Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02030 and AO353_02035 overlap by 1 nucleotides AO353_02035 and AO353_02040 are separated by 24 nucleotides AO353_02040 and AO353_02045 are separated by 174 nucleotides AO353_02045 and AO353_02050 are separated by 196 nucleotides
AO353_02030: AO353_02030 - hypothetical protein, at 433,860 to 434,039
_02030
AO353_02035: AO353_02035 - hypothetical protein, at 434,039 to 434,278
_02035
AO353_02040: AO353_02040 - integration host factor subunit beta, at 434,303 to 434,599
_02040
AO353_02045: AO353_02045 - hypothetical protein, at 434,774 to 435,055
_02045
AO353_02050: AO353_02050 - 30S ribosomal protein S1, at 435,252 to 436,943
_02050
Position (kb) 434
435 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 433.360 kb on + strand at 433.360 kb on + strand at 433.360 kb on + strand at 433.451 kb on + strand at 433.451 kb on + strand at 433.510 kb on + strand at 433.511 kb on - strand at 433.555 kb on + strand at 433.555 kb on + strand at 433.555 kb on + strand at 433.556 kb on - strand at 433.556 kb on - strand at 433.556 kb on - strand at 433.565 kb on - strand at 433.565 kb on - strand at 433.565 kb on - strand at 433.565 kb on - strand at 433.565 kb on - strand at 433.565 kb on - strand at 433.628 kb on + strand at 433.628 kb on + strand at 433.629 kb on - strand at 433.629 kb on - strand at 433.629 kb on - strand at 433.629 kb on - strand at 433.630 kb on + strand at 433.630 kb on + strand at 433.630 kb on + strand at 433.631 kb on - strand at 433.737 kb on + strand at 433.738 kb on - strand at 433.738 kb on - strand at 433.752 kb on + strand at 433.766 kb on + strand at 433.853 kb on + strand at 433.853 kb on + strand at 433.854 kb on - strand at 433.858 kb on + strand at 433.859 kb on - strand at 433.883 kb on + strand, within AO353_02030 at 433.883 kb on + strand, within AO353_02030 at 433.883 kb on + strand, within AO353_02030 at 433.883 kb on + strand, within AO353_02030 at 433.884 kb on - strand, within AO353_02030 at 433.884 kb on - strand, within AO353_02030 at 433.884 kb on - strand, within AO353_02030 at 433.884 kb on - strand, within AO353_02030 at 433.890 kb on - strand, within AO353_02030 at 433.890 kb on - strand, within AO353_02030 at 433.961 kb on + strand, within AO353_02030 at 434.005 kb on + strand, within AO353_02030 at 434.020 kb on + strand, within AO353_02030 at 434.021 kb on - strand, within AO353_02030 at 434.053 kb on + strand at 434.053 kb on + strand at 434.054 kb on - strand at 434.258 kb on + strand at 434.258 kb on + strand at 434.259 kb on - strand at 434.272 kb on + strand at 434.272 kb on + strand at 434.273 kb on - strand at 434.273 kb on - strand at 434.273 kb on - strand at 434.378 kb on - strand, within AO353_02040 at 434.414 kb on - strand, within AO353_02040 at 434.436 kb on + strand, within AO353_02040 at 434.441 kb on + strand, within AO353_02040 at 434.553 kb on - strand, within AO353_02040 at 434.553 kb on - strand, within AO353_02040 at 434.600 kb on - strand at 434.625 kb on + strand at 434.625 kb on + strand at 434.648 kb on - strand at 434.648 kb on - strand at 434.675 kb on + strand at 434.675 kb on + strand at 434.675 kb on + strand at 434.676 kb on - strand at 434.676 kb on - strand at 434.677 kb on + strand at 434.677 kb on + strand at 434.677 kb on + strand at 434.677 kb on + strand at 434.677 kb on + strand at 434.677 kb on + strand at 434.677 kb on + strand at 434.678 kb on - strand at 434.678 kb on - strand at 434.678 kb on - strand at 434.678 kb on - strand at 434.678 kb on - strand at 434.678 kb on - strand at 434.679 kb on + strand at 434.679 kb on + strand at 434.679 kb on + strand at 434.679 kb on + strand at 434.679 kb on + strand at 434.679 kb on + strand at 434.680 kb on - strand at 434.680 kb on - strand at 434.680 kb on - strand at 434.680 kb on - strand at 434.680 kb on - strand at 434.680 kb on - strand at 434.680 kb on - strand at 434.680 kb on - strand at 434.687 kb on + strand at 434.687 kb on + strand at 434.693 kb on + strand at 434.693 kb on + strand at 434.693 kb on + strand at 434.693 kb on + strand at 434.831 kb on + strand, within AO353_02045 at 434.831 kb on + strand, within AO353_02045 at 434.832 kb on - strand, within AO353_02045 at 434.832 kb on - strand, within AO353_02045 at 434.832 kb on - strand, within AO353_02045 at 434.832 kb on - strand, within AO353_02045 at 434.835 kb on + strand, within AO353_02045 at 434.835 kb on + strand, within AO353_02045 at 434.835 kb on + strand, within AO353_02045 at 434.835 kb on + strand, within AO353_02045 at 434.835 kb on + strand, within AO353_02045 at 434.836 kb on - strand, within AO353_02045 at 434.836 kb on - strand, within AO353_02045 at 434.836 kb on - strand, within AO353_02045 at 434.836 kb on - strand, within AO353_02045 at 434.854 kb on + strand, within AO353_02045 at 434.854 kb on + strand, within AO353_02045 at 434.855 kb on - strand, within AO353_02045 at 434.883 kb on + strand, within AO353_02045 at 434.883 kb on + strand, within AO353_02045 at 434.919 kb on + strand, within AO353_02045 at 434.919 kb on + strand, within AO353_02045 at 434.919 kb on + strand, within AO353_02045 at 434.919 kb on + strand, within AO353_02045 at 434.920 kb on - strand, within AO353_02045 at 434.920 kb on - strand, within AO353_02045 at 434.920 kb on - strand, within AO353_02045 at 434.926 kb on + strand, within AO353_02045 at 434.927 kb on - strand, within AO353_02045 at 434.927 kb on - strand, within AO353_02045 at 435.007 kb on + strand, within AO353_02045 at 435.007 kb on + strand, within AO353_02045 at 435.007 kb on + strand, within AO353_02045 at 435.007 kb on + strand, within AO353_02045 at 435.007 kb on + strand, within AO353_02045 at 435.008 kb on - strand, within AO353_02045 at 435.008 kb on - strand, within AO353_02045 at 435.008 kb on - strand, within AO353_02045 at 435.105 kb on + strand at 435.105 kb on + strand at 435.106 kb on - strand at 435.106 kb on - strand at 435.106 kb on - strand at 435.106 kb on - strand at 435.112 kb on + strand at 435.112 kb on + strand at 435.122 kb on + strand at 435.123 kb on - strand at 435.133 kb on + strand at 435.133 kb on + strand at 435.133 kb on + strand at 435.134 kb on - strand at 435.134 kb on - strand at 435.134 kb on - strand at 435.134 kb on - strand at 435.157 kb on - strand at 435.157 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 433,360 + -0.1 433,360 + -1.3 433,360 + +0.0 433,451 + +1.4 433,451 + -0.1 433,510 + -0.4 433,511 - -0.3 433,555 + -0.1 433,555 + +0.8 433,555 + +0.7 433,556 - -1.8 433,556 - +0.6 433,556 - +1.0 433,565 - -2.0 433,565 - +0.4 433,565 - -1.3 433,565 - +0.4 433,565 - -1.6 433,565 - +1.1 433,628 + +0.9 433,628 + +2.2 433,629 - -0.9 433,629 - -0.2 433,629 - +0.5 433,629 - +0.7 433,630 + +0.6 433,630 + -0.2 433,630 + -0.3 433,631 - +0.3 433,737 + +0.3 433,738 - -0.6 433,738 - +1.2 433,752 + +1.3 433,766 + -0.6 433,853 + -0.3 433,853 + -1.0 433,854 - +0.9 433,858 + -0.2 433,859 - -0.9 433,883 + AO353_02030 0.13 -0.2 433,883 + AO353_02030 0.13 -0.4 433,883 + AO353_02030 0.13 -1.0 433,883 + AO353_02030 0.13 -0.3 433,884 - AO353_02030 0.13 +0.3 433,884 - AO353_02030 0.13 -0.2 433,884 - AO353_02030 0.13 -1.4 433,884 - AO353_02030 0.13 -0.4 433,890 - AO353_02030 0.17 +0.4 433,890 - AO353_02030 0.17 -1.8 433,961 + AO353_02030 0.56 -0.6 434,005 + AO353_02030 0.81 -0.4 434,020 + AO353_02030 0.89 +0.6 434,021 - AO353_02030 0.89 +1.9 434,053 + +0.8 434,053 + +0.6 434,054 - +0.3 434,258 + -1.0 434,258 + +0.6 434,259 - +0.5 434,272 + +1.6 434,272 + -0.7 434,273 - -0.8 434,273 - -1.0 434,273 - +1.3 434,378 - AO353_02040 0.25 -1.8 434,414 - AO353_02040 0.37 -1.6 434,436 + AO353_02040 0.45 +0.0 434,441 + AO353_02040 0.46 +2.2 434,553 - AO353_02040 0.84 -1.3 434,553 - AO353_02040 0.84 -1.7 434,600 - -1.4 434,625 + +1.5 434,625 + +0.5 434,648 - -1.2 434,648 - -1.1 434,675 + +0.4 434,675 + +1.7 434,675 + +0.3 434,676 - -1.4 434,676 - +0.5 434,677 + -1.1 434,677 + -1.2 434,677 + +0.3 434,677 + -0.8 434,677 + +1.0 434,677 + +0.4 434,677 + -0.3 434,678 - -0.7 434,678 - +0.4 434,678 - +0.0 434,678 - +0.4 434,678 - -0.4 434,678 - +0.8 434,679 + -0.2 434,679 + +0.3 434,679 + -0.7 434,679 + -0.1 434,679 + +0.2 434,679 + -0.4 434,680 - +0.6 434,680 - -1.1 434,680 - +0.1 434,680 - +0.6 434,680 - +0.4 434,680 - +1.2 434,680 - +0.5 434,680 - +0.5 434,687 + -0.3 434,687 + +0.2 434,693 + -0.9 434,693 + -1.3 434,693 + -0.8 434,693 + -1.0 434,831 + AO353_02045 0.20 +0.6 434,831 + AO353_02045 0.20 +0.0 434,832 - AO353_02045 0.21 -0.6 434,832 - AO353_02045 0.21 +1.3 434,832 - AO353_02045 0.21 +0.2 434,832 - AO353_02045 0.21 -1.0 434,835 + AO353_02045 0.22 +0.9 434,835 + AO353_02045 0.22 -0.4 434,835 + AO353_02045 0.22 +0.1 434,835 + AO353_02045 0.22 +0.3 434,835 + AO353_02045 0.22 -0.1 434,836 - AO353_02045 0.22 +0.8 434,836 - AO353_02045 0.22 -0.4 434,836 - AO353_02045 0.22 +0.0 434,836 - AO353_02045 0.22 -0.5 434,854 + AO353_02045 0.28 +0.5 434,854 + AO353_02045 0.28 +0.4 434,855 - AO353_02045 0.29 -0.3 434,883 + AO353_02045 0.39 -0.1 434,883 + AO353_02045 0.39 +0.1 434,919 + AO353_02045 0.51 -0.2 434,919 + AO353_02045 0.51 -0.8 434,919 + AO353_02045 0.51 +2.9 434,919 + AO353_02045 0.51 -1.6 434,920 - AO353_02045 0.52 +0.0 434,920 - AO353_02045 0.52 +0.9 434,920 - AO353_02045 0.52 +1.2 434,926 + AO353_02045 0.54 -0.9 434,927 - AO353_02045 0.54 -1.9 434,927 - AO353_02045 0.54 +0.5 435,007 + AO353_02045 0.83 -0.2 435,007 + AO353_02045 0.83 +0.4 435,007 + AO353_02045 0.83 +0.2 435,007 + AO353_02045 0.83 -0.2 435,007 + AO353_02045 0.83 +1.1 435,008 - AO353_02045 0.83 +1.9 435,008 - AO353_02045 0.83 -0.5 435,008 - AO353_02045 0.83 +0.8 435,105 + -0.1 435,105 + -0.1 435,106 - +1.4 435,106 - +0.6 435,106 - -0.2 435,106 - +0.4 435,112 + -0.8 435,112 + -0.3 435,122 + +0.6 435,123 - +1.9 435,133 + -0.3 435,133 + +0.9 435,133 + -1.0 435,134 - -0.8 435,134 - +2.2 435,134 - +0.9 435,134 - -0.9 435,157 - +0.2 435,157 - +0.9
Or see this region's nucleotide sequence