Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_19890

Experiment: D-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_19880 and AO353_19885 are separated by 32 nucleotidesAO353_19885 and AO353_19890 overlap by 4 nucleotidesAO353_19890 and AO353_19895 are separated by 163 nucleotides AO353_19880: AO353_19880 - universal stress protein, at 4,370,054 to 4,370,935 _19880 AO353_19885: AO353_19885 - ion transporter, at 4,370,968 to 4,371,393 _19885 AO353_19890: AO353_19890 - cell division protein FtsH, at 4,371,390 to 4,373,213 _19890 AO353_19895: AO353_19895 - ornithine aminotransferase, at 4,373,377 to 4,374,024 _19895 Position (kb) 4371 4372 4373 4374Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4370.444 kb on + strand, within AO353_19880at 4370.445 kb on - strand, within AO353_19880at 4370.474 kb on + strand, within AO353_19880at 4370.475 kb on - strand, within AO353_19880at 4370.632 kb on + strand, within AO353_19880at 4370.632 kb on + strand, within AO353_19880at 4370.632 kb on + strand, within AO353_19880at 4370.633 kb on - strand, within AO353_19880at 4370.633 kb on - strand, within AO353_19880at 4370.645 kb on + strand, within AO353_19880at 4370.646 kb on - strand, within AO353_19880at 4370.773 kb on + strand, within AO353_19880at 4370.773 kb on + strand, within AO353_19880at 4370.773 kb on + strandat 4370.774 kb on - strand, within AO353_19880at 4370.774 kb on - strand, within AO353_19880at 4370.903 kb on + strandat 4370.933 kb on + strandat 4370.969 kb on + strandat 4370.969 kb on + strandat 4371.025 kb on - strand, within AO353_19885at 4371.066 kb on - strand, within AO353_19885at 4371.066 kb on - strand, within AO353_19885at 4371.090 kb on + strand, within AO353_19885at 4371.112 kb on - strand, within AO353_19885at 4371.131 kb on + strand, within AO353_19885at 4371.132 kb on - strand, within AO353_19885at 4371.132 kb on - strand, within AO353_19885at 4371.132 kb on - strand, within AO353_19885at 4371.132 kb on - strand, within AO353_19885at 4371.203 kb on + strand, within AO353_19885at 4371.204 kb on - strand, within AO353_19885at 4371.204 kb on - strand, within AO353_19885at 4371.204 kb on - strand, within AO353_19885at 4371.206 kb on + strand, within AO353_19885at 4371.206 kb on + strand, within AO353_19885at 4371.206 kb on + strand, within AO353_19885at 4371.336 kb on - strand, within AO353_19885at 4371.347 kb on - strand, within AO353_19885at 4371.471 kb on + strandat 4371.471 kb on + strandat 4371.471 kb on + strandat 4371.472 kb on - strandat 4371.472 kb on - strandat 4371.532 kb on + strandat 4371.532 kb on + strandat 4371.532 kb on + strandat 4371.533 kb on - strandat 4371.533 kb on - strandat 4371.533 kb on - strandat 4371.533 kb on - strandat 4371.533 kb on - strandat 4371.533 kb on - strandat 4371.533 kb on - strandat 4371.533 kb on - strandat 4371.533 kb on - strandat 4371.533 kb on - strandat 4371.592 kb on + strand, within AO353_19890at 4371.592 kb on + strand, within AO353_19890at 4371.593 kb on - strand, within AO353_19890at 4371.632 kb on - strand, within AO353_19890at 4371.863 kb on + strand, within AO353_19890at 4371.863 kb on + strand, within AO353_19890at 4371.863 kb on + strand, within AO353_19890at 4371.863 kb on + strand, within AO353_19890at 4371.863 kb on + strand, within AO353_19890at 4371.863 kb on + strand, within AO353_19890at 4371.864 kb on - strand, within AO353_19890at 4371.864 kb on - strand, within AO353_19890at 4371.864 kb on - strand, within AO353_19890at 4371.865 kb on + strand, within AO353_19890at 4371.964 kb on + strand, within AO353_19890at 4371.965 kb on - strand, within AO353_19890at 4371.994 kb on - strand, within AO353_19890at 4372.157 kb on + strand, within AO353_19890at 4372.157 kb on + strand, within AO353_19890at 4372.157 kb on + strand, within AO353_19890at 4372.158 kb on - strand, within AO353_19890at 4372.652 kb on + strand, within AO353_19890at 4372.672 kb on + strand, within AO353_19890at 4372.672 kb on + strand, within AO353_19890at 4372.672 kb on + strand, within AO353_19890at 4372.673 kb on - strand, within AO353_19890at 4372.673 kb on - strand, within AO353_19890at 4372.673 kb on - strand, within AO353_19890at 4372.673 kb on - strand, within AO353_19890at 4372.673 kb on - strand, within AO353_19890at 4372.673 kb on - strand, within AO353_19890at 4372.673 kb on - strand, within AO353_19890at 4373.104 kb on + strandat 4373.105 kb on - strandat 4373.105 kb on - strandat 4373.105 kb on - strandat 4373.105 kb on - strandat 4373.183 kb on - strandat 4373.304 kb on + strandat 4373.305 kb on - strandat 4373.500 kb on + strand, within AO353_19895at 4373.500 kb on + strand, within AO353_19895at 4373.501 kb on - strand, within AO353_19895at 4373.501 kb on - strand, within AO353_19895at 4373.501 kb on - strand, within AO353_19895at 4373.514 kb on + strand, within AO353_19895at 4373.515 kb on - strand, within AO353_19895at 4373.594 kb on + strand, within AO353_19895at 4373.669 kb on + strand, within AO353_19895at 4373.669 kb on + strand, within AO353_19895at 4373.713 kb on + strand, within AO353_19895at 4373.714 kb on - strand, within AO353_19895at 4373.714 kb on - strand, within AO353_19895at 4373.714 kb on - strand, within AO353_19895at 4373.714 kb on - strand, within AO353_19895at 4373.714 kb on - strand, within AO353_19895at 4373.714 kb on - strandat 4373.714 kb on - strand, within AO353_19895at 4373.714 kb on - strand, within AO353_19895at 4373.735 kb on - strand, within AO353_19895at 4373.827 kb on + strand, within AO353_19895at 4373.827 kb on + strand, within AO353_19895at 4373.827 kb on + strand, within AO353_19895at 4373.828 kb on - strand, within AO353_19895at 4373.828 kb on - strand, within AO353_19895at 4373.848 kb on + strand, within AO353_19895at 4373.849 kb on - strand, within AO353_19895at 4373.897 kb on + strand, within AO353_19895at 4373.897 kb on + strand, within AO353_19895at 4373.897 kb on + strand, within AO353_19895at 4373.897 kb on + strand, within AO353_19895at 4373.897 kb on + strand, within AO353_19895at 4373.897 kb on + strand, within AO353_19895at 4373.898 kb on - strand, within AO353_19895at 4373.898 kb on - strand, within AO353_19895at 4373.898 kb on - strand, within AO353_19895at 4373.898 kb on - strand, within AO353_19895at 4373.898 kb on - strand, within AO353_19895at 4374.086 kb on + strandat 4374.094 kb on + strandat 4374.115 kb on + strandat 4374.184 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
remove
4,370,444 + AO353_19880 0.44 +0.2
4,370,445 - AO353_19880 0.44 -0.3
4,370,474 + AO353_19880 0.48 +0.3
4,370,475 - AO353_19880 0.48 -0.5
4,370,632 + AO353_19880 0.66 -0.4
4,370,632 + AO353_19880 0.66 +0.3
4,370,632 + AO353_19880 0.66 -0.7
4,370,633 - AO353_19880 0.66 -0.2
4,370,633 - AO353_19880 0.66 +0.3
4,370,645 + AO353_19880 0.67 -0.4
4,370,646 - AO353_19880 0.67 +0.1
4,370,773 + AO353_19880 0.82 -0.2
4,370,773 + AO353_19880 0.82 -0.1
4,370,773 + +1.4
4,370,774 - AO353_19880 0.82 -0.7
4,370,774 - AO353_19880 0.82 +0.3
4,370,903 + +0.3
4,370,933 + +2.0
4,370,969 + +0.4
4,370,969 + +0.3
4,371,025 - AO353_19885 0.13 -0.2
4,371,066 - AO353_19885 0.23 +1.5
4,371,066 - AO353_19885 0.23 +0.1
4,371,090 + AO353_19885 0.29 -0.3
4,371,112 - AO353_19885 0.34 +0.9
4,371,131 + AO353_19885 0.38 -0.2
4,371,132 - AO353_19885 0.38 +0.2
4,371,132 - AO353_19885 0.38 -0.7
4,371,132 - AO353_19885 0.38 -0.4
4,371,132 - AO353_19885 0.38 -0.4
4,371,203 + AO353_19885 0.55 +0.3
4,371,204 - AO353_19885 0.55 +0.9
4,371,204 - AO353_19885 0.55 +1.8
4,371,204 - AO353_19885 0.55 -0.4
4,371,206 + AO353_19885 0.56 -0.2
4,371,206 + AO353_19885 0.56 -0.9
4,371,206 + AO353_19885 0.56 +0.2
4,371,336 - AO353_19885 0.86 -0.4
4,371,347 - AO353_19885 0.89 -0.5
4,371,471 + -1.6
4,371,471 + -0.2
4,371,471 + -1.8
4,371,472 - +0.2
4,371,472 - -0.3
4,371,532 + -0.0
4,371,532 + -0.7
4,371,532 + +0.9
4,371,533 - -0.3
4,371,533 - -0.1
4,371,533 - +0.5
4,371,533 - -0.9
4,371,533 - +0.3
4,371,533 - -1.3
4,371,533 - +0.3
4,371,533 - +0.8
4,371,533 - +0.2
4,371,533 - +1.0
4,371,592 + AO353_19890 0.11 +1.3
4,371,592 + AO353_19890 0.11 +0.2
4,371,593 - AO353_19890 0.11 -0.7
4,371,632 - AO353_19890 0.13 +0.3
4,371,863 + AO353_19890 0.26 -0.0
4,371,863 + AO353_19890 0.26 +0.0
4,371,863 + AO353_19890 0.26 +1.8
4,371,863 + AO353_19890 0.26 -0.6
4,371,863 + AO353_19890 0.26 -0.1
4,371,863 + AO353_19890 0.26 +0.6
4,371,864 - AO353_19890 0.26 -0.2
4,371,864 - AO353_19890 0.26 -0.2
4,371,864 - AO353_19890 0.26 -0.1
4,371,865 + AO353_19890 0.26 +0.6
4,371,964 + AO353_19890 0.31 +1.8
4,371,965 - AO353_19890 0.32 -2.2
4,371,994 - AO353_19890 0.33 +1.8
4,372,157 + AO353_19890 0.42 +0.8
4,372,157 + AO353_19890 0.42 +0.1
4,372,157 + AO353_19890 0.42 -0.5
4,372,158 - AO353_19890 0.42 -0.9
4,372,652 + AO353_19890 0.69 +0.1
4,372,672 + AO353_19890 0.70 -1.0
4,372,672 + AO353_19890 0.70 +1.5
4,372,672 + AO353_19890 0.70 +0.2
4,372,673 - AO353_19890 0.70 -0.5
4,372,673 - AO353_19890 0.70 -0.1
4,372,673 - AO353_19890 0.70 +0.7
4,372,673 - AO353_19890 0.70 +1.2
4,372,673 - AO353_19890 0.70 -0.2
4,372,673 - AO353_19890 0.70 +1.2
4,372,673 - AO353_19890 0.70 -0.5
4,373,104 + +0.1
4,373,105 - +0.6
4,373,105 - +0.1
4,373,105 - -0.4
4,373,105 - -0.4
4,373,183 - +0.8
4,373,304 + +0.5
4,373,305 - +0.5
4,373,500 + AO353_19895 0.19 +0.2
4,373,500 + AO353_19895 0.19 -0.3
4,373,501 - AO353_19895 0.19 -0.9
4,373,501 - AO353_19895 0.19 +0.4
4,373,501 - AO353_19895 0.19 -0.0
4,373,514 + AO353_19895 0.21 +0.4
4,373,515 - AO353_19895 0.21 -0.4
4,373,594 + AO353_19895 0.33 +0.4
4,373,669 + AO353_19895 0.45 -0.1
4,373,669 + AO353_19895 0.45 +0.5
4,373,713 + AO353_19895 0.52 -0.3
4,373,714 - AO353_19895 0.52 -0.2
4,373,714 - AO353_19895 0.52 -2.9
4,373,714 - AO353_19895 0.52 -0.5
4,373,714 - AO353_19895 0.52 -0.6
4,373,714 - AO353_19895 0.52 -0.8
4,373,714 - -0.2
4,373,714 - AO353_19895 0.52 -0.9
4,373,714 - AO353_19895 0.52 +0.6
4,373,735 - AO353_19895 0.55 -0.1
4,373,827 + AO353_19895 0.69 +0.5
4,373,827 + AO353_19895 0.69 +0.1
4,373,827 + AO353_19895 0.69 -0.2
4,373,828 - AO353_19895 0.70 -0.0
4,373,828 - AO353_19895 0.70 -1.2
4,373,848 + AO353_19895 0.73 -0.3
4,373,849 - AO353_19895 0.73 +0.0
4,373,897 + AO353_19895 0.80 +1.0
4,373,897 + AO353_19895 0.80 +0.2
4,373,897 + AO353_19895 0.80 +0.3
4,373,897 + AO353_19895 0.80 +0.4
4,373,897 + AO353_19895 0.80 -0.2
4,373,897 + AO353_19895 0.80 +0.8
4,373,898 - AO353_19895 0.80 +0.1
4,373,898 - AO353_19895 0.80 -0.3
4,373,898 - AO353_19895 0.80 -0.9
4,373,898 - AO353_19895 0.80 -0.4
4,373,898 - AO353_19895 0.80 -1.2
4,374,086 + +0.5
4,374,094 + -0.6
4,374,115 + -0.2
4,374,184 + -0.9

Or see this region's nucleotide sequence