Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_940

Experiment: D-Fructose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_938 and Ac3H11_939 are separated by 125 nucleotidesAc3H11_939 and Ac3H11_940 are separated by 93 nucleotidesAc3H11_940 and Ac3H11_941 are separated by 163 nucleotides Ac3H11_938 - FIG00582348: hypothetical protein, at 58,259 to 58,843 _938 Ac3H11_939 - COG1451: Predicted metal-dependent hydrolase, at 58,969 to 59,508 _939 Ac3H11_940 - Glutamate racemase (EC 5.1.1.3), at 59,602 to 60,495 _940 Ac3H11_941 - Fumarate hydratase class I, aerobic (EC 4.2.1.2), at 60,659 to 62,236 _941 Position (kb) 59 60 61Strain fitness (log2 ratio) -2 -1 0 1 2at 58.934 kb on + strandat 58.934 kb on + strandat 58.934 kb on + strandat 58.934 kb on + strandat 58.934 kb on + strandat 58.935 kb on - strandat 58.935 kb on - strandat 58.935 kb on - strandat 58.935 kb on - strandat 59.002 kb on + strandat 59.003 kb on - strandat 59.003 kb on - strandat 59.014 kb on + strandat 59.089 kb on + strand, within Ac3H11_939at 59.089 kb on + strand, within Ac3H11_939at 59.089 kb on + strand, within Ac3H11_939at 59.090 kb on - strand, within Ac3H11_939at 59.128 kb on + strand, within Ac3H11_939at 59.129 kb on - strand, within Ac3H11_939at 59.129 kb on - strand, within Ac3H11_939at 59.129 kb on - strand, within Ac3H11_939at 59.129 kb on - strand, within Ac3H11_939at 59.134 kb on + strand, within Ac3H11_939at 59.134 kb on + strand, within Ac3H11_939at 59.134 kb on + strand, within Ac3H11_939at 59.159 kb on - strand, within Ac3H11_939at 59.392 kb on + strand, within Ac3H11_939at 59.392 kb on + strand, within Ac3H11_939at 59.392 kb on + strand, within Ac3H11_939at 59.392 kb on + strand, within Ac3H11_939at 59.392 kb on + strand, within Ac3H11_939at 59.392 kb on + strand, within Ac3H11_939at 59.392 kb on + strand, within Ac3H11_939at 59.393 kb on - strand, within Ac3H11_939at 59.393 kb on - strand, within Ac3H11_939at 59.393 kb on - strand, within Ac3H11_939at 59.393 kb on - strand, within Ac3H11_939at 59.393 kb on - strand, within Ac3H11_939at 59.422 kb on + strand, within Ac3H11_939at 59.422 kb on + strand, within Ac3H11_939at 59.431 kb on + strand, within Ac3H11_939at 59.431 kb on + strand, within Ac3H11_939at 59.431 kb on + strand, within Ac3H11_939at 59.432 kb on - strand, within Ac3H11_939at 59.432 kb on - strand, within Ac3H11_939at 59.452 kb on + strand, within Ac3H11_939at 59.452 kb on + strand, within Ac3H11_939at 59.452 kb on + strand, within Ac3H11_939at 59.452 kb on + strand, within Ac3H11_939at 59.453 kb on - strand, within Ac3H11_939at 59.453 kb on - strand, within Ac3H11_939at 59.453 kb on - strand, within Ac3H11_939at 59.453 kb on - strand, within Ac3H11_939at 59.535 kb on + strandat 59.536 kb on - strandat 59.542 kb on - strandat 59.557 kb on - strandat 59.557 kb on - strandat 60.537 kb on + strandat 60.537 kb on + strandat 60.538 kb on - strandat 60.626 kb on + strandat 60.626 kb on + strandat 60.626 kb on + strandat 60.626 kb on + strandat 60.626 kb on + strandat 60.626 kb on + strandat 60.626 kb on + strandat 60.626 kb on + strandat 60.626 kb on + strandat 60.627 kb on - strandat 60.627 kb on - strandat 60.627 kb on - strandat 60.627 kb on - strandat 60.627 kb on - strandat 60.627 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
remove
58,934 + -1.8
58,934 + -0.9
58,934 + +0.5
58,934 + -0.3
58,934 + -0.8
58,935 - +0.0
58,935 - -0.0
58,935 - +1.2
58,935 - -0.5
59,002 + +0.4
59,003 - +0.4
59,003 - -0.1
59,014 + +0.6
59,089 + Ac3H11_939 0.22 +0.3
59,089 + Ac3H11_939 0.22 -1.1
59,089 + Ac3H11_939 0.22 +0.9
59,090 - Ac3H11_939 0.22 -1.4
59,128 + Ac3H11_939 0.29 -0.8
59,129 - Ac3H11_939 0.30 +0.2
59,129 - Ac3H11_939 0.30 +0.3
59,129 - Ac3H11_939 0.30 +0.4
59,129 - Ac3H11_939 0.30 +0.3
59,134 + Ac3H11_939 0.31 -0.2
59,134 + Ac3H11_939 0.31 -1.7
59,134 + Ac3H11_939 0.31 -0.2
59,159 - Ac3H11_939 0.35 -1.3
59,392 + Ac3H11_939 0.78 -0.6
59,392 + Ac3H11_939 0.78 -0.9
59,392 + Ac3H11_939 0.78 +0.5
59,392 + Ac3H11_939 0.78 +2.4
59,392 + Ac3H11_939 0.78 +0.7
59,392 + Ac3H11_939 0.78 +0.3
59,392 + Ac3H11_939 0.78 -0.9
59,393 - Ac3H11_939 0.79 -0.1
59,393 - Ac3H11_939 0.79 +0.4
59,393 - Ac3H11_939 0.79 -0.0
59,393 - Ac3H11_939 0.79 -0.0
59,393 - Ac3H11_939 0.79 +0.5
59,422 + Ac3H11_939 0.84 +0.9
59,422 + Ac3H11_939 0.84 -0.7
59,431 + Ac3H11_939 0.86 -2.4
59,431 + Ac3H11_939 0.86 -0.6
59,431 + Ac3H11_939 0.86 +0.1
59,432 - Ac3H11_939 0.86 -0.6
59,432 - Ac3H11_939 0.86 +0.4
59,452 + Ac3H11_939 0.89 -0.5
59,452 + Ac3H11_939 0.89 +0.8
59,452 + Ac3H11_939 0.89 +0.5
59,452 + Ac3H11_939 0.89 +0.4
59,453 - Ac3H11_939 0.90 -0.3
59,453 - Ac3H11_939 0.90 +0.0
59,453 - Ac3H11_939 0.90 +0.5
59,453 - Ac3H11_939 0.90 -0.1
59,535 + +0.1
59,536 - -0.2
59,542 - -0.5
59,557 - -0.1
59,557 - -0.2
60,537 + -0.5
60,537 + -2.2
60,538 - -0.8
60,626 + +0.4
60,626 + -0.4
60,626 + +0.5
60,626 + -0.4
60,626 + -0.9
60,626 + +0.4
60,626 + +0.1
60,626 + +0.5
60,626 + +0.1
60,627 - -0.8
60,627 - -0.0
60,627 - +0.5
60,627 - +0.6
60,627 - -1.5
60,627 - -0.3

Or see this region's nucleotide sequence