Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2789

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2787 and Ac3H11_2788 are separated by 70 nucleotidesAc3H11_2788 and Ac3H11_2789 overlap by 4 nucleotidesAc3H11_2789 and Ac3H11_2790 are separated by 234 nucleotides Ac3H11_2787 - hypothetical protein, at 1,094,143 to 1,094,589 _2787 Ac3H11_2788 - hypothetical protein, at 1,094,660 to 1,094,908 _2788 Ac3H11_2789 - hypothetical protein, at 1,094,905 to 1,095,249 _2789 Ac3H11_2790 - DNA primase (EC 2.7.7.-), phage-associated, at 1,095,484 to 1,096,488 _2790 Position (kb) 1094 1095 1096Strain fitness (log2 ratio) -1 0 1at 1093.944 kb on - strandat 1094.019 kb on + strandat 1094.020 kb on - strandat 1094.020 kb on - strandat 1094.733 kb on - strand, within Ac3H11_2788at 1094.733 kb on - strand, within Ac3H11_2788at 1095.071 kb on - strand, within Ac3H11_2789at 1095.071 kb on - strand, within Ac3H11_2789at 1095.071 kb on - strand, within Ac3H11_2789at 1095.325 kb on + strandat 1095.325 kb on + strandat 1095.670 kb on + strand, within Ac3H11_2790at 1095.670 kb on + strand, within Ac3H11_2790at 1095.919 kb on - strand, within Ac3H11_2790at 1096.063 kb on + strand, within Ac3H11_2790at 1096.064 kb on - strand, within Ac3H11_2790at 1096.064 kb on - strand, within Ac3H11_2790

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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1,093,944 - -0.6
1,094,019 + +1.3
1,094,020 - -0.6
1,094,020 - +0.5
1,094,733 - Ac3H11_2788 0.29 -1.0
1,094,733 - Ac3H11_2788 0.29 -0.8
1,095,071 - Ac3H11_2789 0.48 -1.2
1,095,071 - Ac3H11_2789 0.48 -0.2
1,095,071 - Ac3H11_2789 0.48 +0.0
1,095,325 + +0.8
1,095,325 + -0.2
1,095,670 + Ac3H11_2790 0.19 +0.5
1,095,670 + Ac3H11_2790 0.19 -0.3
1,095,919 - Ac3H11_2790 0.43 -0.1
1,096,063 + Ac3H11_2790 0.58 -0.2
1,096,064 - Ac3H11_2790 0.58 +0.0
1,096,064 - Ac3H11_2790 0.58 +0.2

Or see this region's nucleotide sequence