Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02140

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02135 and AO353_02140 are separated by 270 nucleotidesAO353_02140 and AO353_02145 are separated by 13 nucleotidesAO353_02145 and AO353_02150 are separated by 192 nucleotides AO353_02135: AO353_02135 - hypothetical protein, at 458,668 to 459,609 _02135 AO353_02140: AO353_02140 - BolA family transcriptional regulator, at 459,880 to 460,179 _02140 AO353_02145: AO353_02145 - hypothetical protein, at 460,193 to 460,717 _02145 AO353_02150: AO353_02150 - fumarate hydratase, at 460,910 to 462,304 _02150 Position (kb) 459 460 461Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 458.886 kb on - strand, within AO353_02135at 458.886 kb on - strand, within AO353_02135at 458.984 kb on + strand, within AO353_02135at 458.984 kb on + strand, within AO353_02135at 458.984 kb on + strand, within AO353_02135at 458.985 kb on - strand, within AO353_02135at 458.985 kb on - strand, within AO353_02135at 459.041 kb on + strand, within AO353_02135at 459.041 kb on + strand, within AO353_02135at 459.041 kb on + strand, within AO353_02135at 459.041 kb on + strand, within AO353_02135at 459.042 kb on - strand, within AO353_02135at 459.042 kb on - strand, within AO353_02135at 459.128 kb on + strand, within AO353_02135at 459.201 kb on - strand, within AO353_02135at 459.201 kb on - strand, within AO353_02135at 459.201 kb on - strand, within AO353_02135at 459.272 kb on + strand, within AO353_02135at 459.272 kb on + strand, within AO353_02135at 459.272 kb on + strand, within AO353_02135at 459.272 kb on + strand, within AO353_02135at 459.272 kb on + strand, within AO353_02135at 459.272 kb on + strand, within AO353_02135at 459.272 kb on + strand, within AO353_02135at 459.272 kb on + strand, within AO353_02135at 459.273 kb on - strand, within AO353_02135at 459.273 kb on - strand, within AO353_02135at 459.273 kb on - strand, within AO353_02135at 459.273 kb on - strand, within AO353_02135at 459.273 kb on - strand, within AO353_02135at 459.273 kb on - strand, within AO353_02135at 459.273 kb on - strand, within AO353_02135at 459.273 kb on - strand, within AO353_02135at 459.273 kb on - strand, within AO353_02135at 459.273 kb on - strand, within AO353_02135at 459.273 kb on - strand, within AO353_02135at 459.273 kb on - strand, within AO353_02135at 459.374 kb on + strand, within AO353_02135at 459.374 kb on + strand, within AO353_02135at 459.374 kb on + strand, within AO353_02135at 459.554 kb on + strandat 459.554 kb on + strandat 459.554 kb on + strandat 459.555 kb on - strandat 459.576 kb on + strandat 459.576 kb on + strandat 459.576 kb on + strandat 459.576 kb on + strandat 459.576 kb on + strandat 459.576 kb on + strandat 459.576 kb on + strandat 459.577 kb on - strandat 459.577 kb on - strandat 459.577 kb on - strandat 459.577 kb on - strandat 459.577 kb on - strandat 459.577 kb on - strandat 459.577 kb on - strandat 459.577 kb on - strandat 459.577 kb on - strandat 459.577 kb on - strandat 459.577 kb on - strandat 459.577 kb on - strandat 459.577 kb on - strandat 459.578 kb on + strandat 459.578 kb on + strandat 459.578 kb on + strandat 459.578 kb on + strandat 459.578 kb on + strandat 459.578 kb on + strandat 459.578 kb on + strandat 459.578 kb on + strandat 459.578 kb on + strandat 459.578 kb on + strandat 459.578 kb on + strandat 459.578 kb on + strandat 459.578 kb on + strandat 459.578 kb on + strandat 459.579 kb on - strandat 459.579 kb on - strandat 459.579 kb on - strandat 459.579 kb on - strandat 459.715 kb on + strandat 459.778 kb on - strandat 459.821 kb on - strandat 459.824 kb on - strandat 459.824 kb on - strandat 459.824 kb on - strandat 459.951 kb on + strand, within AO353_02140at 459.951 kb on + strand, within AO353_02140at 459.951 kb on + strand, within AO353_02140at 459.952 kb on - strand, within AO353_02140at 459.952 kb on - strand, within AO353_02140at 459.952 kb on - strand, within AO353_02140at 459.953 kb on + strand, within AO353_02140at 459.953 kb on + strand, within AO353_02140at 459.953 kb on + strand, within AO353_02140at 459.953 kb on + strand, within AO353_02140at 459.953 kb on + strand, within AO353_02140at 459.953 kb on + strand, within AO353_02140at 459.953 kb on + strand, within AO353_02140at 459.953 kb on + strand, within AO353_02140at 459.953 kb on + strand, within AO353_02140at 459.953 kb on + strand, within AO353_02140at 459.953 kb on + strand, within AO353_02140at 459.953 kb on + strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.957 kb on + strand, within AO353_02140at 459.957 kb on + strand, within AO353_02140at 459.957 kb on + strand, within AO353_02140at 459.957 kb on + strand, within AO353_02140at 459.957 kb on + strand, within AO353_02140at 459.957 kb on + strand, within AO353_02140at 459.957 kb on + strand, within AO353_02140at 459.958 kb on - strand, within AO353_02140at 459.958 kb on - strand, within AO353_02140at 459.958 kb on - strand, within AO353_02140at 459.958 kb on - strand, within AO353_02140at 459.958 kb on - strand, within AO353_02140at 459.958 kb on - strand, within AO353_02140at 459.958 kb on - strand, within AO353_02140at 460.008 kb on - strand, within AO353_02140at 460.101 kb on + strand, within AO353_02140at 460.101 kb on + strand, within AO353_02140at 460.101 kb on + strand, within AO353_02140at 460.101 kb on + strand, within AO353_02140at 460.101 kb on + strand, within AO353_02140at 460.102 kb on - strand, within AO353_02140at 460.102 kb on - strand, within AO353_02140at 460.102 kb on - strand, within AO353_02140at 460.102 kb on - strand, within AO353_02140at 460.102 kb on - strand, within AO353_02140at 460.102 kb on - strand, within AO353_02140at 460.102 kb on - strand, within AO353_02140at 460.102 kb on - strand, within AO353_02140at 460.161 kb on + strandat 460.161 kb on + strandat 460.161 kb on + strandat 460.371 kb on + strand, within AO353_02145at 460.372 kb on - strand, within AO353_02145at 460.372 kb on - strand, within AO353_02145at 460.419 kb on + strand, within AO353_02145at 460.419 kb on + strand, within AO353_02145at 460.419 kb on + strand, within AO353_02145at 460.420 kb on - strand, within AO353_02145at 460.420 kb on - strand, within AO353_02145at 460.420 kb on - strand, within AO353_02145at 460.420 kb on - strand, within AO353_02145at 460.494 kb on + strand, within AO353_02145at 460.494 kb on + strand, within AO353_02145at 460.495 kb on - strand, within AO353_02145at 460.575 kb on + strand, within AO353_02145at 460.575 kb on + strand, within AO353_02145at 460.575 kb on + strand, within AO353_02145at 460.575 kb on + strand, within AO353_02145at 460.575 kb on + strand, within AO353_02145at 460.575 kb on + strand, within AO353_02145at 460.575 kb on + strand, within AO353_02145at 460.575 kb on + strand, within AO353_02145at 460.576 kb on - strand, within AO353_02145at 460.576 kb on - strand, within AO353_02145at 460.693 kb on + strandat 460.694 kb on - strandat 460.732 kb on + strandat 460.732 kb on + strandat 460.732 kb on + strandat 460.732 kb on + strandat 460.733 kb on - strandat 460.744 kb on + strandat 460.745 kb on - strandat 460.745 kb on - strandat 460.857 kb on + strandat 460.858 kb on - strandat 460.875 kb on + strandat 460.875 kb on + strandat 460.875 kb on + strandat 460.875 kb on + strandat 460.875 kb on + strandat 460.876 kb on - strandat 460.894 kb on + strandat 460.894 kb on + strandat 460.895 kb on - strandat 460.905 kb on - strandat 460.964 kb on + strandat 460.964 kb on + strandat 460.964 kb on + strandat 460.964 kb on + strandat 460.964 kb on + strandat 460.965 kb on - strandat 460.965 kb on - strandat 460.996 kb on + strandat 460.997 kb on - strandat 461.034 kb on + strandat 461.080 kb on + strand, within AO353_02150at 461.080 kb on + strand, within AO353_02150

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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458,886 - AO353_02135 0.23 -0.5
458,886 - AO353_02135 0.23 +0.3
458,984 + AO353_02135 0.34 -1.7
458,984 + AO353_02135 0.34 -0.1
458,984 + AO353_02135 0.34 +0.6
458,985 - AO353_02135 0.34 +1.1
458,985 - AO353_02135 0.34 -0.7
459,041 + AO353_02135 0.40 -0.0
459,041 + AO353_02135 0.40 -0.3
459,041 + AO353_02135 0.40 +0.2
459,041 + AO353_02135 0.40 +0.2
459,042 - AO353_02135 0.40 -0.6
459,042 - AO353_02135 0.40 +0.5
459,128 + AO353_02135 0.49 -0.6
459,201 - AO353_02135 0.57 +0.9
459,201 - AO353_02135 0.57 -1.5
459,201 - AO353_02135 0.57 -0.8
459,272 + AO353_02135 0.64 -0.5
459,272 + AO353_02135 0.64 -1.3
459,272 + AO353_02135 0.64 -0.2
459,272 + AO353_02135 0.64 +0.1
459,272 + AO353_02135 0.64 +0.3
459,272 + AO353_02135 0.64 -1.8
459,272 + AO353_02135 0.64 -0.1
459,272 + AO353_02135 0.64 +1.7
459,273 - AO353_02135 0.64 -0.2
459,273 - AO353_02135 0.64 -1.0
459,273 - AO353_02135 0.64 -0.9
459,273 - AO353_02135 0.64 -1.7
459,273 - AO353_02135 0.64 -0.0
459,273 - AO353_02135 0.64 +0.0
459,273 - AO353_02135 0.64 +0.3
459,273 - AO353_02135 0.64 -1.3
459,273 - AO353_02135 0.64 +1.1
459,273 - AO353_02135 0.64 -0.1
459,273 - AO353_02135 0.64 -1.3
459,273 - AO353_02135 0.64 -1.4
459,374 + AO353_02135 0.75 -0.6
459,374 + AO353_02135 0.75 +0.3
459,374 + AO353_02135 0.75 -1.1
459,554 + -1.5
459,554 + -0.9
459,554 + +0.0
459,555 - -0.1
459,576 + -1.7
459,576 + -1.1
459,576 + -0.7
459,576 + -1.3
459,576 + +0.5
459,576 + -1.4
459,576 + -0.5
459,577 - -1.3
459,577 - +0.5
459,577 - -1.8
459,577 - +0.6
459,577 - +1.9
459,577 - -0.9
459,577 - -1.8
459,577 - +0.1
459,577 - -0.4
459,577 - -0.8
459,577 - -1.5
459,577 - -0.6
459,577 - -0.3
459,578 + +0.2
459,578 + +0.6
459,578 + -1.8
459,578 + -0.3
459,578 + +0.7
459,578 + -1.5
459,578 + -0.4
459,578 + +1.1
459,578 + -1.8
459,578 + -0.8
459,578 + -0.6
459,578 + -0.9
459,578 + +0.3
459,578 + +0.3
459,579 - +0.6
459,579 - -1.4
459,579 - -0.1
459,579 - +1.4
459,715 + -0.3
459,778 - -0.4
459,821 - -0.9
459,824 - -0.2
459,824 - -0.7
459,824 - -0.4
459,951 + AO353_02140 0.24 -0.8
459,951 + AO353_02140 0.24 -1.4
459,951 + AO353_02140 0.24 -2.8
459,952 - AO353_02140 0.24 -2.4
459,952 - AO353_02140 0.24 -3.5
459,952 - AO353_02140 0.24 -1.7
459,953 + AO353_02140 0.24 -1.5
459,953 + AO353_02140 0.24 -1.9
459,953 + AO353_02140 0.24 -1.4
459,953 + AO353_02140 0.24 -2.7
459,953 + AO353_02140 0.24 -1.3
459,953 + AO353_02140 0.24 -2.7
459,953 + AO353_02140 0.24 -2.2
459,953 + AO353_02140 0.24 -2.3
459,953 + AO353_02140 0.24 -2.3
459,953 + AO353_02140 0.24 -1.7
459,953 + AO353_02140 0.24 -0.9
459,953 + AO353_02140 0.24 -1.3
459,954 - AO353_02140 0.25 -2.9
459,954 - AO353_02140 0.25 -2.8
459,954 - AO353_02140 0.25 -2.7
459,954 - AO353_02140 0.25 -0.9
459,954 - AO353_02140 0.25 -3.9
459,954 - AO353_02140 0.25 -0.7
459,954 - AO353_02140 0.25 -1.8
459,954 - AO353_02140 0.25 +0.3
459,954 - AO353_02140 0.25 -0.8
459,954 - AO353_02140 0.25 -0.7
459,954 - AO353_02140 0.25 +1.0
459,954 - AO353_02140 0.25 -3.5
459,954 - AO353_02140 0.25 -0.9
459,954 - AO353_02140 0.25 -1.8
459,957 + AO353_02140 0.26 -0.7
459,957 + AO353_02140 0.26 -1.4
459,957 + AO353_02140 0.26 -3.0
459,957 + AO353_02140 0.26 -2.2
459,957 + AO353_02140 0.26 -0.4
459,957 + AO353_02140 0.26 -1.3
459,957 + AO353_02140 0.26 -2.3
459,958 - AO353_02140 0.26 +0.3
459,958 - AO353_02140 0.26 -1.5
459,958 - AO353_02140 0.26 -1.3
459,958 - AO353_02140 0.26 -1.4
459,958 - AO353_02140 0.26 -2.2
459,958 - AO353_02140 0.26 -1.5
459,958 - AO353_02140 0.26 -1.4
460,008 - AO353_02140 0.43 -3.1
460,101 + AO353_02140 0.74 +0.5
460,101 + AO353_02140 0.74 -1.4
460,101 + AO353_02140 0.74 -2.3
460,101 + AO353_02140 0.74 -2.7
460,101 + AO353_02140 0.74 -0.9
460,102 - AO353_02140 0.74 -2.2
460,102 - AO353_02140 0.74 -0.1
460,102 - AO353_02140 0.74 -1.9
460,102 - AO353_02140 0.74 -3.0
460,102 - AO353_02140 0.74 -2.0
460,102 - AO353_02140 0.74 -1.3
460,102 - AO353_02140 0.74 -0.9
460,102 - AO353_02140 0.74 -1.3
460,161 + +0.3
460,161 + -0.8
460,161 + -2.3
460,371 + AO353_02145 0.34 -2.7
460,372 - AO353_02145 0.34 -0.1
460,372 - AO353_02145 0.34 -1.6
460,419 + AO353_02145 0.43 -1.8
460,419 + AO353_02145 0.43 -2.0
460,419 + AO353_02145 0.43 -0.3
460,420 - AO353_02145 0.43 -0.3
460,420 - AO353_02145 0.43 +0.2
460,420 - AO353_02145 0.43 -0.7
460,420 - AO353_02145 0.43 -0.0
460,494 + AO353_02145 0.57 -3.6
460,494 + AO353_02145 0.57 -1.7
460,495 - AO353_02145 0.58 -0.2
460,575 + AO353_02145 0.73 -2.2
460,575 + AO353_02145 0.73 -2.0
460,575 + AO353_02145 0.73 -3.0
460,575 + AO353_02145 0.73 -0.9
460,575 + AO353_02145 0.73 -2.7
460,575 + AO353_02145 0.73 -0.4
460,575 + AO353_02145 0.73 -1.3
460,575 + AO353_02145 0.73 -1.0
460,576 - AO353_02145 0.73 +0.1
460,576 - AO353_02145 0.73 -0.5
460,693 + -3.9
460,694 - +0.6
460,732 + -1.8
460,732 + -2.1
460,732 + -0.3
460,732 + +0.9
460,733 - +0.6
460,744 + +0.0
460,745 - -1.3
460,745 - -0.2
460,857 + -0.4
460,858 - +0.8
460,875 + +0.3
460,875 + +1.1
460,875 + +1.9
460,875 + +0.5
460,875 + +1.2
460,876 - -0.2
460,894 + +0.6
460,894 + +2.9
460,895 - -0.8
460,905 - +0.3
460,964 + -0.5
460,964 + +0.7
460,964 + -0.4
460,964 + +0.1
460,964 + +0.2
460,965 - +0.8
460,965 - +0.3
460,996 + -0.0
460,997 - +0.9
461,034 + -0.2
461,080 + AO353_02150 0.12 +0.2
461,080 + AO353_02150 0.12 +0.1

Or see this region's nucleotide sequence