Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_05700 and AO353_05705 are separated by 150 nucleotides AO353_05705 and AO353_05710 overlap by 4 nucleotides
AO353_05700: AO353_05700 - L-lactate permease, at 1,258,429 to 1,260,117
_05700
AO353_05705: AO353_05705 - oxidoreductase, at 1,260,268 to 1,261,092
_05705
AO353_05710: AO353_05710 - (Fe-S)-binding protein, at 1,261,089 to 1,262,543
_05710
Position (kb)
1260
1261
1262 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1259.452 kb on + strand, within AO353_05700 at 1259.452 kb on + strand, within AO353_05700 at 1259.452 kb on + strand, within AO353_05700 at 1259.452 kb on + strand, within AO353_05700 at 1259.452 kb on + strand, within AO353_05700 at 1259.452 kb on + strand, within AO353_05700 at 1259.452 kb on + strand, within AO353_05700 at 1259.452 kb on + strand, within AO353_05700 at 1259.453 kb on - strand, within AO353_05700 at 1259.453 kb on - strand, within AO353_05700 at 1259.453 kb on - strand, within AO353_05700 at 1259.453 kb on - strand, within AO353_05700 at 1259.453 kb on - strand, within AO353_05700 at 1259.453 kb on - strand, within AO353_05700 at 1259.453 kb on - strand, within AO353_05700 at 1259.453 kb on - strand, within AO353_05700 at 1259.453 kb on - strand, within AO353_05700 at 1259.453 kb on - strand, within AO353_05700 at 1259.519 kb on + strand, within AO353_05700 at 1259.643 kb on + strand, within AO353_05700 at 1259.682 kb on + strand, within AO353_05700 at 1259.682 kb on + strand, within AO353_05700 at 1259.728 kb on + strand, within AO353_05700 at 1259.728 kb on + strand, within AO353_05700 at 1259.729 kb on - strand, within AO353_05700 at 1259.729 kb on - strand, within AO353_05700 at 1259.729 kb on - strand at 1259.729 kb on - strand, within AO353_05700 at 1259.729 kb on - strand, within AO353_05700 at 1259.729 kb on - strand, within AO353_05700 at 1259.729 kb on - strand, within AO353_05700 at 1259.759 kb on + strand, within AO353_05700 at 1259.759 kb on + strand, within AO353_05700 at 1259.759 kb on + strand, within AO353_05700 at 1259.760 kb on - strand, within AO353_05700 at 1260.044 kb on + strand at 1260.044 kb on + strand at 1260.045 kb on - strand at 1260.045 kb on - strand at 1260.045 kb on - strand at 1260.045 kb on - strand at 1260.045 kb on - strand at 1260.045 kb on - strand at 1260.088 kb on + strand at 1260.089 kb on - strand at 1260.089 kb on - strand at 1260.115 kb on + strand at 1260.115 kb on + strand at 1260.115 kb on + strand at 1260.115 kb on + strand at 1260.116 kb on - strand at 1260.116 kb on - strand at 1260.116 kb on - strand at 1260.116 kb on - strand at 1260.116 kb on - strand at 1260.116 kb on - strand at 1260.121 kb on + strand at 1260.121 kb on + strand at 1260.121 kb on + strand at 1260.121 kb on + strand at 1260.122 kb on - strand at 1260.122 kb on - strand at 1260.155 kb on + strand at 1260.156 kb on - strand at 1260.214 kb on + strand at 1260.214 kb on + strand at 1260.215 kb on - strand at 1260.215 kb on - strand at 1260.215 kb on - strand at 1260.216 kb on + strand at 1260.216 kb on + strand at 1260.216 kb on + strand at 1260.216 kb on + strand at 1260.216 kb on + strand at 1260.216 kb on + strand at 1260.216 kb on + strand at 1260.216 kb on + strand at 1260.216 kb on + strand at 1260.216 kb on + strand at 1260.217 kb on - strand at 1260.217 kb on - strand at 1260.217 kb on - strand at 1260.217 kb on - strand at 1260.283 kb on + strand at 1260.283 kb on + strand at 1260.284 kb on - strand at 1260.341 kb on - strand at 1260.367 kb on + strand, within AO353_05705 at 1260.367 kb on + strand, within AO353_05705 at 1260.367 kb on + strand, within AO353_05705 at 1260.367 kb on + strand, within AO353_05705 at 1260.367 kb on + strand, within AO353_05705 at 1260.367 kb on + strand, within AO353_05705 at 1260.461 kb on - strand, within AO353_05705 at 1260.496 kb on + strand, within AO353_05705 at 1260.496 kb on + strand, within AO353_05705 at 1260.496 kb on + strand, within AO353_05705 at 1260.497 kb on - strand, within AO353_05705 at 1260.497 kb on - strand, within AO353_05705 at 1260.497 kb on - strand, within AO353_05705 at 1260.497 kb on - strand, within AO353_05705 at 1260.509 kb on - strand, within AO353_05705 at 1260.616 kb on + strand, within AO353_05705 at 1260.616 kb on + strand, within AO353_05705 at 1260.616 kb on + strand, within AO353_05705 at 1260.682 kb on + strand, within AO353_05705 at 1260.682 kb on + strand, within AO353_05705 at 1260.682 kb on + strand, within AO353_05705 at 1260.682 kb on + strand, within AO353_05705 at 1260.682 kb on + strand, within AO353_05705 at 1260.682 kb on + strand, within AO353_05705 at 1260.682 kb on + strand, within AO353_05705 at 1260.682 kb on + strand, within AO353_05705 at 1260.682 kb on + strand, within AO353_05705 at 1260.683 kb on - strand, within AO353_05705 at 1260.683 kb on - strand, within AO353_05705 at 1260.683 kb on - strand, within AO353_05705 at 1260.683 kb on - strand, within AO353_05705 at 1261.258 kb on + strand, within AO353_05710 at 1261.258 kb on + strand, within AO353_05710 at 1261.258 kb on + strand, within AO353_05710 at 1261.258 kb on + strand, within AO353_05710 at 1261.258 kb on + strand, within AO353_05710 at 1261.258 kb on + strand, within AO353_05710 at 1261.258 kb on + strand, within AO353_05710 at 1261.258 kb on + strand, within AO353_05710 at 1261.259 kb on - strand, within AO353_05710 at 1261.259 kb on - strand, within AO353_05710 at 1261.259 kb on - strand, within AO353_05710 at 1261.259 kb on - strand, within AO353_05710 at 1261.259 kb on - strand, within AO353_05710 at 1261.259 kb on - strand, within AO353_05710 at 1261.259 kb on - strand, within AO353_05710 at 1261.277 kb on + strand, within AO353_05710 at 1261.277 kb on + strand, within AO353_05710 at 1261.277 kb on + strand, within AO353_05710 at 1261.277 kb on + strand, within AO353_05710 at 1261.277 kb on + strand, within AO353_05710 at 1261.277 kb on + strand, within AO353_05710 at 1261.277 kb on + strand, within AO353_05710 at 1261.277 kb on + strand, within AO353_05710 at 1261.277 kb on + strand, within AO353_05710 at 1261.278 kb on - strand, within AO353_05710 at 1261.565 kb on + strand, within AO353_05710 at 1261.565 kb on + strand, within AO353_05710 at 1261.565 kb on + strand, within AO353_05710 at 1261.565 kb on + strand, within AO353_05710 at 1261.565 kb on + strand, within AO353_05710 at 1261.565 kb on + strand, within AO353_05710 at 1261.565 kb on + strand, within AO353_05710 at 1261.565 kb on + strand, within AO353_05710 at 1261.565 kb on + strand, within AO353_05710 at 1261.565 kb on + strand, within AO353_05710 at 1261.565 kb on + strand, within AO353_05710 at 1261.565 kb on + strand, within AO353_05710 at 1261.565 kb on + strand, within AO353_05710 at 1261.566 kb on - strand, within AO353_05710 at 1261.566 kb on - strand, within AO353_05710 at 1261.566 kb on - strand, within AO353_05710 at 1261.566 kb on - strand, within AO353_05710 at 1261.566 kb on - strand, within AO353_05710 at 1261.566 kb on - strand, within AO353_05710 at 1261.566 kb on - strand, within AO353_05710 at 1261.566 kb on - strand, within AO353_05710 at 1261.566 kb on - strand, within AO353_05710 at 1261.566 kb on - strand, within AO353_05710 at 1261.566 kb on - strand, within AO353_05710 at 1261.566 kb on - strand, within AO353_05710 at 1261.566 kb on - strand, within AO353_05710 at 1261.568 kb on + strand, within AO353_05710 at 1261.568 kb on + strand, within AO353_05710 at 1261.568 kb on + strand, within AO353_05710 at 1261.568 kb on + strand, within AO353_05710 at 1261.568 kb on + strand, within AO353_05710 at 1261.568 kb on + strand, within AO353_05710 at 1261.568 kb on + strand, within AO353_05710 at 1261.569 kb on - strand, within AO353_05710 at 1261.569 kb on - strand, within AO353_05710 at 1261.569 kb on - strand, within AO353_05710 at 1261.569 kb on - strand, within AO353_05710 at 1261.569 kb on - strand, within AO353_05710 at 1261.569 kb on - strand, within AO353_05710 at 1261.569 kb on - strand, within AO353_05710 at 1261.635 kb on + strand, within AO353_05710 at 1261.635 kb on + strand, within AO353_05710 at 1261.635 kb on + strand, within AO353_05710 at 1261.635 kb on + strand, within AO353_05710 at 1261.635 kb on + strand, within AO353_05710 at 1261.635 kb on + strand, within AO353_05710 at 1261.635 kb on + strand, within AO353_05710 at 1261.635 kb on + strand, within AO353_05710 at 1261.635 kb on + strand, within AO353_05710 at 1261.636 kb on - strand, within AO353_05710 at 1261.636 kb on - strand, within AO353_05710 at 1261.636 kb on - strand, within AO353_05710 at 1261.636 kb on - strand, within AO353_05710 at 1261.861 kb on + strand, within AO353_05710 at 1261.861 kb on + strand, within AO353_05710 at 1261.862 kb on - strand, within AO353_05710 at 1261.862 kb on - strand, within AO353_05710 at 1261.862 kb on - strand, within AO353_05710 at 1261.914 kb on + strand, within AO353_05710 at 1261.914 kb on + strand, within AO353_05710 at 1261.914 kb on + strand, within AO353_05710 at 1261.914 kb on + strand, within AO353_05710 at 1261.914 kb on + strand, within AO353_05710 at 1261.914 kb on + strand, within AO353_05710 at 1261.914 kb on + strand, within AO353_05710 at 1261.914 kb on + strand, within AO353_05710 at 1261.915 kb on - strand, within AO353_05710 at 1261.915 kb on - strand, within AO353_05710 at 1261.915 kb on - strand, within AO353_05710 at 1261.915 kb on - strand, within AO353_05710 at 1261.915 kb on - strand, within AO353_05710 at 1261.915 kb on - strand, within AO353_05710 at 1261.915 kb on - strand, within AO353_05710 at 1261.915 kb on - strand, within AO353_05710 at 1261.915 kb on - strand, within AO353_05710 at 1261.915 kb on - strand, within AO353_05710 at 1262.082 kb on + strand, within AO353_05710 at 1262.082 kb on + strand, within AO353_05710 at 1262.083 kb on - strand, within AO353_05710
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 1,259,452 + AO353_05700 0.61 -4.2 1,259,452 + AO353_05700 0.61 -0.3 1,259,452 + AO353_05700 0.61 -3.2 1,259,452 + AO353_05700 0.61 -2.6 1,259,452 + AO353_05700 0.61 -2.1 1,259,452 + AO353_05700 0.61 -3.0 1,259,452 + AO353_05700 0.61 -0.9 1,259,452 + AO353_05700 0.61 +0.7 1,259,453 - AO353_05700 0.61 -2.9 1,259,453 - AO353_05700 0.61 -3.2 1,259,453 - AO353_05700 0.61 -2.2 1,259,453 - AO353_05700 0.61 -2.3 1,259,453 - AO353_05700 0.61 -2.6 1,259,453 - AO353_05700 0.61 -1.1 1,259,453 - AO353_05700 0.61 -2.4 1,259,453 - AO353_05700 0.61 -2.0 1,259,453 - AO353_05700 0.61 -4.1 1,259,453 - AO353_05700 0.61 -2.1 1,259,519 + AO353_05700 0.65 -3.0 1,259,643 + AO353_05700 0.72 -1.1 1,259,682 + AO353_05700 0.74 -2.0 1,259,682 + AO353_05700 0.74 -1.8 1,259,728 + AO353_05700 0.77 -2.8 1,259,728 + AO353_05700 0.77 -0.1 1,259,729 - AO353_05700 0.77 -1.5 1,259,729 - AO353_05700 0.77 -2.0 1,259,729 - -0.1 1,259,729 - AO353_05700 0.77 -1.7 1,259,729 - AO353_05700 0.77 -2.2 1,259,729 - AO353_05700 0.77 -2.7 1,259,729 - AO353_05700 0.77 -0.8 1,259,759 + AO353_05700 0.79 -1.3 1,259,759 + AO353_05700 0.79 -1.5 1,259,759 + AO353_05700 0.79 -3.0 1,259,760 - AO353_05700 0.79 -1.2 1,260,044 + -1.7 1,260,044 + -2.5 1,260,045 - -2.8 1,260,045 - -0.6 1,260,045 - -2.8 1,260,045 - -4.0 1,260,045 - -2.0 1,260,045 - -2.0 1,260,088 + -1.6 1,260,089 - -0.3 1,260,089 - -1.9 1,260,115 + -1.3 1,260,115 + +0.4 1,260,115 + +1.2 1,260,115 + +0.2 1,260,116 - -1.5 1,260,116 - -2.5 1,260,116 - -1.1 1,260,116 - -2.8 1,260,116 - -1.3 1,260,116 - -2.1 1,260,121 + -0.5 1,260,121 + -1.8 1,260,121 + -0.0 1,260,121 + -0.6 1,260,122 - -0.9 1,260,122 - -1.1 1,260,155 + -1.6 1,260,156 - -2.2 1,260,214 + -1.8 1,260,214 + -2.9 1,260,215 - -0.6 1,260,215 - -2.3 1,260,215 - -3.0 1,260,216 + -0.1 1,260,216 + -2.8 1,260,216 + -3.4 1,260,216 + -2.7 1,260,216 + -2.4 1,260,216 + -4.4 1,260,216 + -3.3 1,260,216 + -1.5 1,260,216 + -2.1 1,260,216 + -2.2 1,260,217 - -1.7 1,260,217 - -1.9 1,260,217 - -1.5 1,260,217 - -2.6 1,260,283 + -2.2 1,260,283 + -0.9 1,260,284 - +0.4 1,260,341 - -1.8 1,260,367 + AO353_05705 0.12 -2.2 1,260,367 + AO353_05705 0.12 -3.3 1,260,367 + AO353_05705 0.12 -1.3 1,260,367 + AO353_05705 0.12 -2.5 1,260,367 + AO353_05705 0.12 -2.4 1,260,367 + AO353_05705 0.12 -1.8 1,260,461 - AO353_05705 0.23 -4.3 1,260,496 + AO353_05705 0.28 -2.9 1,260,496 + AO353_05705 0.28 -0.9 1,260,496 + AO353_05705 0.28 -3.0 1,260,497 - AO353_05705 0.28 -1.6 1,260,497 - AO353_05705 0.28 -3.5 1,260,497 - AO353_05705 0.28 -3.2 1,260,497 - AO353_05705 0.28 -3.6 1,260,509 - AO353_05705 0.29 -3.0 1,260,616 + AO353_05705 0.42 -2.0 1,260,616 + AO353_05705 0.42 -2.2 1,260,616 + AO353_05705 0.42 -4.6 1,260,682 + AO353_05705 0.50 -3.3 1,260,682 + AO353_05705 0.50 -2.0 1,260,682 + AO353_05705 0.50 -1.3 1,260,682 + AO353_05705 0.50 -3.3 1,260,682 + AO353_05705 0.50 -2.7 1,260,682 + AO353_05705 0.50 -2.0 1,260,682 + AO353_05705 0.50 -2.5 1,260,682 + AO353_05705 0.50 -2.3 1,260,682 + AO353_05705 0.50 -0.5 1,260,683 - AO353_05705 0.50 -0.9 1,260,683 - AO353_05705 0.50 -0.8 1,260,683 - AO353_05705 0.50 -0.8 1,260,683 - AO353_05705 0.50 -1.5 1,261,258 + AO353_05710 0.12 -3.7 1,261,258 + AO353_05710 0.12 -1.2 1,261,258 + AO353_05710 0.12 -2.4 1,261,258 + AO353_05710 0.12 -1.8 1,261,258 + AO353_05710 0.12 -2.8 1,261,258 + AO353_05710 0.12 -2.5 1,261,258 + AO353_05710 0.12 -1.1 1,261,258 + AO353_05710 0.12 -2.6 1,261,259 - AO353_05710 0.12 -2.4 1,261,259 - AO353_05710 0.12 -3.4 1,261,259 - AO353_05710 0.12 +0.2 1,261,259 - AO353_05710 0.12 -2.6 1,261,259 - AO353_05710 0.12 -4.1 1,261,259 - AO353_05710 0.12 -2.7 1,261,259 - AO353_05710 0.12 -1.3 1,261,277 + AO353_05710 0.13 -2.1 1,261,277 + AO353_05710 0.13 -0.8 1,261,277 + AO353_05710 0.13 -1.7 1,261,277 + AO353_05710 0.13 -1.3 1,261,277 + AO353_05710 0.13 -2.5 1,261,277 + AO353_05710 0.13 -2.5 1,261,277 + AO353_05710 0.13 -4.2 1,261,277 + AO353_05710 0.13 -1.1 1,261,277 + AO353_05710 0.13 -0.6 1,261,278 - AO353_05710 0.13 -0.8 1,261,565 + AO353_05710 0.33 -3.5 1,261,565 + AO353_05710 0.33 -3.9 1,261,565 + AO353_05710 0.33 -1.8 1,261,565 + AO353_05710 0.33 -1.1 1,261,565 + AO353_05710 0.33 +0.8 1,261,565 + AO353_05710 0.33 -2.7 1,261,565 + AO353_05710 0.33 -1.0 1,261,565 + AO353_05710 0.33 -1.9 1,261,565 + AO353_05710 0.33 -3.6 1,261,565 + AO353_05710 0.33 -1.8 1,261,565 + AO353_05710 0.33 -3.2 1,261,565 + AO353_05710 0.33 -3.9 1,261,565 + AO353_05710 0.33 -3.7 1,261,566 - AO353_05710 0.33 -2.1 1,261,566 - AO353_05710 0.33 -2.9 1,261,566 - AO353_05710 0.33 -1.8 1,261,566 - AO353_05710 0.33 -0.6 1,261,566 - AO353_05710 0.33 -2.9 1,261,566 - AO353_05710 0.33 -0.3 1,261,566 - AO353_05710 0.33 -1.3 1,261,566 - AO353_05710 0.33 -2.8 1,261,566 - AO353_05710 0.33 -1.8 1,261,566 - AO353_05710 0.33 -4.5 1,261,566 - AO353_05710 0.33 -1.5 1,261,566 - AO353_05710 0.33 -1.8 1,261,566 - AO353_05710 0.33 -0.6 1,261,568 + AO353_05710 0.33 -1.7 1,261,568 + AO353_05710 0.33 -0.8 1,261,568 + AO353_05710 0.33 -0.6 1,261,568 + AO353_05710 0.33 -2.8 1,261,568 + AO353_05710 0.33 -2.8 1,261,568 + AO353_05710 0.33 -0.9 1,261,568 + AO353_05710 0.33 -0.8 1,261,569 - AO353_05710 0.33 -3.4 1,261,569 - AO353_05710 0.33 -3.1 1,261,569 - AO353_05710 0.33 -0.9 1,261,569 - AO353_05710 0.33 -2.2 1,261,569 - AO353_05710 0.33 -0.7 1,261,569 - AO353_05710 0.33 -2.5 1,261,569 - AO353_05710 0.33 -3.3 1,261,635 + AO353_05710 0.38 -1.8 1,261,635 + AO353_05710 0.38 -2.5 1,261,635 + AO353_05710 0.38 -1.5 1,261,635 + AO353_05710 0.38 -2.6 1,261,635 + AO353_05710 0.38 -2.2 1,261,635 + AO353_05710 0.38 -1.1 1,261,635 + AO353_05710 0.38 -1.1 1,261,635 + AO353_05710 0.38 -2.8 1,261,635 + AO353_05710 0.38 -2.6 1,261,636 - AO353_05710 0.38 -1.1 1,261,636 - AO353_05710 0.38 -1.8 1,261,636 - AO353_05710 0.38 -3.3 1,261,636 - AO353_05710 0.38 -2.2 1,261,861 + AO353_05710 0.53 -2.4 1,261,861 + AO353_05710 0.53 -1.6 1,261,862 - AO353_05710 0.53 -1.1 1,261,862 - AO353_05710 0.53 -2.1 1,261,862 - AO353_05710 0.53 -0.6 1,261,914 + AO353_05710 0.57 -0.8 1,261,914 + AO353_05710 0.57 +0.2 1,261,914 + AO353_05710 0.57 -2.8 1,261,914 + AO353_05710 0.57 -1.2 1,261,914 + AO353_05710 0.57 -1.0 1,261,914 + AO353_05710 0.57 -0.8 1,261,914 + AO353_05710 0.57 -0.9 1,261,914 + AO353_05710 0.57 -1.8 1,261,915 - AO353_05710 0.57 +0.2 1,261,915 - AO353_05710 0.57 -0.1 1,261,915 - AO353_05710 0.57 -1.8 1,261,915 - AO353_05710 0.57 -2.4 1,261,915 - AO353_05710 0.57 -1.2 1,261,915 - AO353_05710 0.57 -0.9 1,261,915 - AO353_05710 0.57 -2.2 1,261,915 - AO353_05710 0.57 -0.9 1,261,915 - AO353_05710 0.57 -2.7 1,261,915 - AO353_05710 0.57 -1.8 1,262,082 + AO353_05710 0.68 +0.5 1,262,082 + AO353_05710 0.68 -1.2 1,262,083 - AO353_05710 0.68 -3.3
Or see this region's nucleotide sequence