Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04055 and AO353_04060 are separated by 120 nucleotides AO353_04060 and AO353_04065 overlap by 4 nucleotides AO353_04065 and AO353_04070 overlap by 14 nucleotides AO353_04070 and AO353_04075 overlap by 4 nucleotides
AO353_04055: AO353_04055 - methionine--tRNA ligase, at 871,952 to 874,003
_04055
AO353_04060: AO353_04060 - NADH:quinone oxidoreductase, at 874,124 to 874,711
_04060
AO353_04065: AO353_04065 - electron transporter RnfB, at 874,708 to 875,922
_04065
AO353_04070: AO353_04070 - electron transporter RnfD, at 875,909 to 876,907
_04070
AO353_04075: AO353_04075 - electron transporter RnfG, at 876,904 to 877,509
_04075
Position (kb) 874
875
876 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 874.001 kb on + strand at 874.001 kb on + strand at 874.001 kb on + strand at 874.001 kb on + strand at 874.001 kb on + strand at 874.001 kb on + strand at 874.001 kb on + strand at 874.001 kb on + strand at 874.001 kb on + strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.060 kb on + strand at 874.075 kb on + strand at 874.089 kb on + strand at 874.089 kb on + strand at 874.168 kb on + strand at 874.168 kb on + strand at 874.313 kb on + strand, within AO353_04060 at 874.313 kb on + strand, within AO353_04060 at 874.352 kb on + strand, within AO353_04060 at 874.352 kb on + strand, within AO353_04060 at 874.352 kb on + strand, within AO353_04060 at 874.352 kb on + strand, within AO353_04060 at 874.353 kb on - strand, within AO353_04060 at 874.353 kb on - strand, within AO353_04060 at 874.380 kb on + strand, within AO353_04060 at 874.380 kb on + strand, within AO353_04060 at 874.381 kb on - strand, within AO353_04060 at 874.381 kb on - strand, within AO353_04060 at 874.390 kb on + strand, within AO353_04060 at 874.391 kb on - strand, within AO353_04060 at 874.523 kb on + strand, within AO353_04060 at 874.524 kb on - strand, within AO353_04060 at 874.530 kb on + strand, within AO353_04060 at 874.530 kb on + strand, within AO353_04060 at 874.530 kb on + strand, within AO353_04060 at 874.536 kb on + strand, within AO353_04060 at 874.536 kb on + strand, within AO353_04060 at 874.536 kb on + strand, within AO353_04060 at 874.536 kb on + strand, within AO353_04060 at 874.536 kb on + strand, within AO353_04060 at 874.537 kb on - strand, within AO353_04060 at 874.537 kb on - strand, within AO353_04060 at 874.537 kb on - strand at 874.537 kb on - strand, within AO353_04060 at 874.725 kb on + strand at 874.725 kb on + strand at 874.725 kb on + strand at 874.787 kb on - strand at 874.933 kb on - strand, within AO353_04065 at 874.986 kb on - strand, within AO353_04065 at 875.060 kb on + strand, within AO353_04065 at 875.060 kb on + strand, within AO353_04065 at 875.061 kb on - strand, within AO353_04065 at 875.061 kb on - strand, within AO353_04065 at 875.099 kb on + strand, within AO353_04065 at 875.100 kb on - strand, within AO353_04065 at 875.742 kb on - strand, within AO353_04065 at 875.742 kb on - strand, within AO353_04065 at 875.801 kb on - strand at 875.841 kb on + strand at 875.841 kb on + strand at 875.841 kb on + strand at 875.841 kb on + strand at 875.841 kb on + strand at 875.841 kb on + strand at 875.842 kb on - strand at 875.842 kb on - strand at 875.842 kb on - strand at 875.842 kb on - strand at 875.842 kb on - strand at 875.842 kb on - strand at 875.842 kb on - strand at 875.900 kb on + strand at 875.900 kb on + strand at 875.901 kb on - strand at 875.908 kb on + strand at 875.908 kb on + strand at 875.908 kb on + strand at 875.908 kb on + strand at 875.909 kb on - strand at 875.909 kb on - strand at 875.909 kb on - strand at 875.909 kb on - strand at 875.909 kb on - strand at 875.909 kb on - strand at 875.909 kb on - strand at 875.909 kb on - strand at 875.964 kb on + strand at 876.003 kb on + strand at 876.003 kb on + strand at 876.089 kb on + strand, within AO353_04070 at 876.090 kb on - strand, within AO353_04070 at 876.157 kb on - strand, within AO353_04070 at 876.164 kb on + strand, within AO353_04070 at 876.164 kb on + strand, within AO353_04070 at 876.164 kb on + strand, within AO353_04070 at 876.164 kb on + strand, within AO353_04070 at 876.164 kb on + strand, within AO353_04070 at 876.164 kb on + strand, within AO353_04070 at 876.165 kb on - strand, within AO353_04070 at 876.165 kb on - strand, within AO353_04070 at 876.165 kb on - strand, within AO353_04070 at 876.165 kb on - strand, within AO353_04070 at 876.165 kb on - strand, within AO353_04070 at 876.165 kb on - strand, within AO353_04070 at 876.165 kb on - strand, within AO353_04070 at 876.165 kb on - strand, within AO353_04070 at 876.282 kb on + strand, within AO353_04070 at 876.283 kb on - strand, within AO353_04070 at 876.283 kb on - strand, within AO353_04070 at 876.283 kb on - strand, within AO353_04070 at 876.283 kb on - strand, within AO353_04070 at 876.424 kb on + strand, within AO353_04070 at 876.500 kb on - strand, within AO353_04070 at 876.505 kb on + strand, within AO353_04070 at 876.506 kb on - strand, within AO353_04070 at 876.552 kb on + strand, within AO353_04070 at 876.707 kb on - strand, within AO353_04070 at 876.785 kb on + strand, within AO353_04070 at 876.785 kb on + strand, within AO353_04070 at 876.785 kb on + strand, within AO353_04070 at 876.785 kb on + strand, within AO353_04070 at 876.786 kb on + strand, within AO353_04070 at 876.786 kb on - strand, within AO353_04070 at 876.786 kb on - strand, within AO353_04070 at 876.786 kb on - strand, within AO353_04070 at 876.898 kb on + strand at 876.898 kb on + strand at 876.899 kb on - strand at 876.899 kb on - strand at 876.899 kb on - strand at 876.899 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 874,001 + -0.2 874,001 + +0.8 874,001 + -0.2 874,001 + -1.5 874,001 + +0.3 874,001 + -0.2 874,001 + +0.1 874,001 + +0.5 874,001 + -1.7 874,002 - +0.4 874,002 - -0.1 874,002 - -0.2 874,002 - -0.3 874,002 - -0.2 874,002 - +0.1 874,002 - +0.5 874,002 - +0.6 874,002 - -0.5 874,002 - +0.4 874,002 - -2.2 874,002 - +0.1 874,002 - +1.1 874,002 - -0.7 874,002 - -0.3 874,002 - -0.1 874,002 - +0.2 874,002 - +0.4 874,002 - -0.0 874,002 - -1.5 874,060 + +0.0 874,075 + +0.5 874,089 + -0.9 874,089 + -0.3 874,168 + +0.0 874,168 + -0.1 874,313 + AO353_04060 0.32 +0.8 874,313 + AO353_04060 0.32 +0.3 874,352 + AO353_04060 0.39 -0.2 874,352 + AO353_04060 0.39 -0.0 874,352 + AO353_04060 0.39 +0.3 874,352 + AO353_04060 0.39 +0.5 874,353 - AO353_04060 0.39 +1.3 874,353 - AO353_04060 0.39 -0.8 874,380 + AO353_04060 0.44 -0.4 874,380 + AO353_04060 0.44 +0.1 874,381 - AO353_04060 0.44 +1.5 874,381 - AO353_04060 0.44 +0.5 874,390 + AO353_04060 0.45 -0.2 874,391 - AO353_04060 0.45 +2.7 874,523 + AO353_04060 0.68 -0.7 874,524 - AO353_04060 0.68 -0.2 874,530 + AO353_04060 0.69 +1.5 874,530 + AO353_04060 0.69 +0.5 874,530 + AO353_04060 0.69 +1.1 874,536 + AO353_04060 0.70 -0.7 874,536 + AO353_04060 0.70 +0.6 874,536 + AO353_04060 0.70 +0.5 874,536 + AO353_04060 0.70 +0.5 874,536 + AO353_04060 0.70 +0.6 874,537 - AO353_04060 0.70 -0.3 874,537 - AO353_04060 0.70 +0.3 874,537 - +0.5 874,537 - AO353_04060 0.70 -0.8 874,725 + -0.3 874,725 + +0.4 874,725 + -0.7 874,787 - -0.9 874,933 - AO353_04065 0.19 +1.0 874,986 - AO353_04065 0.23 +0.7 875,060 + AO353_04065 0.29 +1.1 875,060 + AO353_04065 0.29 +1.4 875,061 - AO353_04065 0.29 -1.0 875,061 - AO353_04065 0.29 -1.5 875,099 + AO353_04065 0.32 +2.3 875,100 - AO353_04065 0.32 -2.4 875,742 - AO353_04065 0.85 +1.2 875,742 - AO353_04065 0.85 +0.3 875,801 - +0.4 875,841 + +0.2 875,841 + +0.9 875,841 + +1.0 875,841 + +0.6 875,841 + +1.3 875,841 + -0.2 875,842 - +0.5 875,842 - +0.5 875,842 - +0.4 875,842 - -0.0 875,842 - +0.1 875,842 - +0.1 875,842 - +0.5 875,900 + +0.4 875,900 + +0.5 875,901 - -0.2 875,908 + +0.8 875,908 + -2.0 875,908 + -1.6 875,908 + +0.1 875,909 - -1.1 875,909 - -0.5 875,909 - -0.2 875,909 - -0.4 875,909 - -0.3 875,909 - -0.8 875,909 - +0.5 875,909 - +0.5 875,964 + -1.2 876,003 + +0.1 876,003 + -0.2 876,089 + AO353_04070 0.18 -0.4 876,090 - AO353_04070 0.18 -0.4 876,157 - AO353_04070 0.25 +1.5 876,164 + AO353_04070 0.26 +0.5 876,164 + AO353_04070 0.26 +0.3 876,164 + AO353_04070 0.26 +1.1 876,164 + AO353_04070 0.26 +0.7 876,164 + AO353_04070 0.26 +0.1 876,164 + AO353_04070 0.26 -0.5 876,165 - AO353_04070 0.26 +1.4 876,165 - AO353_04070 0.26 +0.1 876,165 - AO353_04070 0.26 -0.2 876,165 - AO353_04070 0.26 +2.1 876,165 - AO353_04070 0.26 -2.8 876,165 - AO353_04070 0.26 +0.2 876,165 - AO353_04070 0.26 +1.1 876,165 - AO353_04070 0.26 -0.7 876,282 + AO353_04070 0.37 +0.6 876,283 - AO353_04070 0.37 -1.2 876,283 - AO353_04070 0.37 -0.4 876,283 - AO353_04070 0.37 +0.2 876,283 - AO353_04070 0.37 -1.2 876,424 + AO353_04070 0.52 +0.5 876,500 - AO353_04070 0.59 -0.2 876,505 + AO353_04070 0.60 +0.1 876,506 - AO353_04070 0.60 -0.2 876,552 + AO353_04070 0.64 -0.0 876,707 - AO353_04070 0.80 +0.4 876,785 + AO353_04070 0.88 -0.5 876,785 + AO353_04070 0.88 +1.0 876,785 + AO353_04070 0.88 -0.6 876,785 + AO353_04070 0.88 -1.1 876,786 + AO353_04070 0.88 +0.4 876,786 - AO353_04070 0.88 -0.1 876,786 - AO353_04070 0.88 -0.8 876,786 - AO353_04070 0.88 -0.6 876,898 + -0.1 876,898 + -0.9 876,899 - -0.5 876,899 - -0.3 876,899 - -0.7 876,899 - +0.9
Or see this region's nucleotide sequence