Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00605 and AO353_00610 overlap by 1 nucleotides AO353_00610 and AO353_00615 are separated by 5 nucleotides AO353_00615 and AO353_00620 overlap by 4 nucleotides
AO353_00605: AO353_00605 - cytochrome C oxidase Cbb3, at 128,140 to 129,582
_00605
AO353_00610: AO353_00610 - cytochrome C oxidase Cbb3, at 129,582 to 130,190
_00610
AO353_00615: AO353_00615 - cytochrome oxidase, at 130,196 to 130,381
_00615
AO353_00620: AO353_00620 - cytochrome C oxidase Cbb3, at 130,378 to 131,355
_00620
Position (kb) 129
130
131 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 128.614 kb on + strand, within AO353_00605 at 128.614 kb on + strand, within AO353_00605 at 128.615 kb on - strand, within AO353_00605 at 128.615 kb on - strand, within AO353_00605 at 128.632 kb on + strand, within AO353_00605 at 128.710 kb on + strand, within AO353_00605 at 128.711 kb on - strand, within AO353_00605 at 128.711 kb on - strand, within AO353_00605 at 128.810 kb on - strand, within AO353_00605 at 128.812 kb on + strand, within AO353_00605 at 128.812 kb on + strand, within AO353_00605 at 128.813 kb on - strand, within AO353_00605 at 128.846 kb on - strand, within AO353_00605 at 128.846 kb on - strand, within AO353_00605 at 128.923 kb on + strand, within AO353_00605 at 129.039 kb on + strand, within AO353_00605 at 129.039 kb on + strand, within AO353_00605 at 129.039 kb on + strand, within AO353_00605 at 129.040 kb on - strand, within AO353_00605 at 129.179 kb on + strand, within AO353_00605 at 129.179 kb on + strand, within AO353_00605 at 129.179 kb on + strand, within AO353_00605 at 129.180 kb on - strand, within AO353_00605 at 129.229 kb on + strand, within AO353_00605 at 129.326 kb on - strand at 129.403 kb on + strand, within AO353_00605 at 129.404 kb on - strand, within AO353_00605 at 129.404 kb on - strand, within AO353_00605 at 129.499 kb on + strand at 129.499 kb on + strand at 129.500 kb on - strand at 129.608 kb on + strand at 129.609 kb on - strand at 129.891 kb on - strand, within AO353_00610 at 129.954 kb on + strand, within AO353_00610 at 130.077 kb on + strand, within AO353_00610 at 130.078 kb on - strand, within AO353_00610 at 130.193 kb on + strand at 130.194 kb on - strand at 130.363 kb on + strand at 130.363 kb on + strand at 130.363 kb on + strand at 130.363 kb on + strand at 130.364 kb on - strand at 130.364 kb on - strand at 130.364 kb on - strand at 130.383 kb on + strand at 130.383 kb on + strand at 130.400 kb on - strand at 130.400 kb on - strand at 130.525 kb on + strand at 131.143 kb on - strand, within AO353_00620 at 131.170 kb on - strand, within AO353_00620
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 128,614 + AO353_00605 0.33 -0.5 128,614 + AO353_00605 0.33 -1.9 128,615 - AO353_00605 0.33 -0.7 128,615 - AO353_00605 0.33 -1.3 128,632 + AO353_00605 0.34 -0.8 128,710 + AO353_00605 0.40 -1.4 128,711 - AO353_00605 0.40 -1.2 128,711 - AO353_00605 0.40 -1.3 128,810 - AO353_00605 0.46 -0.2 128,812 + AO353_00605 0.47 -0.1 128,812 + AO353_00605 0.47 -2.7 128,813 - AO353_00605 0.47 -0.9 128,846 - AO353_00605 0.49 -2.2 128,846 - AO353_00605 0.49 -2.0 128,923 + AO353_00605 0.54 -1.0 129,039 + AO353_00605 0.62 -2.2 129,039 + AO353_00605 0.62 -0.4 129,039 + AO353_00605 0.62 -0.6 129,040 - AO353_00605 0.62 -0.2 129,179 + AO353_00605 0.72 -2.3 129,179 + AO353_00605 0.72 -0.8 129,179 + AO353_00605 0.72 -1.3 129,180 - AO353_00605 0.72 -0.2 129,229 + AO353_00605 0.75 -0.3 129,326 - +0.8 129,403 + AO353_00605 0.88 -0.9 129,404 - AO353_00605 0.88 -1.5 129,404 - AO353_00605 0.88 -0.8 129,499 + -1.1 129,499 + -2.1 129,500 - +0.2 129,608 + -0.9 129,609 - -1.7 129,891 - AO353_00610 0.51 -3.4 129,954 + AO353_00610 0.61 +0.5 130,077 + AO353_00610 0.81 -0.0 130,078 - AO353_00610 0.81 -1.2 130,193 + -1.0 130,194 - -0.0 130,363 + +1.4 130,363 + -0.7 130,363 + -0.5 130,363 + +0.6 130,364 - -1.0 130,364 - -2.1 130,364 - +0.5 130,383 + -1.8 130,383 + -0.0 130,400 - -2.0 130,400 - -1.0 130,525 + +1.1 131,143 - AO353_00620 0.78 -1.5 131,170 - AO353_00620 0.81 -1.2
Or see this region's nucleotide sequence