Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01900 and AO353_01905 are separated by 132 nucleotides AO353_01905 and AO353_01910 are separated by 72 nucleotides
AO353_01900: AO353_01900 - hypothetical protein, at 401,498 to 402,412
_01900
AO353_01905: AO353_01905 - TetR family transcriptional regulator, at 402,545 to 403,150
_01905
AO353_01910: AO353_01910 - hypothetical protein, at 403,223 to 404,290
_01910
Position (kb) 402
403
404 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 401.566 kb on + strand at 401.567 kb on - strand at 401.567 kb on - strand at 401.603 kb on - strand, within AO353_01900 at 401.736 kb on + strand, within AO353_01900 at 401.736 kb on + strand, within AO353_01900 at 401.736 kb on + strand, within AO353_01900 at 401.736 kb on + strand, within AO353_01900 at 401.736 kb on + strand, within AO353_01900 at 401.736 kb on + strand, within AO353_01900 at 401.736 kb on + strand, within AO353_01900 at 401.736 kb on + strand, within AO353_01900 at 401.736 kb on + strand, within AO353_01900 at 401.737 kb on - strand, within AO353_01900 at 401.737 kb on - strand, within AO353_01900 at 401.737 kb on - strand, within AO353_01900 at 401.737 kb on - strand, within AO353_01900 at 401.737 kb on - strand, within AO353_01900 at 401.737 kb on - strand, within AO353_01900 at 401.737 kb on - strand, within AO353_01900 at 401.847 kb on + strand, within AO353_01900 at 401.847 kb on + strand, within AO353_01900 at 401.959 kb on + strand, within AO353_01900 at 401.960 kb on - strand, within AO353_01900 at 401.960 kb on - strand, within AO353_01900 at 402.000 kb on + strand, within AO353_01900 at 402.000 kb on + strand, within AO353_01900 at 402.000 kb on + strand, within AO353_01900 at 402.001 kb on - strand, within AO353_01900 at 402.001 kb on - strand, within AO353_01900 at 402.123 kb on + strand, within AO353_01900 at 402.123 kb on + strand, within AO353_01900 at 402.123 kb on + strand, within AO353_01900 at 402.123 kb on + strand, within AO353_01900 at 402.124 kb on - strand, within AO353_01900 at 402.124 kb on - strand at 402.124 kb on - strand, within AO353_01900 at 402.124 kb on - strand, within AO353_01900 at 402.366 kb on - strand at 402.430 kb on + strand at 402.430 kb on + strand at 402.430 kb on + strand at 402.430 kb on + strand at 402.430 kb on + strand at 402.431 kb on - strand at 402.431 kb on - strand at 402.431 kb on - strand at 402.431 kb on - strand at 402.431 kb on - strand at 402.431 kb on - strand at 402.431 kb on - strand at 402.432 kb on + strand at 402.432 kb on + strand at 402.432 kb on + strand at 402.433 kb on - strand at 402.433 kb on - strand at 402.433 kb on - strand at 402.433 kb on - strand at 402.433 kb on - strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.451 kb on - strand at 402.451 kb on - strand at 402.502 kb on + strand at 402.503 kb on - strand at 402.545 kb on - strand at 402.568 kb on + strand at 402.568 kb on + strand at 402.677 kb on + strand, within AO353_01905 at 402.677 kb on + strand, within AO353_01905 at 402.677 kb on + strand, within AO353_01905 at 402.678 kb on - strand, within AO353_01905 at 402.678 kb on - strand, within AO353_01905 at 402.678 kb on - strand, within AO353_01905 at 402.678 kb on - strand, within AO353_01905 at 402.678 kb on - strand, within AO353_01905 at 402.680 kb on + strand, within AO353_01905 at 402.680 kb on + strand, within AO353_01905 at 402.680 kb on + strand, within AO353_01905 at 402.681 kb on - strand, within AO353_01905 at 402.681 kb on - strand, within AO353_01905 at 402.681 kb on - strand, within AO353_01905 at 402.683 kb on + strand, within AO353_01905 at 402.683 kb on + strand, within AO353_01905 at 402.683 kb on + strand, within AO353_01905 at 402.683 kb on + strand, within AO353_01905 at 402.683 kb on + strand, within AO353_01905 at 402.684 kb on - strand, within AO353_01905 at 402.684 kb on - strand, within AO353_01905 at 402.684 kb on - strand, within AO353_01905 at 402.684 kb on - strand, within AO353_01905 at 402.801 kb on - strand, within AO353_01905 at 402.801 kb on - strand, within AO353_01905 at 403.028 kb on + strand, within AO353_01905 at 403.028 kb on + strand, within AO353_01905 at 403.029 kb on - strand, within AO353_01905 at 403.029 kb on - strand, within AO353_01905 at 403.029 kb on - strand, within AO353_01905 at 403.091 kb on + strand at 403.092 kb on - strand at 403.152 kb on + strand at 403.152 kb on + strand at 403.152 kb on + strand at 403.152 kb on + strand at 403.153 kb on - strand at 403.262 kb on + strand at 403.262 kb on + strand at 403.337 kb on - strand, within AO353_01910 at 403.401 kb on - strand, within AO353_01910 at 403.401 kb on - strand, within AO353_01910 at 403.401 kb on - strand, within AO353_01910 at 403.404 kb on + strand, within AO353_01910 at 403.404 kb on + strand, within AO353_01910 at 403.405 kb on - strand, within AO353_01910 at 403.405 kb on - strand, within AO353_01910 at 403.405 kb on - strand, within AO353_01910 at 403.405 kb on - strand, within AO353_01910 at 403.436 kb on - strand, within AO353_01910 at 403.482 kb on + strand, within AO353_01910 at 403.483 kb on - strand, within AO353_01910 at 403.483 kb on - strand, within AO353_01910 at 403.483 kb on - strand, within AO353_01910 at 403.483 kb on - strand, within AO353_01910 at 403.483 kb on - strand, within AO353_01910 at 403.548 kb on + strand, within AO353_01910 at 403.548 kb on + strand, within AO353_01910 at 403.604 kb on + strand, within AO353_01910 at 403.605 kb on - strand, within AO353_01910 at 403.612 kb on + strand, within AO353_01910 at 403.612 kb on + strand, within AO353_01910 at 403.612 kb on + strand, within AO353_01910 at 403.612 kb on + strand, within AO353_01910 at 403.612 kb on + strand, within AO353_01910 at 403.612 kb on + strand, within AO353_01910 at 403.612 kb on + strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.615 kb on - strand, within AO353_01910 at 403.722 kb on + strand, within AO353_01910 at 403.723 kb on - strand, within AO353_01910 at 403.723 kb on - strand, within AO353_01910 at 403.723 kb on - strand, within AO353_01910 at 403.723 kb on - strand, within AO353_01910 at 403.723 kb on - strand, within AO353_01910 at 403.723 kb on - strand, within AO353_01910 at 403.767 kb on - strand, within AO353_01910 at 403.767 kb on - strand, within AO353_01910 at 403.801 kb on + strand, within AO353_01910 at 403.801 kb on + strand, within AO353_01910 at 403.801 kb on + strand, within AO353_01910 at 404.021 kb on + strand, within AO353_01910 at 404.021 kb on + strand, within AO353_01910 at 404.021 kb on + strand, within AO353_01910 at 404.022 kb on - strand, within AO353_01910 at 404.037 kb on + strand, within AO353_01910 at 404.048 kb on + strand, within AO353_01910 at 404.049 kb on - strand, within AO353_01910 at 404.049 kb on - strand, within AO353_01910 at 404.138 kb on + strand, within AO353_01910 at 404.138 kb on + strand, within AO353_01910 at 404.139 kb on - strand, within AO353_01910
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 401,566 + +0.0 401,567 - +1.2 401,567 - +0.2 401,603 - AO353_01900 0.11 +1.2 401,736 + AO353_01900 0.26 +0.7 401,736 + AO353_01900 0.26 -0.0 401,736 + AO353_01900 0.26 +0.6 401,736 + AO353_01900 0.26 +0.4 401,736 + AO353_01900 0.26 +0.1 401,736 + AO353_01900 0.26 +0.7 401,736 + AO353_01900 0.26 +0.4 401,736 + AO353_01900 0.26 +0.1 401,736 + AO353_01900 0.26 +0.7 401,737 - AO353_01900 0.26 +0.3 401,737 - AO353_01900 0.26 +0.5 401,737 - AO353_01900 0.26 -0.3 401,737 - AO353_01900 0.26 -0.2 401,737 - AO353_01900 0.26 -1.5 401,737 - AO353_01900 0.26 -0.2 401,737 - AO353_01900 0.26 -0.3 401,847 + AO353_01900 0.38 +0.0 401,847 + AO353_01900 0.38 -0.1 401,959 + AO353_01900 0.50 -0.3 401,960 - AO353_01900 0.50 -1.2 401,960 - AO353_01900 0.50 -0.7 402,000 + AO353_01900 0.55 +2.5 402,000 + AO353_01900 0.55 +0.2 402,000 + AO353_01900 0.55 -0.2 402,001 - AO353_01900 0.55 +0.2 402,001 - AO353_01900 0.55 -0.0 402,123 + AO353_01900 0.68 +1.7 402,123 + AO353_01900 0.68 -0.4 402,123 + AO353_01900 0.68 +0.3 402,123 + AO353_01900 0.68 +0.7 402,124 - AO353_01900 0.68 -0.4 402,124 - -0.1 402,124 - AO353_01900 0.68 -0.4 402,124 - AO353_01900 0.68 +0.2 402,366 - +0.2 402,430 + -0.7 402,430 + +0.7 402,430 + -1.7 402,430 + -1.3 402,430 + -0.0 402,431 - +0.1 402,431 - +0.1 402,431 - -1.3 402,431 - -0.4 402,431 - +1.2 402,431 - -0.1 402,431 - -0.5 402,432 + -0.9 402,432 + +0.6 402,432 + +0.1 402,433 - -0.1 402,433 - -1.0 402,433 - +0.6 402,433 - +0.2 402,433 - +0.5 402,434 + +0.7 402,434 + +1.6 402,434 + +0.0 402,434 + -1.4 402,434 + +1.0 402,434 + -1.0 402,434 + -1.8 402,434 + -0.9 402,434 + +0.5 402,434 + -0.2 402,434 + -0.3 402,434 + +0.9 402,434 + +1.4 402,434 + +1.5 402,434 + +0.4 402,434 + +1.6 402,435 - +0.4 402,435 - +1.3 402,435 - -0.0 402,435 - +0.6 402,435 - +2.3 402,435 - -0.0 402,435 - +0.2 402,435 - +3.5 402,435 - +0.8 402,435 - -1.6 402,435 - -0.9 402,435 - -0.1 402,435 - +0.1 402,435 - +0.1 402,435 - +1.3 402,435 - +0.1 402,435 - -0.3 402,435 - +0.7 402,435 - -0.4 402,451 - -0.0 402,451 - +0.1 402,502 + +0.3 402,503 - +0.4 402,545 - -0.3 402,568 + -0.4 402,568 + -0.1 402,677 + AO353_01905 0.22 -0.9 402,677 + AO353_01905 0.22 +0.9 402,677 + AO353_01905 0.22 -1.1 402,678 - AO353_01905 0.22 -0.2 402,678 - AO353_01905 0.22 +1.6 402,678 - AO353_01905 0.22 +0.5 402,678 - AO353_01905 0.22 +2.3 402,678 - AO353_01905 0.22 -0.7 402,680 + AO353_01905 0.22 -1.1 402,680 + AO353_01905 0.22 +1.2 402,680 + AO353_01905 0.22 -1.3 402,681 - AO353_01905 0.22 -0.4 402,681 - AO353_01905 0.22 +0.6 402,681 - AO353_01905 0.22 +1.1 402,683 + AO353_01905 0.23 +1.6 402,683 + AO353_01905 0.23 +0.4 402,683 + AO353_01905 0.23 +0.5 402,683 + AO353_01905 0.23 -0.9 402,683 + AO353_01905 0.23 +0.2 402,684 - AO353_01905 0.23 +1.3 402,684 - AO353_01905 0.23 +0.6 402,684 - AO353_01905 0.23 +0.1 402,684 - AO353_01905 0.23 +1.2 402,801 - AO353_01905 0.42 +0.7 402,801 - AO353_01905 0.42 +0.6 403,028 + AO353_01905 0.80 +0.7 403,028 + AO353_01905 0.80 -0.5 403,029 - AO353_01905 0.80 +0.3 403,029 - AO353_01905 0.80 +2.1 403,029 - AO353_01905 0.80 +0.7 403,091 + +1.2 403,092 - +0.5 403,152 + +0.3 403,152 + +0.6 403,152 + +1.4 403,152 + -1.2 403,153 - +0.0 403,262 + -0.5 403,262 + +0.7 403,337 - AO353_01910 0.11 -0.6 403,401 - AO353_01910 0.17 +0.6 403,401 - AO353_01910 0.17 -0.1 403,401 - AO353_01910 0.17 -1.7 403,404 + AO353_01910 0.17 +1.1 403,404 + AO353_01910 0.17 -0.5 403,405 - AO353_01910 0.17 -2.3 403,405 - AO353_01910 0.17 -0.2 403,405 - AO353_01910 0.17 +0.9 403,405 - AO353_01910 0.17 -0.5 403,436 - AO353_01910 0.20 +2.4 403,482 + AO353_01910 0.24 +0.4 403,483 - AO353_01910 0.24 -2.3 403,483 - AO353_01910 0.24 +0.3 403,483 - AO353_01910 0.24 -0.4 403,483 - AO353_01910 0.24 +0.7 403,483 - AO353_01910 0.24 -0.0 403,548 + AO353_01910 0.30 +2.2 403,548 + AO353_01910 0.30 -0.3 403,604 + AO353_01910 0.36 -1.1 403,605 - AO353_01910 0.36 +0.5 403,612 + AO353_01910 0.36 -0.1 403,612 + AO353_01910 0.36 +0.2 403,612 + AO353_01910 0.36 +1.0 403,612 + AO353_01910 0.36 -0.5 403,612 + AO353_01910 0.36 -0.3 403,612 + AO353_01910 0.36 +0.5 403,612 + AO353_01910 0.36 +0.2 403,613 - AO353_01910 0.37 -1.0 403,613 - AO353_01910 0.37 +0.2 403,613 - AO353_01910 0.37 +0.4 403,613 - AO353_01910 0.37 +0.5 403,613 - AO353_01910 0.37 +0.3 403,613 - AO353_01910 0.37 -0.9 403,613 - AO353_01910 0.37 -1.0 403,613 - AO353_01910 0.37 +0.9 403,613 - AO353_01910 0.37 +0.8 403,613 - AO353_01910 0.37 -0.8 403,613 - AO353_01910 0.37 -0.6 403,613 - AO353_01910 0.37 -2.3 403,615 - AO353_01910 0.37 -1.5 403,722 + AO353_01910 0.47 -1.0 403,723 - AO353_01910 0.47 +0.2 403,723 - AO353_01910 0.47 +1.3 403,723 - AO353_01910 0.47 +1.4 403,723 - AO353_01910 0.47 +1.5 403,723 - AO353_01910 0.47 +0.1 403,723 - AO353_01910 0.47 +0.3 403,767 - AO353_01910 0.51 +0.6 403,767 - AO353_01910 0.51 +0.1 403,801 + AO353_01910 0.54 -0.7 403,801 + AO353_01910 0.54 -2.4 403,801 + AO353_01910 0.54 +0.0 404,021 + AO353_01910 0.75 +0.2 404,021 + AO353_01910 0.75 -0.4 404,021 + AO353_01910 0.75 +0.7 404,022 - AO353_01910 0.75 -1.7 404,037 + AO353_01910 0.76 -0.5 404,048 + AO353_01910 0.77 +0.6 404,049 - AO353_01910 0.77 +0.3 404,049 - AO353_01910 0.77 +0.3 404,138 + AO353_01910 0.86 -1.2 404,138 + AO353_01910 0.86 +0.5 404,139 - AO353_01910 0.86 -1.3
Or see this region's nucleotide sequence