Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_10130

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_10120 and AO353_10125 are separated by 86 nucleotidesAO353_10125 and AO353_10130 overlap by 4 nucleotidesAO353_10130 and AO353_10135 overlap by 1 nucleotidesAO353_10135 and AO353_10140 are separated by 11 nucleotides AO353_10120: AO353_10120 - N-acetylmuramoyl-L-alanine amidase, at 2,214,984 to 2,216,195 _10120 AO353_10125: AO353_10125 - GTP cyclohydrolase, at 2,216,282 to 2,217,178 _10125 AO353_10130: AO353_10130 - manganese ABC transporter ATP-binding protein, at 2,217,175 to 2,217,843 _10130 AO353_10135: AO353_10135 - zinc ABC transporter permease, at 2,217,843 to 2,218,709 _10135 AO353_10140: AO353_10140 - metal ABC transporter substrate-binding protein, at 2,218,721 to 2,219,605 _10140 Position (kb) 2217 2218Strain fitness (log2 ratio) -2 -1 0 1 2at 2216.195 kb on + strandat 2216.195 kb on + strandat 2216.196 kb on - strandat 2216.221 kb on + strandat 2216.222 kb on - strandat 2216.222 kb on - strandat 2216.222 kb on - strandat 2216.259 kb on + strandat 2216.379 kb on + strand, within AO353_10125at 2216.379 kb on + strand, within AO353_10125at 2216.379 kb on + strand, within AO353_10125at 2216.379 kb on + strand, within AO353_10125at 2216.379 kb on + strand, within AO353_10125at 2216.380 kb on - strand, within AO353_10125at 2216.380 kb on - strand, within AO353_10125at 2216.380 kb on - strand, within AO353_10125at 2216.397 kb on + strand, within AO353_10125at 2216.455 kb on + strand, within AO353_10125at 2216.455 kb on + strand, within AO353_10125at 2216.455 kb on + strand, within AO353_10125at 2216.455 kb on + strand, within AO353_10125at 2216.455 kb on + strand, within AO353_10125at 2216.455 kb on + strand, within AO353_10125at 2216.456 kb on - strand, within AO353_10125at 2216.456 kb on - strand, within AO353_10125at 2216.456 kb on - strand, within AO353_10125at 2216.456 kb on - strand, within AO353_10125at 2216.456 kb on - strand, within AO353_10125at 2216.456 kb on - strand, within AO353_10125at 2216.456 kb on - strand, within AO353_10125at 2216.456 kb on - strand, within AO353_10125at 2216.456 kb on - strand, within AO353_10125at 2216.468 kb on + strand, within AO353_10125at 2216.468 kb on + strand, within AO353_10125at 2216.468 kb on + strand, within AO353_10125at 2216.468 kb on + strand, within AO353_10125at 2216.468 kb on + strand, within AO353_10125at 2216.469 kb on - strand, within AO353_10125at 2216.469 kb on - strand, within AO353_10125at 2216.469 kb on - strand, within AO353_10125at 2216.469 kb on - strand, within AO353_10125at 2216.573 kb on + strand, within AO353_10125at 2216.573 kb on + strand, within AO353_10125at 2216.573 kb on + strand, within AO353_10125at 2216.574 kb on - strand, within AO353_10125at 2216.574 kb on - strand, within AO353_10125at 2216.574 kb on - strand, within AO353_10125at 2216.574 kb on - strand, within AO353_10125at 2216.595 kb on + strand, within AO353_10125at 2216.595 kb on + strand, within AO353_10125at 2216.595 kb on + strand, within AO353_10125at 2216.595 kb on + strand, within AO353_10125at 2216.596 kb on - strand, within AO353_10125at 2216.596 kb on - strandat 2216.596 kb on - strand, within AO353_10125at 2216.596 kb on - strand, within AO353_10125at 2216.596 kb on - strand, within AO353_10125at 2216.596 kb on - strand, within AO353_10125at 2216.714 kb on + strand, within AO353_10125at 2216.714 kb on + strand, within AO353_10125at 2216.714 kb on + strand, within AO353_10125at 2216.715 kb on - strand, within AO353_10125at 2216.715 kb on - strand, within AO353_10125at 2216.715 kb on - strand, within AO353_10125at 2216.715 kb on - strand, within AO353_10125at 2216.715 kb on - strand, within AO353_10125at 2216.715 kb on - strand, within AO353_10125at 2216.758 kb on + strand, within AO353_10125at 2216.758 kb on + strand, within AO353_10125at 2216.758 kb on + strand, within AO353_10125at 2216.758 kb on + strand, within AO353_10125at 2216.758 kb on + strand, within AO353_10125at 2216.758 kb on + strand, within AO353_10125at 2216.759 kb on - strand, within AO353_10125at 2216.759 kb on - strand, within AO353_10125at 2216.759 kb on - strand, within AO353_10125at 2216.759 kb on - strand, within AO353_10125at 2216.759 kb on - strand, within AO353_10125at 2216.759 kb on - strand, within AO353_10125at 2216.759 kb on - strand, within AO353_10125at 2216.759 kb on - strand, within AO353_10125at 2216.759 kb on - strand, within AO353_10125at 2216.903 kb on + strand, within AO353_10125at 2216.903 kb on + strand, within AO353_10125at 2216.903 kb on + strand, within AO353_10125at 2216.903 kb on + strand, within AO353_10125at 2216.903 kb on + strand, within AO353_10125at 2216.903 kb on + strand, within AO353_10125at 2216.903 kb on + strand, within AO353_10125at 2216.904 kb on - strand, within AO353_10125at 2216.904 kb on - strand, within AO353_10125at 2216.904 kb on - strand, within AO353_10125at 2216.904 kb on - strand, within AO353_10125at 2216.904 kb on - strand, within AO353_10125at 2216.904 kb on - strand, within AO353_10125at 2216.979 kb on + strand, within AO353_10125at 2216.979 kb on + strand, within AO353_10125at 2216.980 kb on - strand, within AO353_10125at 2217.245 kb on + strand, within AO353_10130at 2217.828 kb on + strandat 2217.828 kb on + strandat 2217.828 kb on + strandat 2217.828 kb on + strandat 2217.828 kb on + strandat 2217.828 kb on + strandat 2217.828 kb on + strandat 2217.828 kb on + strandat 2217.828 kb on + strandat 2217.828 kb on + strandat 2217.828 kb on + strandat 2217.828 kb on + strandat 2217.828 kb on + strandat 2217.828 kb on + strandat 2217.828 kb on + strandat 2217.828 kb on + strandat 2217.828 kb on + strandat 2217.828 kb on + strandat 2217.828 kb on + strandat 2217.829 kb on - strandat 2217.829 kb on - strandat 2217.829 kb on - strandat 2217.829 kb on - strandat 2217.829 kb on - strandat 2217.829 kb on - strandat 2217.829 kb on - strandat 2217.829 kb on - strandat 2217.829 kb on - strandat 2217.829 kb on - strandat 2217.829 kb on - strandat 2217.829 kb on - strandat 2217.841 kb on + strandat 2217.841 kb on + strandat 2217.841 kb on + strandat 2217.841 kb on + strandat 2217.904 kb on + strandat 2217.904 kb on + strandat 2217.919 kb on + strandat 2218.158 kb on + strand, within AO353_10135at 2218.159 kb on - strand, within AO353_10135at 2218.159 kb on - strand, within AO353_10135at 2218.320 kb on + strand, within AO353_10135at 2218.321 kb on - strand, within AO353_10135at 2218.321 kb on - strand, within AO353_10135at 2218.587 kb on + strand, within AO353_10135at 2218.587 kb on + strand, within AO353_10135at 2218.587 kb on + strand, within AO353_10135at 2218.587 kb on + strand, within AO353_10135at 2218.588 kb on - strand, within AO353_10135at 2218.588 kb on - strand, within AO353_10135at 2218.588 kb on - strand, within AO353_10135at 2218.588 kb on - strand, within AO353_10135at 2218.590 kb on + strand, within AO353_10135at 2218.590 kb on + strand, within AO353_10135at 2218.590 kb on + strand, within AO353_10135at 2218.590 kb on + strand, within AO353_10135at 2218.590 kb on + strand, within AO353_10135at 2218.591 kb on - strand, within AO353_10135at 2218.591 kb on - strand, within AO353_10135at 2218.591 kb on - strand, within AO353_10135at 2218.591 kb on - strand, within AO353_10135at 2218.591 kb on - strand, within AO353_10135at 2218.625 kb on - strandat 2218.638 kb on + strandat 2218.638 kb on + strandat 2218.638 kb on + strandat 2218.638 kb on + strandat 2218.639 kb on - strandat 2218.639 kb on - strandat 2218.639 kb on - strandat 2218.639 kb on - strandat 2218.639 kb on - strandat 2218.639 kb on - strandat 2218.639 kb on - strandat 2218.731 kb on + strandat 2218.731 kb on + strandat 2218.731 kb on + strandat 2218.731 kb on + strandat 2218.731 kb on + strandat 2218.732 kb on - strandat 2218.732 kb on - strandat 2218.732 kb on - strandat 2218.732 kb on - strandat 2218.732 kb on - strandat 2218.732 kb on - strandat 2218.732 kb on - strandat 2218.732 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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2,216,195 + -0.7
2,216,195 + -1.0
2,216,196 - +1.6
2,216,221 + -0.3
2,216,222 - -0.5
2,216,222 - +0.4
2,216,222 - -0.2
2,216,259 + -0.6
2,216,379 + AO353_10125 0.11 -1.3
2,216,379 + AO353_10125 0.11 +0.2
2,216,379 + AO353_10125 0.11 +0.8
2,216,379 + AO353_10125 0.11 +0.3
2,216,379 + AO353_10125 0.11 +0.5
2,216,380 - AO353_10125 0.11 -0.6
2,216,380 - AO353_10125 0.11 +0.0
2,216,380 - AO353_10125 0.11 +0.3
2,216,397 + AO353_10125 0.13 +0.1
2,216,455 + AO353_10125 0.19 -0.0
2,216,455 + AO353_10125 0.19 -0.8
2,216,455 + AO353_10125 0.19 +0.0
2,216,455 + AO353_10125 0.19 +0.3
2,216,455 + AO353_10125 0.19 +1.4
2,216,455 + AO353_10125 0.19 +0.3
2,216,456 - AO353_10125 0.19 +1.0
2,216,456 - AO353_10125 0.19 -0.1
2,216,456 - AO353_10125 0.19 -0.3
2,216,456 - AO353_10125 0.19 -1.1
2,216,456 - AO353_10125 0.19 +0.2
2,216,456 - AO353_10125 0.19 +0.9
2,216,456 - AO353_10125 0.19 -1.8
2,216,456 - AO353_10125 0.19 -0.6
2,216,456 - AO353_10125 0.19 -0.4
2,216,468 + AO353_10125 0.21 +0.7
2,216,468 + AO353_10125 0.21 -0.2
2,216,468 + AO353_10125 0.21 -0.6
2,216,468 + AO353_10125 0.21 -0.6
2,216,468 + AO353_10125 0.21 +0.9
2,216,469 - AO353_10125 0.21 -0.5
2,216,469 - AO353_10125 0.21 +0.5
2,216,469 - AO353_10125 0.21 -1.7
2,216,469 - AO353_10125 0.21 +0.4
2,216,573 + AO353_10125 0.32 +0.9
2,216,573 + AO353_10125 0.32 -0.0
2,216,573 + AO353_10125 0.32 -1.5
2,216,574 - AO353_10125 0.33 +0.2
2,216,574 - AO353_10125 0.33 -0.6
2,216,574 - AO353_10125 0.33 +1.0
2,216,574 - AO353_10125 0.33 -0.4
2,216,595 + AO353_10125 0.35 +1.1
2,216,595 + AO353_10125 0.35 -0.2
2,216,595 + AO353_10125 0.35 +0.3
2,216,595 + AO353_10125 0.35 -2.3
2,216,596 - AO353_10125 0.35 +1.3
2,216,596 - +1.3
2,216,596 - AO353_10125 0.35 -1.1
2,216,596 - AO353_10125 0.35 -0.5
2,216,596 - AO353_10125 0.35 -0.1
2,216,596 - AO353_10125 0.35 -0.8
2,216,714 + AO353_10125 0.48 -0.9
2,216,714 + AO353_10125 0.48 +0.5
2,216,714 + AO353_10125 0.48 -1.5
2,216,715 - AO353_10125 0.48 -1.3
2,216,715 - AO353_10125 0.48 +0.0
2,216,715 - AO353_10125 0.48 -0.3
2,216,715 - AO353_10125 0.48 +0.6
2,216,715 - AO353_10125 0.48 -0.2
2,216,715 - AO353_10125 0.48 -0.3
2,216,758 + AO353_10125 0.53 +0.8
2,216,758 + AO353_10125 0.53 -0.5
2,216,758 + AO353_10125 0.53 -0.7
2,216,758 + AO353_10125 0.53 -0.2
2,216,758 + AO353_10125 0.53 -0.3
2,216,758 + AO353_10125 0.53 +0.2
2,216,759 - AO353_10125 0.53 +0.3
2,216,759 - AO353_10125 0.53 -0.3
2,216,759 - AO353_10125 0.53 +0.0
2,216,759 - AO353_10125 0.53 -0.2
2,216,759 - AO353_10125 0.53 -0.1
2,216,759 - AO353_10125 0.53 +0.5
2,216,759 - AO353_10125 0.53 +0.1
2,216,759 - AO353_10125 0.53 +0.2
2,216,759 - AO353_10125 0.53 +1.5
2,216,903 + AO353_10125 0.69 +0.7
2,216,903 + AO353_10125 0.69 -0.2
2,216,903 + AO353_10125 0.69 +1.2
2,216,903 + AO353_10125 0.69 +1.8
2,216,903 + AO353_10125 0.69 -0.6
2,216,903 + AO353_10125 0.69 -0.0
2,216,903 + AO353_10125 0.69 +0.8
2,216,904 - AO353_10125 0.69 -0.5
2,216,904 - AO353_10125 0.69 +1.3
2,216,904 - AO353_10125 0.69 -0.5
2,216,904 - AO353_10125 0.69 +0.3
2,216,904 - AO353_10125 0.69 +0.3
2,216,904 - AO353_10125 0.69 +0.5
2,216,979 + AO353_10125 0.78 -0.5
2,216,979 + AO353_10125 0.78 +1.0
2,216,980 - AO353_10125 0.78 -0.5
2,217,245 + AO353_10130 0.10 -0.2
2,217,828 + -1.6
2,217,828 + -1.0
2,217,828 + +0.1
2,217,828 + +0.3
2,217,828 + -1.4
2,217,828 + -0.4
2,217,828 + -0.3
2,217,828 + +0.2
2,217,828 + +0.1
2,217,828 + -1.3
2,217,828 + +0.0
2,217,828 + -1.6
2,217,828 + +0.6
2,217,828 + -0.3
2,217,828 + +0.5
2,217,828 + +0.4
2,217,828 + -2.1
2,217,828 + +1.1
2,217,828 + +0.4
2,217,829 - -0.7
2,217,829 - -1.8
2,217,829 - +0.0
2,217,829 - -0.3
2,217,829 - -0.1
2,217,829 - -0.7
2,217,829 - +0.7
2,217,829 - +0.3
2,217,829 - -0.4
2,217,829 - +0.2
2,217,829 - +0.7
2,217,829 - -0.5
2,217,841 + -1.1
2,217,841 + -1.3
2,217,841 + -0.0
2,217,841 + +0.4
2,217,904 + -0.3
2,217,904 + -1.2
2,217,919 + +0.5
2,218,158 + AO353_10135 0.36 +0.3
2,218,159 - AO353_10135 0.36 +1.4
2,218,159 - AO353_10135 0.36 +0.4
2,218,320 + AO353_10135 0.55 +0.3
2,218,321 - AO353_10135 0.55 -0.7
2,218,321 - AO353_10135 0.55 +1.3
2,218,587 + AO353_10135 0.86 -1.6
2,218,587 + AO353_10135 0.86 +0.1
2,218,587 + AO353_10135 0.86 -0.3
2,218,587 + AO353_10135 0.86 -1.2
2,218,588 - AO353_10135 0.86 -0.9
2,218,588 - AO353_10135 0.86 -1.4
2,218,588 - AO353_10135 0.86 +1.0
2,218,588 - AO353_10135 0.86 +0.1
2,218,590 + AO353_10135 0.86 +0.2
2,218,590 + AO353_10135 0.86 +0.2
2,218,590 + AO353_10135 0.86 -0.9
2,218,590 + AO353_10135 0.86 +0.4
2,218,590 + AO353_10135 0.86 -0.1
2,218,591 - AO353_10135 0.86 -1.2
2,218,591 - AO353_10135 0.86 -0.7
2,218,591 - AO353_10135 0.86 -0.5
2,218,591 - AO353_10135 0.86 +0.2
2,218,591 - AO353_10135 0.86 -0.8
2,218,625 - +0.3
2,218,638 + +0.0
2,218,638 + +1.6
2,218,638 + +0.4
2,218,638 + -0.3
2,218,639 - -0.9
2,218,639 - -0.7
2,218,639 - -0.3
2,218,639 - -0.5
2,218,639 - +0.2
2,218,639 - -0.8
2,218,639 - +0.6
2,218,731 + +0.1
2,218,731 + +0.7
2,218,731 + +0.4
2,218,731 + -1.9
2,218,731 + -0.6
2,218,732 - +1.0
2,218,732 - +1.4
2,218,732 - +0.5
2,218,732 - -1.8
2,218,732 - -0.7
2,218,732 - +0.1
2,218,732 - -0.4
2,218,732 - +0.2

Or see this region's nucleotide sequence