Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01965

Experiment: D-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_01955 and AO353_01960 are separated by 62 nucleotidesAO353_01960 and AO353_01965 are separated by 226 nucleotidesAO353_01965 and AO353_01970 are separated by 114 nucleotides AO353_01955: AO353_01955 - thiosulfate transporter subunit, at 413,705 to 414,703 _01955 AO353_01960: AO353_01960 - hypothetical protein, at 414,766 to 415,386 _01960 AO353_01965: AO353_01965 - competence protein ComEA, at 415,613 to 415,948 _01965 AO353_01970: AO353_01970 - hypothetical protein, at 416,063 to 418,057 _01970 Position (kb) 415 416Strain fitness (log2 ratio) -2 -1 0 1 2at 414.615 kb on + strandat 414.689 kb on + strandat 414.689 kb on + strandat 414.689 kb on + strandat 414.689 kb on + strandat 414.690 kb on - strandat 414.701 kb on + strandat 414.702 kb on - strandat 414.762 kb on + strandat 414.950 kb on + strand, within AO353_01960at 414.950 kb on + strand, within AO353_01960at 414.950 kb on + strand, within AO353_01960at 414.950 kb on + strand, within AO353_01960at 414.950 kb on + strand, within AO353_01960at 414.950 kb on + strand, within AO353_01960at 414.951 kb on - strand, within AO353_01960at 414.951 kb on - strand, within AO353_01960at 414.951 kb on - strand, within AO353_01960at 414.951 kb on - strand, within AO353_01960at 414.951 kb on - strand, within AO353_01960at 415.120 kb on + strand, within AO353_01960at 415.121 kb on - strand, within AO353_01960at 415.139 kb on + strand, within AO353_01960at 415.139 kb on + strand, within AO353_01960at 415.139 kb on + strand, within AO353_01960at 415.140 kb on - strand, within AO353_01960at 415.140 kb on - strand, within AO353_01960at 415.140 kb on - strand, within AO353_01960at 415.140 kb on - strand, within AO353_01960at 415.140 kb on - strand, within AO353_01960at 415.140 kb on - strand, within AO353_01960at 415.140 kb on - strand, within AO353_01960at 415.140 kb on - strand, within AO353_01960at 415.140 kb on - strand, within AO353_01960at 415.140 kb on - strand, within AO353_01960at 415.140 kb on - strand, within AO353_01960at 415.369 kb on + strandat 415.435 kb on + strandat 415.436 kb on - strandat 415.466 kb on + strandat 415.467 kb on - strandat 415.467 kb on - strandat 415.555 kb on + strandat 415.555 kb on + strandat 415.555 kb on + strandat 415.555 kb on + strandat 415.556 kb on - strandat 415.556 kb on - strandat 415.708 kb on + strand, within AO353_01965at 415.708 kb on + strand, within AO353_01965at 415.709 kb on - strand, within AO353_01965at 415.709 kb on - strand, within AO353_01965at 415.836 kb on - strand, within AO353_01965at 415.853 kb on + strand, within AO353_01965at 415.894 kb on + strand, within AO353_01965at 415.894 kb on + strand, within AO353_01965at 415.894 kb on + strand, within AO353_01965at 415.894 kb on + strand, within AO353_01965at 415.894 kb on + strand, within AO353_01965at 415.894 kb on + strand, within AO353_01965at 415.894 kb on + strand, within AO353_01965at 415.895 kb on - strand, within AO353_01965at 415.895 kb on - strand, within AO353_01965at 415.930 kb on - strandat 415.935 kb on + strandat 415.936 kb on - strandat 415.942 kb on + strandat 415.942 kb on + strandat 415.942 kb on + strandat 415.942 kb on + strandat 415.948 kb on + strandat 415.949 kb on - strandat 415.949 kb on - strandat 415.949 kb on - strandat 415.971 kb on + strandat 416.010 kb on + strandat 416.039 kb on + strandat 416.040 kb on - strandat 416.088 kb on + strandat 416.088 kb on + strandat 416.089 kb on - strandat 416.089 kb on - strandat 416.121 kb on + strandat 416.163 kb on + strandat 416.163 kb on + strandat 416.163 kb on + strandat 416.164 kb on - strandat 416.164 kb on - strandat 416.164 kb on - strandat 416.291 kb on + strand, within AO353_01970at 416.301 kb on + strand, within AO353_01970at 416.301 kb on + strand, within AO353_01970at 416.302 kb on - strand, within AO353_01970at 416.521 kb on - strand, within AO353_01970at 416.575 kb on + strand, within AO353_01970at 416.661 kb on - strand, within AO353_01970at 416.661 kb on - strand, within AO353_01970at 416.661 kb on - strand, within AO353_01970at 416.661 kb on - strand, within AO353_01970at 416.704 kb on + strand, within AO353_01970at 416.704 kb on + strand, within AO353_01970at 416.704 kb on + strand, within AO353_01970at 416.704 kb on + strand, within AO353_01970at 416.705 kb on - strand, within AO353_01970at 416.899 kb on + strand, within AO353_01970at 416.899 kb on + strand, within AO353_01970at 416.899 kb on + strand, within AO353_01970at 416.899 kb on + strand, within AO353_01970at 416.900 kb on - strand, within AO353_01970at 416.900 kb on - strand, within AO353_01970at 416.900 kb on - strand, within AO353_01970at 416.901 kb on + strand, within AO353_01970at 416.902 kb on - strand, within AO353_01970at 416.902 kb on - strand, within AO353_01970at 416.902 kb on - strand, within AO353_01970at 416.902 kb on - strand, within AO353_01970at 416.945 kb on + strand, within AO353_01970at 416.946 kb on - strand, within AO353_01970

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
remove
414,615 + -0.2
414,689 + +1.7
414,689 + +0.2
414,689 + +0.4
414,689 + -0.8
414,690 - +0.3
414,701 + -0.3
414,702 - +0.7
414,762 + +0.3
414,950 + AO353_01960 0.30 -0.6
414,950 + AO353_01960 0.30 -0.8
414,950 + AO353_01960 0.30 +1.9
414,950 + AO353_01960 0.30 -0.6
414,950 + AO353_01960 0.30 +0.2
414,950 + AO353_01960 0.30 +0.1
414,951 - AO353_01960 0.30 -0.5
414,951 - AO353_01960 0.30 +1.3
414,951 - AO353_01960 0.30 -1.7
414,951 - AO353_01960 0.30 -0.1
414,951 - AO353_01960 0.30 +0.3
415,120 + AO353_01960 0.57 +0.5
415,121 - AO353_01960 0.57 +0.1
415,139 + AO353_01960 0.60 +0.1
415,139 + AO353_01960 0.60 -0.3
415,139 + AO353_01960 0.60 +0.9
415,140 - AO353_01960 0.60 +0.3
415,140 - AO353_01960 0.60 +0.2
415,140 - AO353_01960 0.60 -1.1
415,140 - AO353_01960 0.60 +0.4
415,140 - AO353_01960 0.60 -0.3
415,140 - AO353_01960 0.60 -1.9
415,140 - AO353_01960 0.60 -0.4
415,140 - AO353_01960 0.60 +0.8
415,140 - AO353_01960 0.60 -0.8
415,140 - AO353_01960 0.60 -1.4
415,140 - AO353_01960 0.60 -1.0
415,369 + -0.4
415,435 + +1.6
415,436 - +0.4
415,466 + -1.1
415,467 - +0.2
415,467 - -1.9
415,555 + +0.5
415,555 + -1.4
415,555 + +0.7
415,555 + -0.2
415,556 - +1.3
415,556 - +0.0
415,708 + AO353_01965 0.28 +1.6
415,708 + AO353_01965 0.28 +1.3
415,709 - AO353_01965 0.29 +0.8
415,709 - AO353_01965 0.29 -0.1
415,836 - AO353_01965 0.66 +0.1
415,853 + AO353_01965 0.71 -0.0
415,894 + AO353_01965 0.84 -0.4
415,894 + AO353_01965 0.84 +0.7
415,894 + AO353_01965 0.84 +0.8
415,894 + AO353_01965 0.84 -0.7
415,894 + AO353_01965 0.84 +0.4
415,894 + AO353_01965 0.84 -0.3
415,894 + AO353_01965 0.84 +0.3
415,895 - AO353_01965 0.84 +1.3
415,895 - AO353_01965 0.84 -0.7
415,930 - -0.9
415,935 + -0.7
415,936 - -0.2
415,942 + +0.1
415,942 + -0.0
415,942 + +0.3
415,942 + -0.2
415,948 + -1.6
415,949 - +1.2
415,949 - +1.1
415,949 - +0.0
415,971 + -0.9
416,010 + -1.4
416,039 + -0.1
416,040 - -0.6
416,088 + +0.6
416,088 + -0.1
416,089 - -0.3
416,089 - -0.1
416,121 + +0.5
416,163 + +0.6
416,163 + +0.6
416,163 + -0.7
416,164 - -1.3
416,164 - -0.3
416,164 - -0.2
416,291 + AO353_01970 0.11 -0.6
416,301 + AO353_01970 0.12 +0.6
416,301 + AO353_01970 0.12 +0.9
416,302 - AO353_01970 0.12 +0.3
416,521 - AO353_01970 0.23 +1.4
416,575 + AO353_01970 0.26 +0.3
416,661 - AO353_01970 0.30 +1.3
416,661 - AO353_01970 0.30 +0.2
416,661 - AO353_01970 0.30 +1.1
416,661 - AO353_01970 0.30 +0.8
416,704 + AO353_01970 0.32 -0.9
416,704 + AO353_01970 0.32 +1.0
416,704 + AO353_01970 0.32 +0.4
416,704 + AO353_01970 0.32 -0.6
416,705 - AO353_01970 0.32 -1.2
416,899 + AO353_01970 0.42 +1.1
416,899 + AO353_01970 0.42 -0.2
416,899 + AO353_01970 0.42 +0.3
416,899 + AO353_01970 0.42 -0.2
416,900 - AO353_01970 0.42 +0.6
416,900 - AO353_01970 0.42 -0.0
416,900 - AO353_01970 0.42 +0.9
416,901 + AO353_01970 0.42 -1.1
416,902 - AO353_01970 0.42 +0.5
416,902 - AO353_01970 0.42 +0.1
416,902 - AO353_01970 0.42 +0.2
416,902 - AO353_01970 0.42 -0.3
416,945 + AO353_01970 0.44 -1.1
416,946 - AO353_01970 0.44 +0.0

Or see this region's nucleotide sequence