Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_05705

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_05700 and AO353_05705 are separated by 150 nucleotidesAO353_05705 and AO353_05710 overlap by 4 nucleotides AO353_05700: AO353_05700 - L-lactate permease, at 1,258,429 to 1,260,117 _05700 AO353_05705: AO353_05705 - oxidoreductase, at 1,260,268 to 1,261,092 _05705 AO353_05710: AO353_05710 - (Fe-S)-binding protein, at 1,261,089 to 1,262,543 _05710 Position (kb) 1260 1261 1262Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1259.452 kb on + strand, within AO353_05700at 1259.452 kb on + strand, within AO353_05700at 1259.452 kb on + strand, within AO353_05700at 1259.452 kb on + strand, within AO353_05700at 1259.452 kb on + strand, within AO353_05700at 1259.452 kb on + strand, within AO353_05700at 1259.452 kb on + strand, within AO353_05700at 1259.452 kb on + strand, within AO353_05700at 1259.453 kb on - strand, within AO353_05700at 1259.453 kb on - strand, within AO353_05700at 1259.453 kb on - strand, within AO353_05700at 1259.453 kb on - strand, within AO353_05700at 1259.453 kb on - strand, within AO353_05700at 1259.453 kb on - strand, within AO353_05700at 1259.453 kb on - strand, within AO353_05700at 1259.453 kb on - strand, within AO353_05700at 1259.453 kb on - strand, within AO353_05700at 1259.453 kb on - strand, within AO353_05700at 1259.519 kb on + strand, within AO353_05700at 1259.643 kb on + strand, within AO353_05700at 1259.682 kb on + strand, within AO353_05700at 1259.682 kb on + strand, within AO353_05700at 1259.728 kb on + strand, within AO353_05700at 1259.728 kb on + strand, within AO353_05700at 1259.729 kb on - strand, within AO353_05700at 1259.729 kb on - strand, within AO353_05700at 1259.729 kb on - strandat 1259.729 kb on - strand, within AO353_05700at 1259.729 kb on - strand, within AO353_05700at 1259.729 kb on - strand, within AO353_05700at 1259.729 kb on - strand, within AO353_05700at 1259.759 kb on + strand, within AO353_05700at 1259.759 kb on + strand, within AO353_05700at 1259.759 kb on + strand, within AO353_05700at 1259.760 kb on - strand, within AO353_05700at 1260.044 kb on + strandat 1260.044 kb on + strandat 1260.045 kb on - strandat 1260.045 kb on - strandat 1260.045 kb on - strandat 1260.045 kb on - strandat 1260.045 kb on - strandat 1260.045 kb on - strandat 1260.088 kb on + strandat 1260.089 kb on - strandat 1260.089 kb on - strandat 1260.115 kb on + strandat 1260.115 kb on + strandat 1260.115 kb on + strandat 1260.115 kb on + strandat 1260.116 kb on - strandat 1260.116 kb on - strandat 1260.116 kb on - strandat 1260.116 kb on - strandat 1260.116 kb on - strandat 1260.116 kb on - strandat 1260.121 kb on + strandat 1260.121 kb on + strandat 1260.121 kb on + strandat 1260.121 kb on + strandat 1260.122 kb on - strandat 1260.122 kb on - strandat 1260.155 kb on + strandat 1260.156 kb on - strandat 1260.214 kb on + strandat 1260.214 kb on + strandat 1260.215 kb on - strandat 1260.215 kb on - strandat 1260.215 kb on - strandat 1260.216 kb on + strandat 1260.216 kb on + strandat 1260.216 kb on + strandat 1260.216 kb on + strandat 1260.216 kb on + strandat 1260.216 kb on + strandat 1260.216 kb on + strandat 1260.216 kb on + strandat 1260.216 kb on + strandat 1260.216 kb on + strandat 1260.217 kb on - strandat 1260.217 kb on - strandat 1260.217 kb on - strandat 1260.217 kb on - strandat 1260.283 kb on + strandat 1260.283 kb on + strandat 1260.284 kb on - strandat 1260.341 kb on - strandat 1260.367 kb on + strand, within AO353_05705at 1260.367 kb on + strand, within AO353_05705at 1260.367 kb on + strand, within AO353_05705at 1260.367 kb on + strand, within AO353_05705at 1260.367 kb on + strand, within AO353_05705at 1260.367 kb on + strand, within AO353_05705at 1260.461 kb on - strand, within AO353_05705at 1260.496 kb on + strand, within AO353_05705at 1260.496 kb on + strand, within AO353_05705at 1260.496 kb on + strand, within AO353_05705at 1260.497 kb on - strand, within AO353_05705at 1260.497 kb on - strand, within AO353_05705at 1260.497 kb on - strand, within AO353_05705at 1260.497 kb on - strand, within AO353_05705at 1260.509 kb on - strand, within AO353_05705at 1260.616 kb on + strand, within AO353_05705at 1260.616 kb on + strand, within AO353_05705at 1260.616 kb on + strand, within AO353_05705at 1260.682 kb on + strand, within AO353_05705at 1260.682 kb on + strand, within AO353_05705at 1260.682 kb on + strand, within AO353_05705at 1260.682 kb on + strand, within AO353_05705at 1260.682 kb on + strand, within AO353_05705at 1260.682 kb on + strand, within AO353_05705at 1260.682 kb on + strand, within AO353_05705at 1260.682 kb on + strand, within AO353_05705at 1260.682 kb on + strand, within AO353_05705at 1260.683 kb on - strand, within AO353_05705at 1260.683 kb on - strand, within AO353_05705at 1260.683 kb on - strand, within AO353_05705at 1260.683 kb on - strand, within AO353_05705at 1261.258 kb on + strand, within AO353_05710at 1261.258 kb on + strand, within AO353_05710at 1261.258 kb on + strand, within AO353_05710at 1261.258 kb on + strand, within AO353_05710at 1261.258 kb on + strand, within AO353_05710at 1261.258 kb on + strand, within AO353_05710at 1261.258 kb on + strand, within AO353_05710at 1261.258 kb on + strand, within AO353_05710at 1261.259 kb on - strand, within AO353_05710at 1261.259 kb on - strand, within AO353_05710at 1261.259 kb on - strand, within AO353_05710at 1261.259 kb on - strand, within AO353_05710at 1261.259 kb on - strand, within AO353_05710at 1261.259 kb on - strand, within AO353_05710at 1261.259 kb on - strand, within AO353_05710at 1261.277 kb on + strand, within AO353_05710at 1261.277 kb on + strand, within AO353_05710at 1261.277 kb on + strand, within AO353_05710at 1261.277 kb on + strand, within AO353_05710at 1261.277 kb on + strand, within AO353_05710at 1261.277 kb on + strand, within AO353_05710at 1261.277 kb on + strand, within AO353_05710at 1261.277 kb on + strand, within AO353_05710at 1261.277 kb on + strand, within AO353_05710at 1261.278 kb on - strand, within AO353_05710at 1261.565 kb on + strand, within AO353_05710at 1261.565 kb on + strand, within AO353_05710at 1261.565 kb on + strand, within AO353_05710at 1261.565 kb on + strand, within AO353_05710at 1261.565 kb on + strand, within AO353_05710at 1261.565 kb on + strand, within AO353_05710at 1261.565 kb on + strand, within AO353_05710at 1261.565 kb on + strand, within AO353_05710at 1261.565 kb on + strand, within AO353_05710at 1261.565 kb on + strand, within AO353_05710at 1261.565 kb on + strand, within AO353_05710at 1261.565 kb on + strand, within AO353_05710at 1261.565 kb on + strand, within AO353_05710at 1261.566 kb on - strand, within AO353_05710at 1261.566 kb on - strand, within AO353_05710at 1261.566 kb on - strand, within AO353_05710at 1261.566 kb on - strand, within AO353_05710at 1261.566 kb on - strand, within AO353_05710at 1261.566 kb on - strand, within AO353_05710at 1261.566 kb on - strand, within AO353_05710at 1261.566 kb on - strand, within AO353_05710at 1261.566 kb on - strand, within AO353_05710at 1261.566 kb on - strand, within AO353_05710at 1261.566 kb on - strand, within AO353_05710at 1261.566 kb on - strand, within AO353_05710at 1261.566 kb on - strand, within AO353_05710at 1261.568 kb on + strand, within AO353_05710at 1261.568 kb on + strand, within AO353_05710at 1261.568 kb on + strand, within AO353_05710at 1261.568 kb on + strand, within AO353_05710at 1261.568 kb on + strand, within AO353_05710at 1261.568 kb on + strand, within AO353_05710at 1261.568 kb on + strand, within AO353_05710at 1261.569 kb on - strand, within AO353_05710at 1261.569 kb on - strand, within AO353_05710at 1261.569 kb on - strand, within AO353_05710at 1261.569 kb on - strand, within AO353_05710at 1261.569 kb on - strand, within AO353_05710at 1261.569 kb on - strand, within AO353_05710at 1261.569 kb on - strand, within AO353_05710at 1261.635 kb on + strand, within AO353_05710at 1261.635 kb on + strand, within AO353_05710at 1261.635 kb on + strand, within AO353_05710at 1261.635 kb on + strand, within AO353_05710at 1261.635 kb on + strand, within AO353_05710at 1261.635 kb on + strand, within AO353_05710at 1261.635 kb on + strand, within AO353_05710at 1261.635 kb on + strand, within AO353_05710at 1261.635 kb on + strand, within AO353_05710at 1261.636 kb on - strand, within AO353_05710at 1261.636 kb on - strand, within AO353_05710at 1261.636 kb on - strand, within AO353_05710at 1261.636 kb on - strand, within AO353_05710at 1261.861 kb on + strand, within AO353_05710at 1261.861 kb on + strand, within AO353_05710at 1261.862 kb on - strand, within AO353_05710at 1261.862 kb on - strand, within AO353_05710at 1261.862 kb on - strand, within AO353_05710at 1261.914 kb on + strand, within AO353_05710at 1261.914 kb on + strand, within AO353_05710at 1261.914 kb on + strand, within AO353_05710at 1261.914 kb on + strand, within AO353_05710at 1261.914 kb on + strand, within AO353_05710at 1261.914 kb on + strand, within AO353_05710at 1261.914 kb on + strand, within AO353_05710at 1261.914 kb on + strand, within AO353_05710at 1261.915 kb on - strand, within AO353_05710at 1261.915 kb on - strand, within AO353_05710at 1261.915 kb on - strand, within AO353_05710at 1261.915 kb on - strand, within AO353_05710at 1261.915 kb on - strand, within AO353_05710at 1261.915 kb on - strand, within AO353_05710at 1261.915 kb on - strand, within AO353_05710at 1261.915 kb on - strand, within AO353_05710at 1261.915 kb on - strand, within AO353_05710at 1261.915 kb on - strand, within AO353_05710at 1262.082 kb on + strand, within AO353_05710at 1262.082 kb on + strand, within AO353_05710at 1262.083 kb on - strand, within AO353_05710

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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1,259,452 + AO353_05700 0.61 -4.2
1,259,452 + AO353_05700 0.61 -0.3
1,259,452 + AO353_05700 0.61 -3.2
1,259,452 + AO353_05700 0.61 -2.6
1,259,452 + AO353_05700 0.61 -2.1
1,259,452 + AO353_05700 0.61 -3.0
1,259,452 + AO353_05700 0.61 -0.9
1,259,452 + AO353_05700 0.61 +0.7
1,259,453 - AO353_05700 0.61 -2.9
1,259,453 - AO353_05700 0.61 -3.2
1,259,453 - AO353_05700 0.61 -2.2
1,259,453 - AO353_05700 0.61 -2.3
1,259,453 - AO353_05700 0.61 -2.6
1,259,453 - AO353_05700 0.61 -1.1
1,259,453 - AO353_05700 0.61 -2.4
1,259,453 - AO353_05700 0.61 -2.0
1,259,453 - AO353_05700 0.61 -4.1
1,259,453 - AO353_05700 0.61 -2.1
1,259,519 + AO353_05700 0.65 -3.0
1,259,643 + AO353_05700 0.72 -1.1
1,259,682 + AO353_05700 0.74 -2.0
1,259,682 + AO353_05700 0.74 -1.8
1,259,728 + AO353_05700 0.77 -2.8
1,259,728 + AO353_05700 0.77 -0.1
1,259,729 - AO353_05700 0.77 -1.5
1,259,729 - AO353_05700 0.77 -2.0
1,259,729 - -0.1
1,259,729 - AO353_05700 0.77 -1.7
1,259,729 - AO353_05700 0.77 -2.2
1,259,729 - AO353_05700 0.77 -2.7
1,259,729 - AO353_05700 0.77 -0.8
1,259,759 + AO353_05700 0.79 -1.3
1,259,759 + AO353_05700 0.79 -1.5
1,259,759 + AO353_05700 0.79 -3.0
1,259,760 - AO353_05700 0.79 -1.2
1,260,044 + -1.7
1,260,044 + -2.5
1,260,045 - -2.8
1,260,045 - -0.6
1,260,045 - -2.8
1,260,045 - -4.0
1,260,045 - -2.0
1,260,045 - -2.0
1,260,088 + -1.6
1,260,089 - -0.3
1,260,089 - -1.9
1,260,115 + -1.3
1,260,115 + +0.4
1,260,115 + +1.2
1,260,115 + +0.2
1,260,116 - -1.5
1,260,116 - -2.5
1,260,116 - -1.1
1,260,116 - -2.8
1,260,116 - -1.3
1,260,116 - -2.1
1,260,121 + -0.5
1,260,121 + -1.8
1,260,121 + -0.0
1,260,121 + -0.6
1,260,122 - -0.9
1,260,122 - -1.1
1,260,155 + -1.6
1,260,156 - -2.2
1,260,214 + -1.8
1,260,214 + -2.9
1,260,215 - -0.6
1,260,215 - -2.3
1,260,215 - -3.0
1,260,216 + -0.1
1,260,216 + -2.8
1,260,216 + -3.4
1,260,216 + -2.7
1,260,216 + -2.4
1,260,216 + -4.4
1,260,216 + -3.3
1,260,216 + -1.5
1,260,216 + -2.1
1,260,216 + -2.2
1,260,217 - -1.7
1,260,217 - -1.9
1,260,217 - -1.5
1,260,217 - -2.6
1,260,283 + -2.2
1,260,283 + -0.9
1,260,284 - +0.4
1,260,341 - -1.8
1,260,367 + AO353_05705 0.12 -2.2
1,260,367 + AO353_05705 0.12 -3.3
1,260,367 + AO353_05705 0.12 -1.3
1,260,367 + AO353_05705 0.12 -2.5
1,260,367 + AO353_05705 0.12 -2.4
1,260,367 + AO353_05705 0.12 -1.8
1,260,461 - AO353_05705 0.23 -4.3
1,260,496 + AO353_05705 0.28 -2.9
1,260,496 + AO353_05705 0.28 -0.9
1,260,496 + AO353_05705 0.28 -3.0
1,260,497 - AO353_05705 0.28 -1.6
1,260,497 - AO353_05705 0.28 -3.5
1,260,497 - AO353_05705 0.28 -3.2
1,260,497 - AO353_05705 0.28 -3.6
1,260,509 - AO353_05705 0.29 -3.0
1,260,616 + AO353_05705 0.42 -2.0
1,260,616 + AO353_05705 0.42 -2.2
1,260,616 + AO353_05705 0.42 -4.6
1,260,682 + AO353_05705 0.50 -3.3
1,260,682 + AO353_05705 0.50 -2.0
1,260,682 + AO353_05705 0.50 -1.3
1,260,682 + AO353_05705 0.50 -3.3
1,260,682 + AO353_05705 0.50 -2.7
1,260,682 + AO353_05705 0.50 -2.0
1,260,682 + AO353_05705 0.50 -2.5
1,260,682 + AO353_05705 0.50 -2.3
1,260,682 + AO353_05705 0.50 -0.5
1,260,683 - AO353_05705 0.50 -0.9
1,260,683 - AO353_05705 0.50 -0.8
1,260,683 - AO353_05705 0.50 -0.8
1,260,683 - AO353_05705 0.50 -1.5
1,261,258 + AO353_05710 0.12 -3.7
1,261,258 + AO353_05710 0.12 -1.2
1,261,258 + AO353_05710 0.12 -2.4
1,261,258 + AO353_05710 0.12 -1.8
1,261,258 + AO353_05710 0.12 -2.8
1,261,258 + AO353_05710 0.12 -2.5
1,261,258 + AO353_05710 0.12 -1.1
1,261,258 + AO353_05710 0.12 -2.6
1,261,259 - AO353_05710 0.12 -2.4
1,261,259 - AO353_05710 0.12 -3.4
1,261,259 - AO353_05710 0.12 +0.2
1,261,259 - AO353_05710 0.12 -2.6
1,261,259 - AO353_05710 0.12 -4.1
1,261,259 - AO353_05710 0.12 -2.7
1,261,259 - AO353_05710 0.12 -1.3
1,261,277 + AO353_05710 0.13 -2.1
1,261,277 + AO353_05710 0.13 -0.8
1,261,277 + AO353_05710 0.13 -1.7
1,261,277 + AO353_05710 0.13 -1.3
1,261,277 + AO353_05710 0.13 -2.5
1,261,277 + AO353_05710 0.13 -2.5
1,261,277 + AO353_05710 0.13 -4.2
1,261,277 + AO353_05710 0.13 -1.1
1,261,277 + AO353_05710 0.13 -0.6
1,261,278 - AO353_05710 0.13 -0.8
1,261,565 + AO353_05710 0.33 -3.5
1,261,565 + AO353_05710 0.33 -3.9
1,261,565 + AO353_05710 0.33 -1.8
1,261,565 + AO353_05710 0.33 -1.1
1,261,565 + AO353_05710 0.33 +0.8
1,261,565 + AO353_05710 0.33 -2.7
1,261,565 + AO353_05710 0.33 -1.0
1,261,565 + AO353_05710 0.33 -1.9
1,261,565 + AO353_05710 0.33 -3.6
1,261,565 + AO353_05710 0.33 -1.8
1,261,565 + AO353_05710 0.33 -3.2
1,261,565 + AO353_05710 0.33 -3.9
1,261,565 + AO353_05710 0.33 -3.7
1,261,566 - AO353_05710 0.33 -2.1
1,261,566 - AO353_05710 0.33 -2.9
1,261,566 - AO353_05710 0.33 -1.8
1,261,566 - AO353_05710 0.33 -0.6
1,261,566 - AO353_05710 0.33 -2.9
1,261,566 - AO353_05710 0.33 -0.3
1,261,566 - AO353_05710 0.33 -1.3
1,261,566 - AO353_05710 0.33 -2.8
1,261,566 - AO353_05710 0.33 -1.8
1,261,566 - AO353_05710 0.33 -4.5
1,261,566 - AO353_05710 0.33 -1.5
1,261,566 - AO353_05710 0.33 -1.8
1,261,566 - AO353_05710 0.33 -0.6
1,261,568 + AO353_05710 0.33 -1.7
1,261,568 + AO353_05710 0.33 -0.8
1,261,568 + AO353_05710 0.33 -0.6
1,261,568 + AO353_05710 0.33 -2.8
1,261,568 + AO353_05710 0.33 -2.8
1,261,568 + AO353_05710 0.33 -0.9
1,261,568 + AO353_05710 0.33 -0.8
1,261,569 - AO353_05710 0.33 -3.4
1,261,569 - AO353_05710 0.33 -3.1
1,261,569 - AO353_05710 0.33 -0.9
1,261,569 - AO353_05710 0.33 -2.2
1,261,569 - AO353_05710 0.33 -0.7
1,261,569 - AO353_05710 0.33 -2.5
1,261,569 - AO353_05710 0.33 -3.3
1,261,635 + AO353_05710 0.38 -1.8
1,261,635 + AO353_05710 0.38 -2.5
1,261,635 + AO353_05710 0.38 -1.5
1,261,635 + AO353_05710 0.38 -2.6
1,261,635 + AO353_05710 0.38 -2.2
1,261,635 + AO353_05710 0.38 -1.1
1,261,635 + AO353_05710 0.38 -1.1
1,261,635 + AO353_05710 0.38 -2.8
1,261,635 + AO353_05710 0.38 -2.6
1,261,636 - AO353_05710 0.38 -1.1
1,261,636 - AO353_05710 0.38 -1.8
1,261,636 - AO353_05710 0.38 -3.3
1,261,636 - AO353_05710 0.38 -2.2
1,261,861 + AO353_05710 0.53 -2.4
1,261,861 + AO353_05710 0.53 -1.6
1,261,862 - AO353_05710 0.53 -1.1
1,261,862 - AO353_05710 0.53 -2.1
1,261,862 - AO353_05710 0.53 -0.6
1,261,914 + AO353_05710 0.57 -0.8
1,261,914 + AO353_05710 0.57 +0.2
1,261,914 + AO353_05710 0.57 -2.8
1,261,914 + AO353_05710 0.57 -1.2
1,261,914 + AO353_05710 0.57 -1.0
1,261,914 + AO353_05710 0.57 -0.8
1,261,914 + AO353_05710 0.57 -0.9
1,261,914 + AO353_05710 0.57 -1.8
1,261,915 - AO353_05710 0.57 +0.2
1,261,915 - AO353_05710 0.57 -0.1
1,261,915 - AO353_05710 0.57 -1.8
1,261,915 - AO353_05710 0.57 -2.4
1,261,915 - AO353_05710 0.57 -1.2
1,261,915 - AO353_05710 0.57 -0.9
1,261,915 - AO353_05710 0.57 -2.2
1,261,915 - AO353_05710 0.57 -0.9
1,261,915 - AO353_05710 0.57 -2.7
1,261,915 - AO353_05710 0.57 -1.8
1,262,082 + AO353_05710 0.68 +0.5
1,262,082 + AO353_05710 0.68 -1.2
1,262,083 - AO353_05710 0.68 -3.3

Or see this region's nucleotide sequence