on - strandat 483.093 kb on + strandat 483.094 kb on - strandat 483.123 kb on + strandat 483.143 kb on + strandat 483.148 kb on + strandat 483.174 kb on + strand, within CA265_RS01920at 483.175 kb on - strand, within CA265_RS01920at 483.465 kb on - strand, within CA265_RS01920at 483.466 kb on + strand, within CA265_RS01920at 483.467 kb on - strand, within CA265_RS01920at 483.496 kb on + strand, within CA265_RS01920at 483.510 kb on - strand, within CA265_RS01920at 483.592 kb on - strand, within CA265_RS01920at 483.592 kb on - strand, within CA265_RS01920at 483.632 kb on - strand, within CA265_RS01920at 483.772 kb on + strand, within CA265_RS01920at 483.772 kb on + strand, within CA265_RS01920at 483.977 kb on + strand, within CA265_RS01920at 483.989 kb on - strand, within CA265_RS01920at 484.104 kb on + strand, within CA265_RS01920at 484.107 kb on - strand, within CA265_RS01920at 484.224 kb on - strand, within CA265_RS01920at 484.234 kb on + strand, within CA265_RS01920at 484.235 kb on - strand, within CA265_RS01920at 484.236 kb on + strand, within CA265_RS01920at 484.260 kb on + strand, within CA265_RS01920at 484.260 kb on + strand, within CA265_RS01920at 484.261 kb on - strand, within CA265_RS01920at 484.262 kb on + strand, within CA265_RS01920at 484.263 kb on - strand, within CA265_RS01920at 484.292 kb on - strand, within CA265_RS01920at 484.317 kb on - strand, within CA265_RS01920at 484.330 kb on - strand, within CA265_RS01920at 484.332 kb on - strand, within CA265_RS01920at 484.366 kb on - strand, within CA265_RS01920at 484.375 kb on - strand, within CA265_RS01920at 484.375 kb on - strand, within CA265_RS01920at 484.376 kb on + strand, within CA265_RS01920at 484.378 kb on + strand, within CA265_RS01920at 484.379 kb on - strand, within CA265_RS01920at 484.428 kb on + strand, within CA265_RS01920at 484.475 kb on + strand, within CA265_RS01920at 484.496 kb on + strand, within CA265_RS01920at 484.560 kb on + strand, within CA265_RS01920at 484.565 kb on + strand, within CA265_RS01920at 484.611 kb on + strand, within CA265_RS01920at 484.680 kb on - strand, within CA265_RS01920at 484.685 kb on - strand, within CA265_RS01920at 484.707 kb on + strand, within CA265_RS01920at 484.778 kb on + strandat 484.847 kb on + strandat 484.847 kb on + strandat 484.848 kb on - strandat 484.848 kb on - strandat 484.986 kb on - strandat 485.052 kb on - strandat 485.077 kb on + strandat 485.077 kb on + strandat 485.078 kb on - strandat 485.080 kb on - strandat 485.099 kb on - strandat 485.112 kb on - strandat 485.112 kb on - strandat 485.168 kb on - strandat 485.179 kb on - strandat 485.240 kb on - strandat 485.333 kb on + strandat 485.408 kb on - strand, within CA265_RS01925at 485.476 kb on - strand, within CA265_RS01925at 485.496 kb on + strand, within CA265_RS01925at 485.503 kb on + strand, within CA265_RS01925at 485.510 kb on + strand, within CA265_RS01925at 485.562 kb on - strand, within CA265_RS01925at 485.616 kb on + strand, within CA265_RS01925at 485.621 kb on + strand, within CA265_RS01925at 485.622 kb on - strand, within CA265_RS01925at 485.622 kb on - strandat 485.757 kb on - strand, within CA265_RS01925at 485.757 kb on - strand, within CA265_RS01925at 485.817 kb on + strand, within CA265_RS01925at 485.913 kb on + strand, within CA265_RS01925at 485.913 kb on + strand, within CA265_RS01925at 485.914 kb on - strand, within CA265_RS01925at 485.928 kb on + strand, within CA265_RS01925

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Carbenicillin 0.2 mg/ml
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481,982 + CA265_RS01915 0.69 -0.4
482,012 + CA265_RS01915 0.70 -0.1
482,013 - CA265_RS01915 0.70 +0.2
482,026 - CA265_RS01915 0.71 +0.2
482,057 + CA265_RS01915 0.72 +0.3
482,079 + CA265_RS01915 0.72 -1.1
482,079 + CA265_RS01915 0.72 +0.4
482,158 - CA265_RS01915 0.75 +0.7
482,164 - CA265_RS01915 0.75 -0.7
482,169 + CA265_RS01915 0.75 +0.3
482,170 - CA265_RS01915 0.75 -0.7
482,170 - CA265_RS01915 0.75 +0.4
482,176 + CA265_RS01915 0.75 -0.5
482,177 - CA265_RS01915 0.75 -0.0
482,179 - CA265_RS01915 0.75 +0.2
482,180 + CA265_RS01915 0.75 +0.7
482,180 + CA265_RS01915 0.75 +0.4
482,181 - CA265_RS01915 0.76 +0.0
482,222 + CA265_RS01915 0.77 -0.7
482,222 + CA265_RS01915 0.77 +0.7
482,319 + CA265_RS01915 0.80 +0.6
482,319 + CA265_RS01915 0.80 +0.1
482,320 - CA265_RS01915 0.80 +0.5
482,323 + CA265_RS01915 0.80 -0.6
482,351 + CA265_RS01915 0.81 -0.1
482,372 + CA265_RS01915 0.82 +0.1
482,397 + CA265_RS01915 0.82 -0.3
482,406 + CA265_RS01915 0.83 +0.9
482,434 - CA265_RS01915 0.84 -0.2
482,464 - CA265_RS01915 0.84 +0.0
482,517 + CA265_RS01915 0.86 +0.2
482,518 - CA265_RS01915 0.86 +0.5
482,520 + +2.5
482,531 - CA265_RS01915 0.87 +0.5
482,531 - CA265_RS01915 0.87 +0.7
482,534 - CA265_RS01915 0.87 +1.1
482,559 - CA265_RS01915 0.87 +0.1
482,559 - CA265_RS01915 0.87 +0.6
482,563 + CA265_RS01915 0.88 +0.4
482,569 - CA265_RS01915 0.88 +0.4
482,613 + CA265_RS01915 0.89 -1.3
482,674 - -0.0
482,686 - -0.3
482,686 - +0.2
482,703 - +0.0
482,824 - +0.5
483,093 + +0.5
483,094 - -2.0
483,123 + +0.7
483,143 + -0.2
483,148 + -0.2
483,174 + CA265_RS01920 0.10 +0.7
483,175 - CA265_RS01920 0.10 +0.6
483,465 - CA265_RS01920 0.25 +0.2
483,466 + CA265_RS01920 0.25 -0.1
483,467 - CA265_RS01920 0.25 +0.2
483,496 + CA265_RS01920 0.26 +0.6
483,510 - CA265_RS01920 0.27 -0.4
483,592 - CA265_RS01920 0.31 -0.3
483,592 - CA265_RS01920 0.31 +1.1
483,632 - CA265_RS01920 0.33 -0.5
483,772 + CA265_RS01920 0.40 +0.5
483,772 + CA265_RS01920 0.40 +0.0
483,977 + CA265_RS01920 0.50 +0.1
483,989 - CA265_RS01920 0.51 +0.2
484,104 + CA265_RS01920 0.57 +1.1
484,107 - CA265_RS01920 0.57 +0.1
484,224 - CA265_RS01920 0.63 +1.5
484,234 + CA265_RS01920 0.63 -2.2
484,235 - CA265_RS01920 0.63 +0.7
484,236 + CA265_RS01920 0.63 +0.6
484,260 + CA265_RS01920 0.64 -0.6
484,260 + CA265_RS01920 0.64 +0.3
484,261 - CA265_RS01920 0.65 -0.3
484,262 + CA265_RS01920 0.65 -0.3
484,263 - CA265_RS01920 0.65 -0.6
484,292 - CA265_RS01920 0.66 -0.8
484,317 - CA265_RS01920 0.67 +0.6
484,330 - CA265_RS01920 0.68 -0.1
484,332 - CA265_RS01920 0.68 +0.8
484,366 - CA265_RS01920 0.70 +0.8
484,375 - CA265_RS01920 0.70 -0.6
484,375 - CA265_RS01920 0.70 -0.8
484,376 + CA265_RS01920 0.70 -0.1
484,378 + CA265_RS01920 0.70 -0.3
484,379 - CA265_RS01920 0.70 -0.1
484,428 + CA265_RS01920 0.73 -1.0
484,475 + CA265_RS01920 0.75 -0.1
484,496 + CA265_RS01920 0.76 +1.1
484,560 + CA265_RS01920 0.79 -0.7
484,565 + CA265_RS01920 0.80 +0.3
484,611 + CA265_RS01920 0.82 +0.4
484,680 - CA265_RS01920 0.85 +0.7
484,685 - CA265_RS01920 0.86 +0.5
484,707 + CA265_RS01920 0.87 -0.1
484,778 + +0.0
484,847 + +1.9
484,847 + -0.6
484,848 - -0.6
484,848 - -1.1
484,986 - +0.2
485,052 - +1.0
485,077 + -0.2
485,077 + -0.0
485,078 - -1.6
485,080 - -1.1
485,099 - +0.4
485,112 - -0.6
485,112 - -0.5
485,168 - -0.3
485,179 - -0.2
485,240 - -0.2
485,333 + +0.5
485,408 - CA265_RS01925 0.14 +0.2
485,476 - CA265_RS01925 0.19 +0.3
485,496 + CA265_RS01925 0.21 +0.4
485,503 + CA265_RS01925 0.21 -0.4
485,510 + CA265_RS01925 0.22 -0.1
485,562 - CA265_RS01925 0.25 +0.3
485,616 + CA265_RS01925 0.29 +0.4
485,621 + CA265_RS01925 0.29 +1.1
485,622 - CA265_RS01925 0.29 +0.7
485,622 - +1.5
485,757 - CA265_RS01925 0.39 +0.3
485,757 - CA265_RS01925 0.39 +1.3
485,817 + CA265_RS01925 0.43 +0.3
485,913 + CA265_RS01925 0.50 -0.4
485,913 + CA265_RS01925 0.50 -0.5
485,914 - CA265_RS01925 0.50 -0.0
485,928 + CA265_RS01925 0.51 +0.0

Or see this region's nucleotide sequence