Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02425

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02415 and AO353_02420 overlap by 14 nucleotidesAO353_02420 and AO353_02425 overlap by 4 nucleotidesAO353_02425 and AO353_02430 are separated by 40 nucleotidesAO353_02430 and AO353_02435 are separated by 40 nucleotides AO353_02415: AO353_02415 - ABC transporter permease, at 514,831 to 515,676 _02415 AO353_02420: AO353_02420 - ABC transporter permease, at 515,663 to 516,463 _02420 AO353_02425: AO353_02425 - spermidine/putrescine ABC transporter ATP-binding protein, at 516,460 to 517,464 _02425 AO353_02430: AO353_02430 - HAD family hydrolase, at 517,505 to 518,158 _02430 AO353_02435: AO353_02435 - NAD(P)H-quinone oxidoreductase, at 518,199 to 519,161 _02435 Position (kb) 516 517 518Strain fitness (log2 ratio) -2 -1 0 1 2at 515.483 kb on - strand, within AO353_02415at 515.494 kb on + strand, within AO353_02415at 515.494 kb on + strand, within AO353_02415at 515.560 kb on - strand, within AO353_02415at 515.560 kb on - strand, within AO353_02415at 515.659 kb on + strandat 515.659 kb on + strandat 515.659 kb on + strandat 515.660 kb on - strandat 515.660 kb on - strandat 515.660 kb on - strandat 515.660 kb on - strandat 515.660 kb on - strandat 515.660 kb on - strandat 515.660 kb on - strandat 515.660 kb on - strandat 515.660 kb on - strandat 515.660 kb on - strandat 515.696 kb on + strandat 515.697 kb on - strandat 515.697 kb on - strandat 515.714 kb on + strandat 515.715 kb on - strandat 515.763 kb on - strand, within AO353_02420at 515.763 kb on - strand, within AO353_02420at 515.763 kb on - strand, within AO353_02420at 515.763 kb on - strand, within AO353_02420at 515.822 kb on + strand, within AO353_02420at 515.822 kb on + strand, within AO353_02420at 515.822 kb on + strand, within AO353_02420at 515.823 kb on - strand, within AO353_02420at 515.823 kb on - strand, within AO353_02420at 515.823 kb on - strand, within AO353_02420at 515.823 kb on - strand, within AO353_02420at 515.823 kb on - strand, within AO353_02420at 515.823 kb on - strand, within AO353_02420at 515.823 kb on - strand, within AO353_02420at 515.824 kb on + strand, within AO353_02420at 515.825 kb on - strand, within AO353_02420at 515.942 kb on + strandat 515.943 kb on - strand, within AO353_02420at 515.943 kb on - strand, within AO353_02420at 515.943 kb on - strand, within AO353_02420at 516.038 kb on + strand, within AO353_02420at 516.038 kb on + strand, within AO353_02420at 516.039 kb on - strand, within AO353_02420at 516.039 kb on - strand, within AO353_02420at 516.092 kb on + strand, within AO353_02420at 516.092 kb on + strand, within AO353_02420at 516.092 kb on + strand, within AO353_02420at 516.092 kb on + strand, within AO353_02420at 516.119 kb on + strand, within AO353_02420at 516.119 kb on + strand, within AO353_02420at 516.341 kb on + strand, within AO353_02420at 516.341 kb on + strand, within AO353_02420at 516.341 kb on + strand, within AO353_02420at 516.341 kb on + strand, within AO353_02420at 516.342 kb on - strand, within AO353_02420at 516.342 kb on - strand, within AO353_02420at 516.342 kb on - strand, within AO353_02420at 516.349 kb on + strand, within AO353_02420at 516.349 kb on + strand, within AO353_02420at 516.349 kb on + strand, within AO353_02420at 516.349 kb on + strand, within AO353_02420at 516.349 kb on + strand, within AO353_02420at 516.350 kb on - strand, within AO353_02420at 516.350 kb on - strand, within AO353_02420at 516.350 kb on - strand, within AO353_02420at 516.350 kb on - strand, within AO353_02420at 516.350 kb on - strand, within AO353_02420at 516.350 kb on - strand, within AO353_02420at 516.359 kb on - strand, within AO353_02420at 516.359 kb on - strand, within AO353_02420at 516.359 kb on - strand, within AO353_02420at 516.359 kb on - strand, within AO353_02420at 516.399 kb on - strandat 516.436 kb on + strandat 516.437 kb on - strandat 516.437 kb on - strandat 516.466 kb on + strandat 516.466 kb on + strandat 516.466 kb on + strandat 516.466 kb on + strandat 516.466 kb on + strandat 516.466 kb on + strandat 516.466 kb on + strandat 516.466 kb on + strandat 516.466 kb on + strandat 516.466 kb on + strandat 516.466 kb on + strandat 516.467 kb on - strandat 516.467 kb on - strandat 516.467 kb on - strandat 516.467 kb on - strandat 516.467 kb on - strandat 516.467 kb on - strandat 516.724 kb on + strand, within AO353_02425at 516.724 kb on + strand, within AO353_02425at 516.724 kb on + strand, within AO353_02425at 516.724 kb on + strand, within AO353_02425at 516.724 kb on + strand, within AO353_02425at 516.725 kb on - strand, within AO353_02425at 516.725 kb on - strand, within AO353_02425at 516.725 kb on - strand, within AO353_02425at 517.138 kb on + strand, within AO353_02425at 517.138 kb on + strand, within AO353_02425at 517.138 kb on + strand, within AO353_02425at 517.139 kb on - strand, within AO353_02425at 517.139 kb on - strand, within AO353_02425at 517.139 kb on - strand, within AO353_02425at 517.139 kb on - strand, within AO353_02425at 517.183 kb on + strand, within AO353_02425at 517.183 kb on + strand, within AO353_02425at 517.183 kb on + strand, within AO353_02425at 517.183 kb on + strand, within AO353_02425at 517.183 kb on + strand, within AO353_02425at 517.183 kb on + strand, within AO353_02425at 517.184 kb on - strand, within AO353_02425at 517.184 kb on - strand, within AO353_02425at 517.184 kb on - strand, within AO353_02425at 517.184 kb on - strand, within AO353_02425at 517.184 kb on - strand, within AO353_02425at 517.184 kb on - strand, within AO353_02425at 517.184 kb on - strand, within AO353_02425at 517.457 kb on + strandat 517.457 kb on + strandat 517.458 kb on - strandat 517.487 kb on - strandat 517.644 kb on - strand, within AO353_02430at 517.644 kb on - strand, within AO353_02430at 517.673 kb on + strand, within AO353_02430at 517.673 kb on + strand, within AO353_02430at 517.673 kb on + strand, within AO353_02430at 517.673 kb on + strand, within AO353_02430at 517.673 kb on + strand, within AO353_02430at 517.673 kb on + strand, within AO353_02430at 517.673 kb on + strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.674 kb on - strand, within AO353_02430at 517.902 kb on + strand, within AO353_02430at 517.902 kb on + strand, within AO353_02430at 517.902 kb on + strand, within AO353_02430at 517.903 kb on - strand, within AO353_02430at 517.903 kb on - strand, within AO353_02430at 517.903 kb on - strand, within AO353_02430at 517.903 kb on - strand, within AO353_02430at 517.903 kb on - strand, within AO353_02430at 517.903 kb on - strand, within AO353_02430at 517.903 kb on - strand, within AO353_02430at 517.903 kb on - strand, within AO353_02430at 517.903 kb on - strand, within AO353_02430at 517.928 kb on + strand, within AO353_02430at 517.928 kb on + strand, within AO353_02430at 517.928 kb on + strand, within AO353_02430at 517.929 kb on - strand, within AO353_02430at 517.958 kb on + strand, within AO353_02430at 517.959 kb on - strand, within AO353_02430at 518.033 kb on + strand, within AO353_02430at 518.034 kb on - strand, within AO353_02430at 518.034 kb on - strand, within AO353_02430at 518.197 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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515,483 - AO353_02415 0.77 +1.6
515,494 + AO353_02415 0.78 -0.1
515,494 + AO353_02415 0.78 +0.1
515,560 - AO353_02415 0.86 -0.3
515,560 - AO353_02415 0.86 -0.7
515,659 + +0.3
515,659 + +0.7
515,659 + +0.7
515,660 - -0.3
515,660 - -0.5
515,660 - -0.6
515,660 - +0.1
515,660 - +1.6
515,660 - -0.3
515,660 - +0.2
515,660 - -0.4
515,660 - -0.1
515,660 - -1.0
515,696 + +0.6
515,697 - +0.5
515,697 - -0.3
515,714 + +0.4
515,715 - +0.3
515,763 - AO353_02420 0.12 -0.0
515,763 - AO353_02420 0.12 +0.1
515,763 - AO353_02420 0.12 +0.7
515,763 - AO353_02420 0.12 +0.6
515,822 + AO353_02420 0.20 -0.1
515,822 + AO353_02420 0.20 +0.7
515,822 + AO353_02420 0.20 +2.3
515,823 - AO353_02420 0.20 +0.8
515,823 - AO353_02420 0.20 +0.2
515,823 - AO353_02420 0.20 -0.4
515,823 - AO353_02420 0.20 +0.4
515,823 - AO353_02420 0.20 +0.2
515,823 - AO353_02420 0.20 +1.2
515,823 - AO353_02420 0.20 -0.8
515,824 + AO353_02420 0.20 -0.9
515,825 - AO353_02420 0.20 -0.8
515,942 + +0.9
515,943 - AO353_02420 0.35 +0.6
515,943 - AO353_02420 0.35 -0.3
515,943 - AO353_02420 0.35 +0.1
516,038 + AO353_02420 0.47 -1.8
516,038 + AO353_02420 0.47 +0.7
516,039 - AO353_02420 0.47 +0.1
516,039 - AO353_02420 0.47 +0.7
516,092 + AO353_02420 0.54 +1.9
516,092 + AO353_02420 0.54 +0.9
516,092 + AO353_02420 0.54 -0.8
516,092 + AO353_02420 0.54 +0.8
516,119 + AO353_02420 0.57 +0.6
516,119 + AO353_02420 0.57 -0.3
516,341 + AO353_02420 0.85 -0.1
516,341 + AO353_02420 0.85 -1.0
516,341 + AO353_02420 0.85 -1.3
516,341 + AO353_02420 0.85 -0.6
516,342 - AO353_02420 0.85 +0.8
516,342 - AO353_02420 0.85 +0.6
516,342 - AO353_02420 0.85 -0.7
516,349 + AO353_02420 0.86 +0.3
516,349 + AO353_02420 0.86 -1.7
516,349 + AO353_02420 0.86 -0.7
516,349 + AO353_02420 0.86 -0.4
516,349 + AO353_02420 0.86 -0.4
516,350 - AO353_02420 0.86 -0.8
516,350 - AO353_02420 0.86 +0.0
516,350 - AO353_02420 0.86 -0.2
516,350 - AO353_02420 0.86 +0.8
516,350 - AO353_02420 0.86 -0.9
516,350 - AO353_02420 0.86 -0.9
516,359 - AO353_02420 0.87 -0.5
516,359 - AO353_02420 0.87 -0.9
516,359 - AO353_02420 0.87 +0.5
516,359 - AO353_02420 0.87 +0.2
516,399 - -2.6
516,436 + +0.0
516,437 - -0.1
516,437 - -0.3
516,466 + +0.3
516,466 + -1.2
516,466 + -0.7
516,466 + -0.2
516,466 + +0.1
516,466 + -0.7
516,466 + -0.1
516,466 + +0.3
516,466 + +0.6
516,466 + -0.5
516,466 + +0.1
516,467 - -0.4
516,467 - +0.7
516,467 - -0.2
516,467 - -0.6
516,467 - +1.5
516,467 - -0.4
516,724 + AO353_02425 0.26 -0.2
516,724 + AO353_02425 0.26 +1.2
516,724 + AO353_02425 0.26 +0.5
516,724 + AO353_02425 0.26 -1.1
516,724 + AO353_02425 0.26 +0.3
516,725 - AO353_02425 0.26 +0.3
516,725 - AO353_02425 0.26 -0.7
516,725 - AO353_02425 0.26 +1.5
517,138 + AO353_02425 0.67 -1.6
517,138 + AO353_02425 0.67 -0.2
517,138 + AO353_02425 0.67 -0.9
517,139 - AO353_02425 0.68 +0.3
517,139 - AO353_02425 0.68 +0.4
517,139 - AO353_02425 0.68 +0.6
517,139 - AO353_02425 0.68 +0.3
517,183 + AO353_02425 0.72 -1.1
517,183 + AO353_02425 0.72 -0.8
517,183 + AO353_02425 0.72 -0.1
517,183 + AO353_02425 0.72 +0.4
517,183 + AO353_02425 0.72 +1.9
517,183 + AO353_02425 0.72 +1.7
517,184 - AO353_02425 0.72 -0.1
517,184 - AO353_02425 0.72 +0.3
517,184 - AO353_02425 0.72 +1.0
517,184 - AO353_02425 0.72 +0.7
517,184 - AO353_02425 0.72 +0.8
517,184 - AO353_02425 0.72 -0.4
517,184 - AO353_02425 0.72 -0.1
517,457 + +1.1
517,457 + +0.8
517,458 - +0.7
517,487 - -1.9
517,644 - AO353_02430 0.21 -0.2
517,644 - AO353_02430 0.21 -0.3
517,673 + AO353_02430 0.26 -0.2
517,673 + AO353_02430 0.26 +0.6
517,673 + AO353_02430 0.26 -0.1
517,673 + AO353_02430 0.26 -1.1
517,673 + AO353_02430 0.26 -0.4
517,673 + AO353_02430 0.26 +0.1
517,673 + AO353_02430 0.26 +0.1
517,674 - AO353_02430 0.26 -0.2
517,674 - AO353_02430 0.26 -1.5
517,674 - AO353_02430 0.26 -0.1
517,674 - AO353_02430 0.26 +0.9
517,674 - AO353_02430 0.26 -1.4
517,674 - AO353_02430 0.26 +0.3
517,674 - AO353_02430 0.26 -1.2
517,674 - AO353_02430 0.26 -0.1
517,674 - AO353_02430 0.26 +0.2
517,674 - AO353_02430 0.26 -0.7
517,674 - AO353_02430 0.26 -1.0
517,674 - AO353_02430 0.26 -0.2
517,674 - AO353_02430 0.26 +0.4
517,674 - AO353_02430 0.26 -0.3
517,674 - AO353_02430 0.26 +0.2
517,902 + AO353_02430 0.61 +0.7
517,902 + AO353_02430 0.61 -0.1
517,902 + AO353_02430 0.61 -1.5
517,903 - AO353_02430 0.61 +0.3
517,903 - AO353_02430 0.61 +0.7
517,903 - AO353_02430 0.61 -0.0
517,903 - AO353_02430 0.61 +1.1
517,903 - AO353_02430 0.61 -0.4
517,903 - AO353_02430 0.61 +1.4
517,903 - AO353_02430 0.61 -1.1
517,903 - AO353_02430 0.61 -0.2
517,903 - AO353_02430 0.61 +0.1
517,928 + AO353_02430 0.65 -0.1
517,928 + AO353_02430 0.65 +0.5
517,928 + AO353_02430 0.65 +0.2
517,929 - AO353_02430 0.65 -0.0
517,958 + AO353_02430 0.69 +0.6
517,959 - AO353_02430 0.69 -0.1
518,033 + AO353_02430 0.81 +0.0
518,034 - AO353_02430 0.81 -0.1
518,034 - AO353_02430 0.81 +0.2
518,197 - -0.9

Or see this region's nucleotide sequence